Wall clock time and date at job start Mon Mar 30 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50704 * 109.47277 * 2 1 4 4 N 1.30098 * 124.97930 * 89.31746 * 3 2 1 5 5 C 1.35895 * 109.73456 * 179.97438 * 4 3 2 6 6 C 1.39679 * 133.50272 * 179.97438 * 5 4 3 7 7 C 1.37709 * 119.77675 * 179.71199 * 6 5 4 8 8 C 1.50702 * 119.74278 * 180.28923 * 7 6 5 9 9 C 1.38728 * 120.51895 * 0.59148 * 7 6 5 10 10 C 1.50698 * 119.78367 * 179.69740 * 9 7 6 11 11 C 1.37964 * 120.43461 * 359.42800 * 9 7 6 12 12 C 1.38714 * 119.82976 * 0.26978 * 11 9 7 13 13 N 1.36534 * 124.98071 * 269.28861 * 3 2 1 14 14 C 1.37311 * 126.39978 * 0.02725 * 13 3 2 15 15 H 1.08006 * 119.99376 * 320.44299 * 14 13 3 16 16 C 1.38912 * 120.00149 * 140.44763 * 14 13 3 17 17 N 1.31387 * 119.99842 * 156.36462 * 16 14 13 18 18 Si 1.86800 * 119.99875 * 336.36024 * 16 14 13 19 19 H 1.48503 * 109.46895 * 95.28807 * 18 16 14 20 20 H 1.48499 * 109.46953 * 215.28799 * 18 16 14 21 21 H 1.48498 * 109.47075 * 335.28402 * 18 16 14 22 22 H 1.09003 * 109.47368 * 302.10064 * 1 2 3 23 23 H 1.09006 * 109.47356 * 62.09499 * 1 2 3 24 24 H 1.09003 * 109.47511 * 182.09537 * 1 2 3 25 25 H 1.09003 * 109.47567 * 239.99972 * 2 1 3 26 26 H 1.08997 * 109.47328 * 119.99914 * 2 1 3 27 27 H 1.07999 * 120.11006 * 0.02876 * 6 5 4 28 28 H 1.09002 * 109.47606 * 270.29978 * 8 7 6 29 29 H 1.08997 * 109.46846 * 30.30103 * 8 7 6 30 30 H 1.09005 * 109.46758 * 150.29772 * 8 7 6 31 31 H 1.08997 * 109.47247 * 269.72866 * 10 9 7 32 32 H 1.08997 * 109.47255 * 149.73031 * 10 9 7 33 33 H 1.08998 * 109.46950 * 29.72958 * 10 9 7 34 34 H 1.07999 * 120.08468 * 180.29135 * 11 9 7 35 35 H 0.96999 * 119.99563 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2689 2.1282 1.0659 5 6 2.7106 3.3628 0.7086 6 6 3.1003 4.4915 1.4332 7 6 3.5158 5.6224 0.7664 8 6 3.9423 6.8376 1.5490 9 6 3.5389 5.6541 -0.6204 10 6 3.9901 6.9028 -1.3332 11 6 3.1567 4.5480 -1.3511 12 6 2.7412 3.3981 -0.6960 13 7 2.3063 2.1542 -1.1186 14 6 2.1749 1.7356 -2.4197 15 1 2.4540 0.7289 -2.6939 16 6 1.6831 2.6070 -3.3834 17 7 1.9729 2.4163 -4.6506 18 14 0.6096 4.0496 -2.8774 19 1 1.4512 5.2638 -2.7268 20 1 -0.4218 4.2882 -3.9187 21 1 -0.0538 3.7435 -1.5846 22 1 -0.3634 0.5461 0.8706 23 1 -0.3634 0.4810 -0.9082 24 1 -0.3634 -1.0270 0.0376 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.0807 4.4756 2.5129 28 1 3.0772 7.4757 1.7295 29 1 4.3682 6.5247 2.5023 30 1 4.6902 7.3913 0.9812 31 1 3.1302 7.5468 -1.5176 32 1 4.4517 6.6324 -2.2829 33 1 4.7147 7.4325 -0.7148 34 1 3.1814 4.5773 -2.4304 35 1 1.6298 3.0250 -5.3234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031943367.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:12 Heat of formation + Delta-G solvation = 52.936418 kcal Electronic energy + Delta-G solvation = -17773.189098 eV Core-core repulsion = 15157.116203 eV Total energy + Delta-G solvation = -2616.072895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -41.12235 -37.49514 -34.14645 -33.10248 -31.98817 -30.94473 -30.29842 -26.63085 -25.47194 -24.98160 -22.98470 -20.97489 -20.34244 -19.07476 -17.79190 -16.03112 -15.78161 -14.82253 -14.43693 -14.02275 -13.68733 -13.66912 -13.47803 -13.10464 -12.87641 -12.51468 -12.43656 -11.99305 -11.78851 -11.60593 -11.26029 -11.17591 -10.95923 -10.88575 -10.50548 -10.35128 -10.30712 -9.96249 -9.71795 -8.96128 -8.77602 -7.28747 -7.05574 -6.92807 -4.57474 1.82912 2.38893 2.97320 3.09938 3.21543 3.73480 3.90445 4.16772 4.60219 4.72907 5.02782 5.42707 5.50113 5.61255 5.68804 5.72837 5.88405 5.89223 5.91622 6.03902 6.08887 6.21120 6.27627 6.29499 6.35375 6.44002 6.51097 6.64190 6.70715 6.72848 6.90559 7.20749 7.36891 7.51882 7.59841 7.85518 7.96827 8.57593 9.03093 9.14125 10.13267 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.011862 C = 0.008248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.425520 B = 2359.900193 C = 3393.996757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.028 4.028 3 C 0.228 3.772 4 N -0.525 5.525 5 C 0.037 3.963 6 C -0.077 4.077 7 C -0.111 4.111 8 C -0.102 4.102 9 C -0.109 4.109 10 C -0.104 4.104 11 C -0.085 4.085 12 C 0.010 3.990 13 N -0.304 5.304 14 C -0.358 4.358 15 H 0.120 0.880 16 C 0.087 3.913 17 N -0.826 5.826 18 Si 0.864 3.136 19 H -0.244 1.244 20 H -0.281 1.281 21 H -0.260 1.260 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.427 4.339 5.484 7.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.034 4.034 4 N -0.247 5.247 5 C -0.087 4.087 6 C -0.097 4.097 7 C -0.114 4.114 8 C -0.159 4.159 9 C -0.111 4.111 10 C -0.160 4.160 11 C -0.105 4.105 12 C -0.104 4.104 13 N 0.024 4.976 14 C -0.486 4.486 15 H 0.138 0.862 16 C -0.127 4.127 17 N -0.455 5.455 18 Si 0.688 3.312 19 H -0.169 1.169 20 H -0.207 1.207 21 H -0.183 1.183 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.284 3.994 5.873 7.108 hybrid contribution -0.523 0.816 -0.992 1.387 sum -0.239 4.810 4.881 6.857 Atomic orbital electron populations 1.21658 0.94665 1.01140 1.02485 1.19798 0.95981 0.88027 1.02934 1.23401 1.01566 0.96724 0.81665 1.70203 1.23482 1.03106 1.27916 1.18854 1.05782 0.93588 0.90476 1.19781 1.01155 0.90577 0.98166 1.19170 1.03947 0.95481 0.92826 1.20684 1.00637 0.95536 0.99006 1.19142 1.04024 0.95184 0.92781 1.20693 1.00512 0.95134 0.99678 1.19888 1.00792 0.90665 0.99164 1.18912 1.06720 0.89991 0.94788 1.41449 1.41311 1.08354 1.06461 1.19197 1.47147 1.02392 0.79832 0.86224 1.25333 0.94999 0.97803 0.94553 1.69771 1.37299 1.37296 1.01136 0.87086 0.81302 0.83178 0.79626 1.16860 1.20745 1.18340 0.92674 0.92221 0.92472 0.90106 0.90133 0.86777 0.92218 0.92357 0.91795 0.92235 0.92291 0.91649 0.86444 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.89 37.15 0.37 -2.02 16 2 C -0.03 -0.53 6.21 -27.89 -0.17 -0.70 16 3 C 0.23 5.39 7.08 -154.37 -1.09 4.29 16 4 N -0.52 -12.80 11.27 -8.10 -0.09 -12.89 16 5 C 0.04 0.90 7.23 -84.66 -0.61 0.29 16 6 C -0.08 -1.60 9.73 -39.24 -0.38 -1.98 16 7 C -0.11 -2.09 5.88 -104.63 -0.61 -2.70 16 8 C -0.10 -1.42 9.58 36.01 0.35 -1.07 16 9 C -0.11 -2.17 5.88 -104.54 -0.62 -2.78 16 10 C -0.10 -1.62 9.59 36.00 0.35 -1.28 16 11 C -0.08 -1.98 6.54 -39.51 -0.26 -2.24 16 12 C 0.01 0.25 5.28 -83.86 -0.44 -0.19 16 13 N -0.30 -7.79 2.44 -56.64 -0.14 -7.93 16 14 C -0.36 -9.46 9.79 -14.85 -0.15 -9.60 16 15 H 0.12 3.21 7.67 -52.48 -0.40 2.81 16 16 C 0.09 2.28 4.91 -17.49 -0.09 2.19 16 17 N -0.83 -21.87 13.95 55.49 0.77 -21.09 16 18 Si 0.86 20.72 24.51 -169.99 -4.17 16.55 16 19 H -0.24 -5.61 5.50 56.52 0.31 -5.30 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.26 -6.69 7.11 56.52 0.40 -6.29 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.47 7.48 -51.93 -0.39 1.08 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.06 0.79 5.91 -51.93 -0.31 0.48 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.06 0.86 5.90 -51.93 -0.31 0.55 16 34 H 0.12 2.81 5.81 -52.49 -0.30 2.50 16 35 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 283.64 15.07 4.27 4.27 Total: -1.00 -29.37 283.64 -7.44 -36.81 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.73 Total: 2.06 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.36 Total: -17.79 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.54 Total: -41.91 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.17 Total: 16.55 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.37 -7.44 -36.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031943367.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.750 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds