Wall clock time and date at job start Mon Mar 30 2020 05:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35342 * 119.71129 * 2 1 4 4 C 1.40140 * 120.12847 * 179.97438 * 3 2 1 5 5 C 1.36579 * 119.70147 * 0.02562 * 4 3 2 6 6 C 1.40365 * 119.43724 * 0.02562 * 5 4 3 7 7 N 1.33396 * 131.74087 * 180.02562 * 6 5 4 8 8 C 1.32036 * 110.02189 * 179.97438 * 7 6 5 9 9 C 1.50702 * 125.94068 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47082 * 299.97165 * 9 8 7 11 11 C 1.52994 * 109.47371 * 59.97310 * 9 8 7 12 12 C 1.40087 * 108.11650 * 359.97438 * 8 7 6 13 13 C 1.39810 * 126.90004 * 180.02562 * 12 8 7 14 14 H 1.08004 * 120.00210 * 222.47047 * 13 12 8 15 15 C 1.39880 * 120.00182 * 42.46517 * 13 12 8 16 16 N 1.31024 * 119.99791 * 20.24309 * 15 13 12 17 17 Si 1.86806 * 119.99864 * 200.24812 * 15 13 12 18 18 H 1.48494 * 109.47226 * 89.99863 * 17 15 13 19 19 H 1.48504 * 109.46634 * 209.99975 * 17 15 13 20 20 H 1.48499 * 109.47054 * 329.99588 * 17 15 13 21 21 N 1.36240 * 119.71164 * 179.72800 * 2 1 3 22 22 H 1.09007 * 109.46909 * 95.75202 * 1 2 3 23 23 H 1.08997 * 109.47357 * 335.75541 * 1 2 3 24 24 H 1.08997 * 109.47042 * 215.75075 * 1 2 3 25 25 H 1.07999 * 119.93739 * 0.02562 * 3 2 1 26 26 H 1.07999 * 120.15338 * 180.02562 * 4 3 2 27 27 H 1.07993 * 120.28442 * 180.02562 * 5 4 3 28 28 H 1.09005 * 109.46619 * 179.97438 * 9 8 7 29 29 H 1.09003 * 109.47263 * 180.02562 * 10 9 8 30 30 H 1.09000 * 109.47254 * 299.99899 * 10 9 8 31 31 H 1.08994 * 109.47538 * 60.00393 * 10 9 8 32 32 H 1.09006 * 109.47278 * 60.00190 * 11 9 8 33 33 H 1.08999 * 109.47569 * 179.97438 * 11 9 8 34 34 H 1.09002 * 109.47359 * 300.00222 * 11 9 8 35 35 H 0.97008 * 119.99968 * 174.92408 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1778 1.1755 0.0000 4 6 3.5792 1.1857 0.0005 5 6 4.2645 0.0043 0.0005 6 6 3.5533 -1.2058 -0.0006 7 7 3.9614 -2.4758 -0.0004 8 6 2.9187 -3.2857 -0.0012 9 6 2.9685 -4.7919 -0.0007 10 6 3.7069 -5.2781 -1.2494 11 6 3.7056 -5.2775 1.2490 12 6 1.7579 -2.5014 -0.0014 13 6 0.4364 -2.9579 -0.0017 14 1 -0.2991 -2.4820 -0.6333 15 6 0.0669 -4.0309 0.8160 16 7 0.8068 -4.3531 1.8482 17 14 -1.4815 -5.0045 0.4363 18 1 -1.1472 -6.1326 -0.4697 19 1 -2.0538 -5.5366 1.6991 20 1 -2.4745 -4.1182 -0.2223 21 7 2.1823 -1.1833 0.0056 22 1 -0.3633 -0.1030 -1.0226 23 1 -0.3634 0.9370 0.4220 24 1 -0.3633 -0.8340 0.6004 25 1 1.6321 2.1075 0.0004 26 1 4.1149 2.1235 0.0010 27 1 5.3445 0.0012 0.0014 28 1 1.9534 -5.1890 -0.0012 29 1 3.7426 -6.3676 -1.2494 30 1 3.1818 -4.9323 -2.1398 31 1 4.7219 -4.8811 -1.2490 32 1 3.1795 -4.9312 2.1386 33 1 3.7412 -6.3669 1.2495 34 1 4.7207 -4.8804 1.2495 35 1 0.5131 -5.0486 2.4573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031916126.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:56 Heat of formation + Delta-G solvation = 58.599278 kcal Electronic energy + Delta-G solvation = -17970.628944 eV Core-core repulsion = 15354.801609 eV Total energy + Delta-G solvation = -2615.827335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09334 -36.71936 -34.14154 -33.58570 -32.49798 -29.66720 -28.50385 -26.91770 -26.09792 -24.31219 -22.35157 -21.33178 -20.23403 -18.48447 -17.34129 -15.94945 -15.36920 -14.94491 -14.48308 -14.43154 -13.63414 -13.14429 -12.91801 -12.70295 -12.64630 -12.15421 -11.98375 -11.66175 -11.48220 -11.29197 -11.22636 -10.84233 -10.66102 -10.36780 -10.33768 -10.18537 -9.89843 -9.84592 -9.55371 -8.93205 -8.53361 -7.31412 -6.80843 -6.49840 -4.29739 1.85658 2.51386 3.00927 3.07515 3.08129 3.83846 4.07096 4.14092 4.76836 4.95861 5.35741 5.48266 5.73589 5.86642 5.98853 6.07936 6.09192 6.15302 6.25306 6.33878 6.51570 6.59455 6.70283 6.79319 6.80800 6.91744 6.98620 7.07959 7.10400 7.11172 7.33791 7.48088 7.52887 7.63843 7.92537 8.28842 8.40962 8.76769 8.85277 9.50423 10.24120 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020385 B = 0.011167 C = 0.007888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.210567 B = 2506.803698 C = 3548.933335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.115 3.885 3 C -0.189 4.189 4 C -0.158 4.158 5 C -0.063 4.063 6 C 0.115 3.885 7 N -0.473 5.473 8 C -0.004 4.004 9 C 0.018 3.982 10 C -0.138 4.138 11 C -0.128 4.128 12 C 0.180 3.820 13 C -0.475 4.475 14 H 0.081 0.919 15 C 0.090 3.910 16 N -0.794 5.794 17 Si 0.907 3.093 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.264 1.264 21 N -0.389 5.389 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.097 0.903 25 H 0.125 0.875 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 2.824 -1.845 3.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.011 3.989 3 C -0.212 4.212 4 C -0.181 4.181 5 C -0.084 4.084 6 C -0.120 4.120 7 N -0.192 5.192 8 C -0.139 4.139 9 C -0.002 4.002 10 C -0.196 4.196 11 C -0.186 4.186 12 C 0.069 3.931 13 C -0.510 4.510 14 H 0.099 0.901 15 C -0.129 4.129 16 N -0.420 5.420 17 Si 0.731 3.269 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.189 1.189 21 N -0.068 5.068 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.143 0.857 26 H 0.134 0.866 27 H 0.142 0.858 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.161 2.367 -1.673 2.903 hybrid contribution -1.485 0.002 -0.052 1.486 sum -1.647 2.368 -1.724 3.361 Atomic orbital electron populations 1.21008 0.89590 1.03761 1.03050 1.20061 0.94449 0.84726 0.99649 1.20134 0.94481 0.95552 1.11012 1.20474 0.93718 0.96879 1.07048 1.19885 0.98793 0.88914 1.00780 1.20069 0.80749 0.93799 1.17410 1.69670 1.32074 0.97865 1.19608 1.20775 0.87120 0.94348 1.11677 1.19058 0.99633 0.88305 0.93200 1.21822 1.00585 0.98745 0.98444 1.21644 0.99588 0.97747 0.99607 1.18850 0.95407 0.78239 1.00567 1.18104 0.93281 1.14908 1.24708 0.90132 1.25572 0.97890 0.95935 0.93467 1.69886 1.36568 1.26410 1.09162 0.86341 0.81314 0.80425 0.78786 1.19127 1.20379 1.18862 1.43213 1.08006 1.05635 1.49957 0.91329 0.91517 0.88476 0.85743 0.86554 0.85825 0.89902 0.94109 0.93697 0.93080 0.91266 0.94985 0.94006 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 8.87 36.01 0.32 -1.79 16 2 C 0.12 2.45 6.79 -81.66 -0.55 1.89 16 3 C -0.19 -3.50 9.59 -39.90 -0.38 -3.88 16 4 C -0.16 -2.89 10.07 -39.47 -0.40 -3.29 16 5 C -0.06 -1.32 10.10 -39.38 -0.40 -1.72 16 6 C 0.11 2.87 7.77 -155.50 -1.21 1.66 16 7 N -0.47 -12.40 11.23 -8.10 -0.09 -12.49 16 8 C 0.00 -0.10 5.35 -81.81 -0.44 -0.54 16 9 C 0.02 0.41 2.41 -91.78 -0.22 0.19 16 10 C -0.14 -2.80 9.17 37.15 0.34 -2.46 16 11 C -0.13 -2.78 9.01 37.15 0.33 -2.44 16 12 C 0.18 4.73 6.24 -83.58 -0.52 4.21 16 13 C -0.47 -11.83 6.97 -38.38 -0.27 -12.10 16 14 H 0.08 1.93 6.92 -52.48 -0.36 1.57 16 15 C 0.09 2.12 3.82 -17.28 -0.07 2.06 16 16 N -0.79 -19.48 10.24 55.55 0.57 -18.91 16 17 Si 0.91 17.95 29.61 -169.99 -5.03 12.91 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 21 N -0.39 -9.70 2.98 -55.84 -0.17 -9.87 16 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.07 0.98 8.01 -51.93 -0.42 0.56 16 24 H 0.10 1.97 6.07 -51.93 -0.32 1.65 16 25 H 0.12 1.86 8.03 -52.49 -0.42 1.44 16 26 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 27 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 28 H 0.08 2.00 5.57 -51.93 -0.29 1.71 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.62 7.03 -51.93 -0.37 1.26 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 LS Contribution 286.45 15.07 4.32 4.32 Total: -1.00 -28.23 286.45 -8.55 -36.78 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.69 Total: 5.48 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -3.46 Total: -18.22 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.31 Total: -41.27 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.23 -8.55 -36.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031916126.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.384 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds