Wall clock time and date at job start Mon Mar 30 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46837 * 2 1 4 4 C 1.52996 * 109.47319 * 240.00236 * 2 1 3 5 5 C 1.50700 * 109.47470 * 119.99580 * 2 1 3 6 6 N 1.30095 * 124.97860 * 0.03019 * 5 2 1 7 7 C 1.35893 * 109.73464 * 179.97438 * 6 5 2 8 8 C 1.39683 * 133.49956 * 180.02562 * 7 6 5 9 9 C 1.37714 * 119.77737 * 179.97438 * 8 7 6 10 10 C 1.38729 * 120.51715 * 0.02562 * 9 8 7 11 11 C 1.37955 * 120.43574 * 0.02562 * 10 9 8 12 12 C 1.38714 * 119.83633 * 359.96604 * 11 10 9 13 13 N 1.36532 * 124.98203 * 179.97438 * 5 2 1 14 14 C 1.37315 * 126.39966 * 0.02989 * 13 5 2 15 15 H 1.07995 * 119.99542 * 324.53053 * 14 13 5 16 16 C 1.38913 * 119.99733 * 144.53206 * 14 13 5 17 17 N 1.31378 * 120.00458 * 343.21101 * 16 14 13 18 18 Si 1.86803 * 119.99564 * 163.20821 * 16 14 13 19 19 H 1.48497 * 109.47234 * 89.99984 * 18 16 14 20 20 H 1.48502 * 109.46854 * 209.99984 * 18 16 14 21 21 H 1.48505 * 109.47201 * 329.99811 * 18 16 14 22 22 H 1.08998 * 109.47369 * 299.99841 * 1 2 3 23 23 H 1.09002 * 109.47518 * 60.00239 * 1 2 3 24 24 H 1.09002 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46912 * 180.02562 * 3 2 1 26 26 H 1.08995 * 109.46940 * 299.99456 * 3 2 1 27 27 H 1.08998 * 109.47011 * 59.99939 * 3 2 1 28 28 H 1.08998 * 109.46901 * 299.99617 * 4 2 1 29 29 H 1.09002 * 109.47214 * 59.99339 * 4 2 1 30 30 H 1.09002 * 109.47497 * 179.97438 * 4 2 1 31 31 H 1.08002 * 120.11059 * 359.95719 * 8 7 6 32 32 H 1.07997 * 119.74025 * 179.72546 * 9 8 7 33 33 H 1.07997 * 119.78195 * 179.97438 * 10 9 8 34 34 H 1.08000 * 120.08167 * 179.97438 * 11 10 9 35 35 H 0.96996 * 120.00041 * 184.89860 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2305 6 7 1.2760 -1.2400 2.1469 7 6 2.0500 -1.7987 3.1141 8 6 1.7648 -2.4833 4.2978 9 6 2.7953 -2.9406 5.0887 10 6 4.1152 -2.7263 4.7194 11 6 4.4141 -2.0512 3.5541 12 6 3.3889 -1.5836 2.7451 13 7 3.3480 -0.8932 1.5464 14 6 4.4287 -0.4697 0.8127 15 1 4.3835 -0.4731 -0.2663 16 6 5.5799 -0.0370 1.4584 17 7 5.5382 0.2825 2.7321 18 14 7.1876 0.0906 0.5157 19 1 7.3081 1.4472 -0.0760 20 1 8.3242 -0.1487 1.4410 21 1 7.2084 -0.9254 -0.5672 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6767 -1.7488 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1300 -0.7208 -1.2495 31 1 0.7396 -2.6531 4.5920 32 1 2.5741 -3.4659 6.0060 33 1 4.9141 -3.0897 5.3488 34 1 5.4437 -1.8872 3.2724 35 1 6.3234 0.6518 3.1655 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031936365.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:42 Heat of formation + Delta-G solvation = 54.780495 kcal Electronic energy + Delta-G solvation = -18051.155344 eV Core-core repulsion = 15435.162415 eV Total energy + Delta-G solvation = -2615.992929 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83513 -36.83062 -34.99922 -34.11468 -31.19637 -29.12902 -27.72597 -26.70408 -26.53215 -25.22240 -22.42147 -21.03605 -20.12352 -18.39382 -17.64899 -15.95363 -15.36329 -14.73746 -14.61969 -14.16561 -13.38484 -13.23701 -13.19740 -12.95863 -12.71549 -11.98212 -11.80879 -11.63683 -11.40705 -11.35079 -10.99154 -10.89438 -10.77172 -10.65731 -10.47593 -10.29095 -10.22588 -9.94945 -9.41298 -8.86923 -8.57998 -7.15720 -6.86196 -6.64961 -4.49591 2.19621 2.77102 2.98140 3.00462 3.04315 3.76419 4.06939 4.57375 4.71740 5.11260 5.16201 5.56740 5.61909 5.73994 5.97143 6.01556 6.10653 6.15148 6.21844 6.32561 6.40741 6.43268 6.47179 6.66941 6.71425 6.76671 6.85360 6.91031 7.02369 7.08338 7.16590 7.28173 7.58025 7.69437 7.92238 8.11915 8.22876 8.65551 9.27881 9.45598 10.23679 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.014420 C = 0.007991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.225212 B = 1941.274825 C = 3503.118940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.028 3.972 3 C -0.141 4.141 4 C -0.146 4.146 5 C 0.228 3.772 6 N -0.529 5.529 7 C 0.026 3.974 8 C -0.091 4.091 9 C -0.146 4.146 10 C -0.161 4.161 11 C -0.041 4.041 12 C 0.047 3.953 13 N -0.285 5.285 14 C -0.357 4.357 15 H 0.113 0.887 16 C 0.053 3.947 17 N -0.824 5.824 18 Si 0.924 3.076 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.263 1.263 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 -0.573 -3.461 3.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.026 3.974 3 C -0.199 4.199 4 C -0.204 4.204 5 C -0.034 4.034 6 N -0.251 5.251 7 C -0.098 4.098 8 C -0.111 4.111 9 C -0.167 4.167 10 C -0.182 4.182 11 C -0.061 4.061 12 C -0.068 4.068 13 N 0.045 4.955 14 C -0.485 4.485 15 H 0.131 0.869 16 C -0.160 4.160 17 N -0.454 5.454 18 Si 0.748 3.252 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.187 1.187 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.168 -0.463 -3.398 4.057 hybrid contribution 1.819 0.269 -0.131 1.843 sum -0.349 -0.194 -3.529 3.552 Atomic orbital electron populations 1.21619 0.93381 1.02093 1.00801 1.18744 0.95368 0.94164 0.89075 1.21862 1.03404 0.94015 1.00588 1.22011 1.02614 0.99844 0.95893 1.23029 0.80741 1.01903 0.97754 1.70148 1.32325 1.19251 1.03397 1.18918 0.89835 1.04247 0.96783 1.19849 0.97962 1.00052 0.93225 1.20471 0.92712 1.03848 0.99633 1.20555 0.95757 1.04225 0.97625 1.20037 0.97796 0.95357 0.92913 1.18699 0.95508 1.00719 0.91877 1.41061 1.05040 1.34303 1.15102 1.19762 0.90642 1.46324 0.91786 0.86926 1.25589 1.00280 0.94291 0.95791 1.70002 1.31146 1.33667 1.10554 0.85968 0.80208 0.79390 0.79620 1.19536 1.20031 1.18658 0.92300 0.93315 0.92370 0.90446 0.93083 0.93095 0.92975 0.92616 0.91125 0.87570 0.87590 0.87643 0.86654 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 7.90 37.15 0.29 -1.77 16 2 C 0.03 0.55 0.77 -155.66 -0.12 0.43 16 3 C -0.14 -2.59 8.34 37.16 0.31 -2.28 16 4 C -0.15 -2.51 8.34 37.16 0.31 -2.20 16 5 C 0.23 5.49 6.24 -154.37 -0.96 4.53 16 6 N -0.53 -13.38 10.48 -8.11 -0.08 -13.47 16 7 C 0.03 0.66 7.23 -84.66 -0.61 0.05 16 8 C -0.09 -2.04 10.10 -39.23 -0.40 -2.43 16 9 C -0.15 -2.97 10.02 -39.59 -0.40 -3.37 16 10 C -0.16 -3.44 10.03 -39.50 -0.40 -3.83 16 11 C -0.04 -1.00 8.55 -39.51 -0.34 -1.34 16 12 C 0.05 1.25 6.13 -83.86 -0.51 0.74 16 13 N -0.29 -7.36 2.85 -56.64 -0.16 -7.52 16 14 C -0.36 -8.81 7.52 -14.85 -0.11 -8.92 16 15 H 0.11 2.58 5.20 -52.49 -0.27 2.31 16 16 C 0.05 1.28 4.65 -17.50 -0.08 1.20 16 17 N -0.82 -21.16 10.48 55.49 0.58 -20.57 16 18 Si 0.92 18.31 29.59 -169.99 -5.03 13.28 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.08 1.57 6.33 -51.93 -0.33 1.24 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.29 5.13 -51.93 -0.27 1.03 16 31 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.12 2.89 6.31 -52.49 -0.33 2.56 16 35 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 283.00 15.07 4.26 4.26 Total: -1.00 -28.56 283.00 -8.01 -36.56 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.56 Total: 6.67 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -3.02 Total: -19.20 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.34 Total: -41.57 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.56 -8.01 -36.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031936365.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.344 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds