Wall clock time and date at job start Mon Mar 30 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46837 * 2 1 4 4 C 1.52996 * 109.47319 * 240.00236 * 2 1 3 5 5 C 1.50700 * 109.47470 * 119.99580 * 2 1 3 6 6 N 1.30095 * 124.97860 * 0.03019 * 5 2 1 7 7 C 1.35893 * 109.73464 * 179.97438 * 6 5 2 8 8 C 1.39683 * 133.49956 * 180.02562 * 7 6 5 9 9 C 1.37714 * 119.77737 * 179.97438 * 8 7 6 10 10 C 1.38729 * 120.51715 * 0.02562 * 9 8 7 11 11 C 1.37955 * 120.43574 * 0.02562 * 10 9 8 12 12 C 1.38714 * 119.83633 * 359.96604 * 11 10 9 13 13 N 1.36532 * 124.98203 * 179.97438 * 5 2 1 14 14 C 1.37315 * 126.39966 * 0.02989 * 13 5 2 15 15 H 1.07995 * 119.99542 * 324.53053 * 14 13 5 16 16 C 1.38913 * 119.99733 * 144.53206 * 14 13 5 17 17 N 1.31378 * 120.00458 * 343.21101 * 16 14 13 18 18 Si 1.86803 * 119.99564 * 163.20821 * 16 14 13 19 19 H 1.48497 * 109.47234 * 89.99984 * 18 16 14 20 20 H 1.48502 * 109.46854 * 209.99984 * 18 16 14 21 21 H 1.48505 * 109.47201 * 329.99811 * 18 16 14 22 22 H 1.08998 * 109.47369 * 299.99841 * 1 2 3 23 23 H 1.09002 * 109.47518 * 60.00239 * 1 2 3 24 24 H 1.09002 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46912 * 180.02562 * 3 2 1 26 26 H 1.08995 * 109.46940 * 299.99456 * 3 2 1 27 27 H 1.08998 * 109.47011 * 59.99939 * 3 2 1 28 28 H 1.08998 * 109.46901 * 299.99617 * 4 2 1 29 29 H 1.09002 * 109.47214 * 59.99339 * 4 2 1 30 30 H 1.09002 * 109.47497 * 179.97438 * 4 2 1 31 31 H 1.08002 * 120.11059 * 359.95719 * 8 7 6 32 32 H 1.07997 * 119.74025 * 179.72546 * 9 8 7 33 33 H 1.07997 * 119.78195 * 179.97438 * 10 9 8 34 34 H 1.08000 * 120.08167 * 179.97438 * 11 10 9 35 35 H 0.96996 * 120.00041 * 184.89860 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2305 6 7 1.2760 -1.2400 2.1469 7 6 2.0500 -1.7987 3.1141 8 6 1.7648 -2.4833 4.2978 9 6 2.7953 -2.9406 5.0887 10 6 4.1152 -2.7263 4.7194 11 6 4.4141 -2.0512 3.5541 12 6 3.3889 -1.5836 2.7451 13 7 3.3480 -0.8932 1.5464 14 6 4.4287 -0.4697 0.8127 15 1 4.3835 -0.4731 -0.2663 16 6 5.5799 -0.0370 1.4584 17 7 5.5382 0.2825 2.7321 18 14 7.1876 0.0906 0.5157 19 1 7.3081 1.4472 -0.0760 20 1 8.3242 -0.1487 1.4410 21 1 7.2084 -0.9254 -0.5672 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6767 -1.7488 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1300 -0.7208 -1.2495 31 1 0.7396 -2.6531 4.5920 32 1 2.5741 -3.4659 6.0060 33 1 4.9141 -3.0897 5.3488 34 1 5.4437 -1.8872 3.2724 35 1 6.3234 0.6518 3.1655 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031936365.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:40 Heat of formation + Delta-G solvation = 40.059475 kcal Electronic energy + Delta-G solvation = -18051.793696 eV Core-core repulsion = 15435.162415 eV Total energy + Delta-G solvation = -2616.631281 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.62997 -38.47015 -36.60632 -35.92843 -33.04556 -30.89514 -29.48548 -28.11155 -27.95312 -27.07404 -24.10596 -22.82796 -21.90451 -20.08714 -19.40250 -17.68968 -17.18002 -16.36615 -16.27747 -15.88450 -14.95172 -14.85321 -14.75033 -14.70083 -14.45243 -13.68500 -13.37440 -13.00350 -12.97084 -12.88735 -12.56938 -12.45948 -12.36504 -12.24056 -12.01700 -11.96160 -11.75593 -11.54453 -11.18748 -10.70003 -10.44936 -8.97895 -8.67524 -8.45895 -6.38006 0.41013 1.02994 1.35763 1.40123 1.50184 2.08969 2.27501 2.84130 2.91709 3.32972 3.50978 4.05949 4.15480 4.15635 4.34516 4.40800 4.61900 4.74598 4.81080 4.86346 4.89155 4.96977 4.99035 5.02580 5.05423 5.19329 5.25560 5.30367 5.39390 5.49252 5.51244 5.61146 5.83160 5.91585 6.13707 6.31241 6.43782 6.82061 7.44643 7.61529 8.44075 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.014420 C = 0.007991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.225212 B = 1941.274825 C = 3503.118940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.021 3.979 3 C -0.132 4.132 4 C -0.138 4.138 5 C 0.216 3.784 6 N -0.549 5.549 7 C -0.008 4.008 8 C -0.103 4.103 9 C -0.133 4.133 10 C -0.152 4.152 11 C -0.069 4.069 12 C 0.012 3.988 13 N -0.302 5.302 14 C -0.374 4.374 15 H 0.124 0.876 16 C 0.012 3.988 17 N -0.861 5.861 18 Si 0.993 3.007 19 H -0.260 1.260 20 H -0.276 1.276 21 H -0.256 1.256 22 H 0.042 0.958 23 H 0.088 0.912 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.031 0.969 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 -0.758 -4.133 4.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.019 3.981 3 C -0.190 4.190 4 C -0.196 4.196 5 C -0.047 4.047 6 N -0.272 5.272 7 C -0.131 4.131 8 C -0.123 4.123 9 C -0.154 4.154 10 C -0.173 4.173 11 C -0.089 4.089 12 C -0.103 4.103 13 N 0.027 4.973 14 C -0.502 4.502 15 H 0.141 0.859 16 C -0.196 4.196 17 N -0.492 5.492 18 Si 0.814 3.186 19 H -0.185 1.185 20 H -0.201 1.201 21 H -0.180 1.180 22 H 0.061 0.939 23 H 0.106 0.894 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.119 0.881 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.226 -0.655 -4.069 4.684 hybrid contribution 1.772 0.285 0.162 1.802 sum -0.454 -0.370 -3.907 3.951 Atomic orbital electron populations 1.21561 0.91598 1.01894 1.01937 1.19069 0.96786 0.94212 0.88013 1.21791 1.01818 0.93762 1.01645 1.21948 1.01534 0.99769 0.96318 1.24044 0.80426 1.01352 0.98844 1.70139 1.32814 1.20200 1.04048 1.19525 0.89911 1.05494 0.98198 1.20265 0.99796 0.99721 0.92508 1.20954 0.91560 1.02396 1.00459 1.21010 0.97499 1.02273 0.96478 1.20151 0.96878 0.97352 0.94556 1.19204 0.96459 1.01838 0.92815 1.41329 1.05818 1.34811 1.15336 1.20183 0.91014 1.46524 0.92433 0.85881 1.26500 1.03170 0.93430 0.96507 1.70122 1.31984 1.34821 1.12258 0.84941 0.75647 0.79779 0.78253 1.18489 1.20116 1.17961 0.93880 0.89359 0.93233 0.92762 0.88936 0.94981 0.93625 0.88683 0.92692 0.85497 0.82943 0.84278 0.88101 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.68 7.90 71.98 0.57 -3.11 16 2 C 0.02 0.81 0.77 -52.93 -0.04 0.77 16 3 C -0.13 -4.77 8.34 71.98 0.60 -4.17 16 4 C -0.14 -4.55 8.34 71.98 0.60 -3.95 16 5 C 0.22 10.64 6.24 137.76 0.86 11.50 16 6 N -0.55 -28.52 10.48 -179.56 -1.88 -30.40 16 7 C -0.01 -0.44 7.23 39.43 0.28 -0.15 16 8 C -0.10 -4.54 10.10 22.49 0.23 -4.31 16 9 C -0.13 -5.13 10.02 22.26 0.22 -4.91 16 10 C -0.15 -6.31 10.03 22.32 0.22 -6.09 16 11 C -0.07 -3.46 8.55 22.32 0.19 -3.26 16 12 C 0.01 0.64 6.13 38.78 0.24 0.88 16 13 N -0.30 -16.11 2.85 -333.12 -0.95 -17.06 16 14 C -0.37 -18.89 7.52 84.00 0.63 -18.26 16 15 H 0.12 5.74 5.20 -2.91 -0.02 5.72 16 16 C 0.01 0.61 4.65 84.92 0.39 1.01 16 17 N -0.86 -45.56 10.48 21.65 0.23 -45.33 16 18 Si 0.99 37.76 29.59 68.60 2.03 39.79 16 19 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 20 H -0.28 -10.42 7.11 99.48 0.71 -9.72 16 21 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 2.20 6.33 -2.39 -0.02 2.18 16 26 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.05 1.97 5.13 -2.39 -0.01 1.96 16 31 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 32 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 34 H 0.10 5.24 6.31 -2.91 -0.02 5.22 16 35 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -64.61 283.00 5.51 -59.10 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 1.08 Total: 27.96 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 5.00 Total: -34.06 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -2.61 Total: -92.80 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -64.61 5.51 -59.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031936365.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.162 kcal (2) G-P(sol) polarization free energy of solvation -64.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds