Wall clock time and date at job start Mon Mar 30 2020 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46934 * 2 1 4 4 C 1.53003 * 109.47221 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47285 * 179.97438 * 4 3 2 6 6 N 1.30100 * 124.98073 * 89.97363 * 5 4 3 7 7 C 1.35896 * 109.73380 * 180.02562 * 6 5 4 8 8 C 1.39687 * 133.49667 * 180.02562 * 7 6 5 9 9 C 1.37712 * 119.77182 * 179.97438 * 8 7 6 10 10 C 1.38718 * 120.52067 * 0.02562 * 9 8 7 11 11 C 1.37960 * 120.43953 * 0.02562 * 10 9 8 12 12 C 1.38707 * 119.82892 * 359.96394 * 11 10 9 13 13 N 1.36532 * 124.98531 * 270.00040 * 5 4 3 14 14 C 1.37314 * 126.39489 * 359.97438 * 13 5 4 15 15 H 1.08002 * 120.00202 * 326.51674 * 14 13 5 16 16 C 1.38914 * 120.00153 * 146.52013 * 14 13 5 17 17 N 1.31378 * 120.00056 * 339.39113 * 16 14 13 18 18 Si 1.86802 * 119.99864 * 159.38659 * 16 14 13 19 19 H 1.48499 * 109.46960 * 60.00431 * 18 16 14 20 20 H 1.48506 * 109.47001 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47292 * 299.99978 * 18 16 14 22 22 H 1.09004 * 109.47102 * 299.99533 * 1 2 3 23 23 H 1.08994 * 109.47029 * 60.00260 * 1 2 3 24 24 H 1.09006 * 109.46992 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47543 * 239.99975 * 2 1 3 26 26 H 1.09002 * 109.47298 * 119.99923 * 2 1 3 27 27 H 1.09004 * 109.47353 * 60.00446 * 3 2 1 28 28 H 1.08994 * 109.47050 * 299.99726 * 3 2 1 29 29 H 1.08996 * 109.47432 * 59.99867 * 4 3 2 30 30 H 1.09002 * 109.47121 * 299.99991 * 4 3 2 31 31 H 1.08000 * 120.11327 * 359.95997 * 8 7 6 32 32 H 1.08004 * 119.73252 * 179.72847 * 9 8 7 33 33 H 1.07999 * 119.78407 * 179.97438 * 10 9 8 34 34 H 1.07997 * 120.08641 * 179.97438 * 11 10 9 35 35 H 0.96996 * 120.00041 * 180.49742 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8634 -0.0013 6 7 4.3208 3.5671 1.0644 7 6 4.7573 4.8033 0.7064 8 6 5.1555 5.9294 1.4307 9 6 5.5569 7.0650 0.7632 10 6 5.5685 7.1001 -0.6235 11 6 5.1773 5.9970 -1.3539 12 6 4.7702 4.8444 -0.6983 13 7 4.3327 3.6011 -1.1202 14 6 4.1865 3.1872 -2.4213 15 1 4.3694 2.1556 -2.6836 16 6 3.8033 4.0953 -3.4002 17 7 3.1988 5.2112 -3.0606 18 14 4.1477 3.7298 -5.1994 19 1 3.4618 2.4717 -5.5890 20 1 3.6445 4.8483 -6.0369 21 1 5.6110 3.5794 -5.4027 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9330 0.9289 -0.8908 30 1 3.9337 0.9286 0.8891 31 1 5.1484 5.9095 2.5105 32 1 5.8604 7.9368 1.3238 33 1 5.8851 7.9971 -1.1348 34 1 5.1881 6.0306 -2.4333 35 1 2.9247 5.8419 -3.7446 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031934192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:29 Heat of formation + Delta-G solvation = 28.613858 kcal Electronic energy + Delta-G solvation = -17391.901260 eV Core-core repulsion = 14774.773660 eV Total energy + Delta-G solvation = -2617.127600 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.57181 -38.05960 -36.44748 -35.94758 -33.06837 -32.03378 -30.85275 -29.00697 -27.08343 -25.40918 -22.99429 -22.52897 -21.94909 -21.07331 -19.47938 -17.94858 -17.26517 -16.38987 -16.19952 -16.03370 -15.89286 -14.78544 -14.68673 -14.56429 -14.30260 -13.98834 -13.70561 -13.28263 -12.99278 -12.95798 -12.61446 -12.45240 -12.31744 -12.14311 -12.01345 -11.92422 -11.68748 -11.43224 -11.29856 -10.72142 -10.53426 -9.05290 -8.71335 -8.50489 -6.42755 0.36714 1.00440 1.34466 1.41231 1.47830 2.07393 2.21322 2.81026 2.87615 3.29962 3.56355 4.04919 4.09686 4.16420 4.30469 4.39213 4.48210 4.56230 4.70259 4.81478 4.86050 4.89650 4.96097 5.03624 5.07602 5.13032 5.17100 5.29719 5.32401 5.42208 5.46209 5.50866 5.78935 5.88079 6.09430 6.25063 6.40034 6.77030 7.38570 7.55260 8.38337 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.010491 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.086920 B = 2668.196436 C = 4180.640371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.099 4.099 4 C -0.018 4.018 5 C 0.201 3.799 6 N -0.552 5.552 7 C -0.006 4.006 8 C -0.101 4.101 9 C -0.131 4.131 10 C -0.148 4.148 11 C -0.072 4.072 12 C 0.010 3.990 13 N -0.305 5.305 14 C -0.385 4.385 15 H 0.116 0.884 16 C 0.017 3.983 17 N -0.855 5.855 18 Si 0.996 3.004 19 H -0.253 1.253 20 H -0.273 1.273 21 H -0.264 1.264 22 H 0.051 0.949 23 H 0.043 0.957 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.156 0.844 33 H 0.142 0.858 34 H 0.101 0.899 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 -3.966 0.641 4.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.138 4.138 4 C -0.057 4.057 5 C -0.061 4.061 6 N -0.276 5.276 7 C -0.129 4.129 8 C -0.121 4.121 9 C -0.152 4.152 10 C -0.169 4.169 11 C -0.093 4.093 12 C -0.105 4.105 13 N 0.024 4.976 14 C -0.512 4.512 15 H 0.133 0.867 16 C -0.193 4.193 17 N -0.485 5.485 18 Si 0.816 3.184 19 H -0.177 1.177 20 H -0.198 1.198 21 H -0.188 1.188 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.119 0.881 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.636 -4.153 1.213 4.373 hybrid contribution -0.026 0.491 -1.696 1.766 sum -0.662 -3.662 -0.483 3.752 Atomic orbital electron populations 1.21756 0.95255 1.02340 1.01388 1.21474 0.96389 0.94276 1.02949 1.21394 0.93291 0.98496 1.00579 1.19983 0.96214 0.85849 1.03605 1.24129 1.02299 0.98108 0.81564 1.70134 1.24836 1.03974 1.28640 1.19521 1.07334 0.94620 0.91475 1.20295 1.01658 0.90978 0.99195 1.20987 1.02362 0.97853 0.93981 1.21039 1.03717 0.97548 0.94563 1.20169 0.98913 0.91282 0.98933 1.19200 1.06311 0.90492 0.94503 1.41431 1.40864 1.08975 1.06314 1.19965 1.51216 0.98819 0.81240 0.86680 1.26471 0.92469 0.94823 1.05501 1.70155 1.30094 1.10777 1.37461 0.84967 0.79450 0.79093 0.74851 1.17713 1.19807 1.18841 0.93000 0.93736 0.90790 0.91232 0.90422 0.93349 0.94445 0.89950 0.88547 0.85277 0.82677 0.83993 0.88080 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.91 71.98 0.71 -2.80 16 2 C -0.11 -2.94 5.93 30.59 0.18 -2.76 16 3 C -0.10 -3.52 5.20 30.59 0.16 -3.36 16 4 C -0.02 -0.68 5.49 29.85 0.16 -0.52 16 5 C 0.20 10.10 7.08 137.76 0.98 11.08 16 6 N -0.55 -29.05 11.27 -179.55 -2.02 -31.07 16 7 C -0.01 -0.34 7.23 39.42 0.28 -0.06 16 8 C -0.10 -4.43 10.10 22.50 0.23 -4.20 16 9 C -0.13 -4.97 10.01 22.26 0.22 -4.75 16 10 C -0.15 -6.06 10.03 22.32 0.22 -5.84 16 11 C -0.07 -3.62 8.57 22.32 0.19 -3.43 16 12 C 0.01 0.54 6.16 38.78 0.24 0.78 16 13 N -0.30 -16.61 2.86 -333.13 -0.95 -17.56 16 14 C -0.39 -20.04 9.48 84.00 0.80 -19.24 16 15 H 0.12 5.55 7.36 -2.91 -0.02 5.53 16 16 C 0.02 0.84 4.52 84.92 0.38 1.22 16 17 N -0.86 -45.48 10.62 21.65 0.23 -45.25 16 18 Si 1.00 38.10 29.60 68.60 2.03 40.13 16 19 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 20 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 3.00 7.39 -2.39 -0.02 2.99 16 30 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 32 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 33 H 0.14 4.70 8.06 -2.91 -0.02 4.67 16 34 H 0.10 5.20 6.25 -2.91 -0.02 5.19 16 35 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -65.33 293.98 5.11 -60.22 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 1.07 Total: 27.41 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: 4.76 Total: -33.88 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -2.75 Total: -93.88 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -65.33 5.11 -60.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031934192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.830 kcal (2) G-P(sol) polarization free energy of solvation -65.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds