Wall clock time and date at job start Mon Mar 30 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50704 * 109.47277 * 2 1 4 4 N 1.30098 * 124.97930 * 89.31746 * 3 2 1 5 5 C 1.35895 * 109.73456 * 179.97438 * 4 3 2 6 6 C 1.39679 * 133.50272 * 179.97438 * 5 4 3 7 7 C 1.37709 * 119.77675 * 179.71199 * 6 5 4 8 8 C 1.50702 * 119.74278 * 180.28923 * 7 6 5 9 9 C 1.38728 * 120.51895 * 0.59148 * 7 6 5 10 10 C 1.50698 * 119.78367 * 179.69740 * 9 7 6 11 11 C 1.37964 * 120.43461 * 359.42800 * 9 7 6 12 12 C 1.38714 * 119.82976 * 0.26978 * 11 9 7 13 13 N 1.36534 * 124.98071 * 269.28861 * 3 2 1 14 14 C 1.37311 * 126.39978 * 0.02725 * 13 3 2 15 15 H 1.08006 * 119.99376 * 320.44299 * 14 13 3 16 16 C 1.38912 * 120.00149 * 140.44763 * 14 13 3 17 17 N 1.31387 * 119.99842 * 156.36462 * 16 14 13 18 18 Si 1.86800 * 119.99875 * 336.36024 * 16 14 13 19 19 H 1.48503 * 109.46895 * 95.28807 * 18 16 14 20 20 H 1.48499 * 109.46953 * 215.28799 * 18 16 14 21 21 H 1.48498 * 109.47075 * 335.28402 * 18 16 14 22 22 H 1.09003 * 109.47368 * 302.10064 * 1 2 3 23 23 H 1.09006 * 109.47356 * 62.09499 * 1 2 3 24 24 H 1.09003 * 109.47511 * 182.09537 * 1 2 3 25 25 H 1.09003 * 109.47567 * 239.99972 * 2 1 3 26 26 H 1.08997 * 109.47328 * 119.99914 * 2 1 3 27 27 H 1.07999 * 120.11006 * 0.02876 * 6 5 4 28 28 H 1.09002 * 109.47606 * 270.29978 * 8 7 6 29 29 H 1.08997 * 109.46846 * 30.30103 * 8 7 6 30 30 H 1.09005 * 109.46758 * 150.29772 * 8 7 6 31 31 H 1.08997 * 109.47247 * 269.72866 * 10 9 7 32 32 H 1.08997 * 109.47255 * 149.73031 * 10 9 7 33 33 H 1.08998 * 109.46950 * 29.72958 * 10 9 7 34 34 H 1.07999 * 120.08468 * 180.29135 * 11 9 7 35 35 H 0.96999 * 119.99563 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2689 2.1282 1.0659 5 6 2.7106 3.3628 0.7086 6 6 3.1003 4.4915 1.4332 7 6 3.5158 5.6224 0.7664 8 6 3.9423 6.8376 1.5490 9 6 3.5389 5.6541 -0.6204 10 6 3.9901 6.9028 -1.3332 11 6 3.1567 4.5480 -1.3511 12 6 2.7412 3.3981 -0.6960 13 7 2.3063 2.1542 -1.1186 14 6 2.1749 1.7356 -2.4197 15 1 2.4540 0.7289 -2.6939 16 6 1.6831 2.6070 -3.3834 17 7 1.9729 2.4163 -4.6506 18 14 0.6096 4.0496 -2.8774 19 1 1.4512 5.2638 -2.7268 20 1 -0.4218 4.2882 -3.9187 21 1 -0.0538 3.7435 -1.5846 22 1 -0.3634 0.5461 0.8706 23 1 -0.3634 0.4810 -0.9082 24 1 -0.3634 -1.0270 0.0376 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.0807 4.4756 2.5129 28 1 3.0772 7.4757 1.7295 29 1 4.3682 6.5247 2.5023 30 1 4.6902 7.3913 0.9812 31 1 3.1302 7.5468 -1.5176 32 1 4.4517 6.6324 -2.2829 33 1 4.7147 7.4325 -0.7148 34 1 3.1814 4.5773 -2.4304 35 1 1.6298 3.0250 -5.3234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031943367.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:12 Heat of formation + Delta-G solvation = 36.524970 kcal Electronic energy + Delta-G solvation = -17773.900752 eV Core-core repulsion = 15157.116203 eV Total energy + Delta-G solvation = -2616.784548 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.89562 -39.07796 -36.04917 -34.60334 -33.83838 -32.49464 -31.80721 -28.14017 -27.01658 -26.78999 -24.45276 -22.64480 -22.04401 -20.86937 -19.63638 -17.82132 -17.45671 -16.52263 -16.19359 -15.77850 -15.25923 -15.17405 -14.97408 -14.69169 -14.61712 -14.13635 -13.58421 -13.52695 -13.27636 -13.09566 -12.92317 -12.82160 -12.46027 -12.28306 -12.14374 -12.01279 -11.88902 -11.75433 -11.40631 -10.81962 -10.66989 -9.01367 -8.91785 -8.75998 -6.58810 0.12996 0.72752 1.06628 1.14444 1.25382 1.91937 1.96795 2.37645 2.70498 2.98839 3.40982 3.87973 4.05175 4.21124 4.23342 4.34737 4.43083 4.49354 4.65155 4.66458 4.77938 4.84531 4.87385 4.94255 4.99710 5.04415 5.06189 5.12262 5.26146 5.32046 5.34861 5.47026 5.67178 5.80525 5.91583 5.97751 6.21886 6.60585 7.16535 7.28820 8.18777 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.011862 C = 0.008248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.425520 B = 2359.900193 C = 3393.996757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.030 4.030 3 C 0.220 3.780 4 N -0.539 5.539 5 C 0.008 3.992 6 C -0.087 4.087 7 C -0.102 4.102 8 C -0.099 4.099 9 C -0.099 4.099 10 C -0.105 4.105 11 C -0.120 4.120 12 C -0.017 4.017 13 N -0.327 5.327 14 C -0.369 4.369 15 H 0.102 0.898 16 C 0.063 3.937 17 N -0.856 5.856 18 Si 0.909 3.091 19 H -0.230 1.230 20 H -0.268 1.268 21 H -0.291 1.291 22 H 0.050 0.950 23 H 0.034 0.966 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.138 0.862 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 6.533 7.030 9.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.069 4.069 3 C -0.042 4.042 4 N -0.262 5.262 5 C -0.114 4.114 6 C -0.107 4.107 7 C -0.105 4.105 8 C -0.155 4.155 9 C -0.101 4.101 10 C -0.161 4.161 11 C -0.141 4.141 12 C -0.130 4.130 13 N -0.001 5.001 14 C -0.497 4.497 15 H 0.119 0.881 16 C -0.148 4.148 17 N -0.487 5.487 18 Si 0.733 3.267 19 H -0.153 1.153 20 H -0.193 1.193 21 H -0.217 1.217 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.115 0.885 25 H 0.099 0.901 26 H 0.123 0.877 27 H 0.155 0.845 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.690 6.214 7.412 9.697 hybrid contribution -0.554 0.194 -1.321 1.445 sum 0.137 6.408 6.092 8.843 Atomic orbital electron populations 1.21608 0.93191 1.03323 1.00950 1.20030 0.97166 0.85656 1.04041 1.24310 1.00579 0.98156 0.81141 1.70208 1.24236 1.03607 1.28163 1.19447 1.06661 0.94626 0.90701 1.20223 1.00884 0.90124 0.99444 1.19785 1.01384 0.96548 0.92742 1.20796 1.02016 0.93407 0.99328 1.19782 1.01121 0.95494 0.93706 1.20830 1.01924 0.93390 0.99927 1.20035 1.03557 0.91740 0.98770 1.19388 1.07566 0.90349 0.95703 1.41536 1.43056 1.09178 1.06355 1.19062 1.47823 1.01950 0.80834 0.88080 1.25701 0.95397 0.99242 0.94474 1.69786 1.38570 1.38609 1.01691 0.86437 0.80286 0.82133 0.77852 1.15348 1.19320 1.21679 0.93063 0.94694 0.88485 0.90127 0.87720 0.84465 0.90318 0.90603 0.89556 0.90668 0.92290 0.88212 0.87945 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.89 71.98 0.71 -3.73 16 2 C -0.03 -1.13 6.21 29.85 0.19 -0.94 16 3 C 0.22 10.66 7.08 137.76 0.98 11.64 16 4 N -0.54 -26.59 11.27 -179.55 -2.02 -28.62 16 5 C 0.01 0.40 7.23 39.42 0.28 0.69 16 6 C -0.09 -3.46 9.73 22.49 0.22 -3.24 16 7 C -0.10 -3.49 5.88 -19.87 -0.12 -3.61 16 8 C -0.10 -2.22 9.58 71.24 0.68 -1.54 16 9 C -0.10 -3.71 5.88 -19.81 -0.12 -3.82 16 10 C -0.10 -2.87 9.59 71.24 0.68 -2.19 16 11 C -0.12 -5.62 6.54 22.32 0.15 -5.47 16 12 C -0.02 -0.89 5.28 38.78 0.20 -0.69 16 13 N -0.33 -17.40 2.44 -333.11 -0.81 -18.21 16 14 C -0.37 -20.41 9.79 84.00 0.82 -19.58 16 15 H 0.10 5.76 7.67 -2.91 -0.02 5.74 16 16 C 0.06 3.41 4.91 84.92 0.42 3.83 16 17 N -0.86 -46.53 13.95 21.65 0.30 -46.22 16 18 Si 0.91 43.81 24.51 68.60 1.68 45.49 16 19 H -0.23 -10.39 5.50 99.48 0.55 -9.85 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 22 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.08 3.00 7.48 -2.39 -0.02 2.99 16 26 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 27 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.09 1.58 5.91 -2.38 -0.01 1.57 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.64 8.08 -2.39 -0.02 1.62 16 33 H 0.10 2.06 5.90 -2.39 -0.01 2.05 16 34 H 0.10 4.98 5.81 -2.91 -0.02 4.97 16 35 H 0.29 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -66.28 283.64 5.17 -61.10 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.93 Total: 15.11 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 5.10 Total: -28.66 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -2.53 Total: -93.05 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.68 Total: 45.49 kcal Total: -66.28 5.17 -61.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031943367.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.630 kcal (2) G-P(sol) polarization free energy of solvation -66.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds