Wall clock time and date at job start Mon Mar 30 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47167 * 2 1 4 4 C 1.52990 * 109.47188 * 239.99531 * 2 1 3 5 5 C 1.50701 * 109.47432 * 185.00167 * 4 2 1 6 6 N 1.30092 * 124.98354 * 90.02409 * 5 4 2 7 7 C 1.35894 * 109.73725 * 180.02562 * 6 5 4 8 8 C 1.39681 * 133.50004 * 180.02562 * 7 6 5 9 9 C 1.37717 * 119.77347 * 179.97438 * 8 7 6 10 10 C 1.38723 * 120.51840 * 0.02562 * 9 8 7 11 11 C 1.37956 * 120.43606 * 0.02562 * 10 9 8 12 12 C 1.38700 * 119.83481 * 359.96303 * 11 10 9 13 13 N 1.36539 * 124.97767 * 269.72726 * 5 4 2 14 14 C 1.37311 * 126.40150 * 359.97438 * 13 5 4 15 15 H 1.08002 * 119.99903 * 32.91541 * 14 13 5 16 16 C 1.38912 * 119.99783 * 212.91478 * 14 13 5 17 17 N 1.31380 * 120.00127 * 20.90285 * 16 14 13 18 18 Si 1.86800 * 119.99751 * 200.89867 * 16 14 13 19 19 H 1.48498 * 109.47373 * 60.00264 * 18 16 14 20 20 H 1.48503 * 109.46947 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46927 * 300.00027 * 18 16 14 22 22 H 1.09001 * 109.46579 * 60.00181 * 1 2 3 23 23 H 1.09003 * 109.47095 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47003 * 300.00374 * 1 2 3 25 25 H 1.09001 * 109.46579 * 119.99819 * 2 1 3 26 26 H 1.09000 * 109.46924 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.46947 * 299.99828 * 3 2 1 28 28 H 1.08995 * 109.47237 * 59.99917 * 3 2 1 29 29 H 1.09002 * 109.47801 * 305.00480 * 4 2 1 30 30 H 1.09005 * 109.47385 * 65.00066 * 4 2 1 31 31 H 1.08000 * 120.11217 * 359.97438 * 8 7 6 32 32 H 1.08002 * 119.73540 * 180.02562 * 9 8 7 33 33 H 1.07999 * 119.77744 * 180.02562 * 10 9 8 34 34 H 1.08003 * 120.08102 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00230 * 174.94784 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5420 -0.8295 -1.1888 6 7 4.1977 -1.8183 -0.6552 7 6 5.5337 -1.5986 -0.7711 8 6 6.6642 -2.3203 -0.3809 9 6 7.9198 -1.8214 -0.6478 10 6 8.0711 -0.6069 -1.3008 11 6 6.9649 0.1189 -1.6919 12 6 5.6927 -0.3683 -1.4316 13 7 4.4140 0.0932 -1.6913 14 6 4.0840 1.2629 -2.3302 15 1 3.1915 1.8004 -2.0457 16 6 4.8981 1.7549 -3.3425 17 7 5.7240 0.9495 -3.9712 18 14 4.8186 3.5618 -3.8098 19 1 5.1694 4.3939 -2.6310 20 1 5.7790 3.8312 -4.9100 21 1 3.4438 3.8964 -4.2605 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6768 1.9563 0.8899 29 1 1.6054 -1.7199 -1.2951 30 1 1.7517 -0.1584 -2.1369 31 1 6.5540 -3.2663 0.1283 32 1 8.7935 -2.3801 -0.3462 33 1 9.0614 -0.2270 -1.5044 34 1 7.0893 1.0636 -2.2004 35 1 6.2388 1.2754 -4.7260 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031934250.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:37 Heat of formation + Delta-G solvation = 49.322922 kcal Electronic energy + Delta-G solvation = -17797.803163 eV Core-core repulsion = 15181.573576 eV Total energy + Delta-G solvation = -2616.229588 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77138 -36.61504 -35.21131 -34.13484 -31.18154 -29.20251 -28.97218 -26.77968 -26.15986 -25.10365 -21.36835 -20.92726 -20.05093 -19.02948 -17.58123 -16.18928 -15.43480 -14.77221 -14.63159 -14.32858 -14.08161 -13.18385 -12.99577 -12.95768 -12.82180 -12.06725 -11.94209 -11.75758 -11.55445 -11.34007 -11.08159 -10.81555 -10.79023 -10.75978 -10.43662 -10.35609 -10.18153 -9.98518 -9.46765 -8.86597 -8.60664 -7.17091 -6.86605 -6.68037 -4.47365 2.18182 2.76743 2.98234 3.01000 3.03441 3.76369 4.03764 4.58899 4.72876 5.14628 5.20656 5.35590 5.39501 5.64175 5.94033 5.95812 6.00263 6.05342 6.09924 6.21109 6.23556 6.33370 6.44136 6.51178 6.68304 6.77643 6.82076 6.83008 6.87912 7.00518 7.13669 7.26900 7.56878 7.68207 7.91251 8.11558 8.21898 8.65553 9.27507 9.45112 10.21257 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.012773 C = 0.007486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.298586 B = 2191.679813 C = 3739.277527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.020 4.020 5 C 0.216 3.784 6 N -0.533 5.533 7 C 0.027 3.973 8 C -0.091 4.091 9 C -0.145 4.145 10 C -0.160 4.160 11 C -0.042 4.042 12 C 0.043 3.957 13 N -0.282 5.282 14 C -0.363 4.363 15 H 0.117 0.883 16 C 0.054 3.946 17 N -0.820 5.820 18 Si 0.924 3.076 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.266 1.266 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 1.755 3.279 5.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.207 4.207 4 C -0.059 4.059 5 C -0.045 4.045 6 N -0.256 5.256 7 C -0.097 4.097 8 C -0.111 4.111 9 C -0.166 4.166 10 C -0.181 4.181 11 C -0.063 4.063 12 C -0.072 4.072 13 N 0.048 4.952 14 C -0.491 4.491 15 H 0.134 0.866 16 C -0.159 4.159 17 N -0.449 5.449 18 Si 0.748 3.252 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.191 1.191 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.617 1.215 3.403 5.113 hybrid contribution 0.499 1.497 -0.962 1.848 sum -3.118 2.712 2.441 4.799 Atomic orbital electron populations 1.21825 0.95475 1.01371 1.01384 1.21077 0.94834 0.96618 0.98297 1.22024 1.02577 0.95446 1.00616 1.19902 0.86390 1.01179 0.98461 1.23091 0.93752 0.86315 1.01359 1.70145 1.02804 1.25330 1.27297 1.18890 0.91448 0.95316 1.04007 1.19858 0.90096 0.98896 1.02238 1.20471 0.95677 0.97117 1.03362 1.20548 0.96977 0.96462 1.04145 1.20034 0.89235 0.99884 0.97098 1.18670 0.87104 0.97586 1.03864 1.41158 1.02884 1.14954 1.36225 1.19857 1.12811 0.98309 1.18132 0.86563 1.25588 0.95151 1.00329 0.94837 1.70025 1.22660 1.35533 1.16666 0.86037 0.79047 0.81385 0.78726 1.18944 1.20235 1.19082 0.92753 0.92839 0.93034 0.91121 0.91404 0.92538 0.93766 0.90268 0.90279 0.87547 0.87568 0.87630 0.86752 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 2 C -0.09 -1.46 2.91 -90.62 -0.26 -1.72 16 3 C -0.15 -2.53 7.65 37.16 0.28 -2.25 16 4 C -0.02 -0.39 4.98 -27.89 -0.14 -0.52 16 5 C 0.22 5.21 6.33 -154.37 -0.98 4.23 16 6 N -0.53 -13.58 11.27 -8.10 -0.09 -13.67 16 7 C 0.03 0.70 7.23 -84.66 -0.61 0.09 16 8 C -0.09 -2.04 10.10 -39.23 -0.40 -2.43 16 9 C -0.15 -2.96 10.02 -39.59 -0.40 -3.36 16 10 C -0.16 -3.43 10.03 -39.51 -0.40 -3.82 16 11 C -0.04 -1.04 8.55 -39.51 -0.34 -1.38 16 12 C 0.04 1.15 6.16 -83.86 -0.52 0.63 16 13 N -0.28 -7.27 2.52 -56.64 -0.14 -7.41 16 14 C -0.36 -8.98 8.20 -14.85 -0.12 -9.10 16 15 H 0.12 2.65 5.21 -52.49 -0.27 2.38 16 16 C 0.05 1.31 4.51 -17.50 -0.08 1.23 16 17 N -0.82 -21.14 10.61 55.49 0.59 -20.56 16 18 Si 0.92 18.39 29.60 -169.99 -5.03 13.35 16 19 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.07 1.37 5.98 -51.93 -0.31 1.06 16 27 H 0.06 0.93 7.07 -51.93 -0.37 0.56 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.50 7.78 -51.93 -0.40 1.09 16 31 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.11 2.86 6.24 -52.48 -0.33 2.53 16 35 H 0.28 6.76 8.32 -40.82 -0.34 6.42 16 LS Contribution 284.80 15.07 4.29 4.29 Total: -1.00 -28.68 284.80 -8.62 -37.30 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -4.62 Total: 6.60 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -3.61 Total: -19.90 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.35 Total: -41.64 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.68 -8.62 -37.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031934250.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.619 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds