Wall clock time and date at job start Mon Mar 30 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38316 * 120.16265 * 2 1 4 4 N 1.39684 * 119.95477 * 0.02562 * 3 2 1 5 5 C 1.39299 * 120.09598 * 180.27723 * 3 2 1 6 6 C 1.50698 * 119.78616 * 179.74235 * 5 3 2 7 7 C 1.38514 * 120.42293 * 359.71934 * 5 3 2 8 8 C 1.50702 * 119.83755 * 179.97438 * 7 5 3 9 9 C 1.47199 * 109.47058 * 269.98183 * 8 7 5 10 10 N 5.71728 * 154.35094 * 270.31625 * 2 1 3 11 11 C 1.37646 * 120.32585 * 359.97438 * 7 5 3 12 12 C 1.50703 * 120.05236 * 180.02562 * 11 7 5 13 13 C 1.40566 * 120.16153 * 179.70293 * 2 1 3 14 14 C 1.41407 * 120.20741 * 359.97438 * 13 2 1 15 15 H 1.08003 * 119.99954 * 133.05572 * 14 13 2 16 16 C 1.39925 * 120.00279 * 313.32863 * 14 13 2 17 17 N 1.30831 * 119.99979 * 340.81586 * 16 14 13 18 18 Si 1.86795 * 120.00171 * 160.82063 * 16 14 13 19 19 H 1.48500 * 109.47317 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47039 * 119.99924 * 18 16 14 21 21 H 1.48504 * 109.47248 * 239.99876 * 18 16 14 22 22 H 1.08996 * 109.47144 * 275.61156 * 1 2 3 23 23 H 1.08998 * 109.47309 * 35.61596 * 1 2 3 24 24 H 1.09002 * 109.46803 * 155.61342 * 1 2 3 25 25 H 0.96998 * 120.00420 * 180.25536 * 4 3 2 26 26 H 0.97002 * 119.99647 * 0.25017 * 4 3 2 27 27 H 1.08999 * 109.47275 * 269.98153 * 6 5 3 28 28 H 1.09003 * 109.47512 * 29.98132 * 6 5 3 29 29 H 1.09001 * 109.47266 * 149.98061 * 6 5 3 30 30 H 1.09004 * 109.47084 * 29.97513 * 8 7 5 31 31 H 1.08997 * 109.47476 * 149.98083 * 8 7 5 32 32 H 1.09000 * 109.47091 * 269.97401 * 12 11 7 33 33 H 1.09000 * 109.47509 * 29.97020 * 12 11 7 34 34 H 1.08996 * 109.47332 * 149.97718 * 12 11 7 35 35 H 0.96997 * 120.00312 * 177.32104 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.1959 0.0000 4 7 1.5060 2.4070 0.0005 5 6 3.5949 1.1943 -0.0058 6 6 4.3451 2.5013 -0.0117 7 6 4.2950 -0.0010 -0.0058 8 6 5.8019 0.0127 -0.0127 9 6 6.2862 0.0130 -1.4028 10 7 6.6609 0.0137 -2.4747 11 6 3.6210 -1.2011 0.0005 12 6 4.3888 -2.4979 0.0011 13 6 2.2133 -1.2153 0.0063 14 6 1.5141 -2.4445 0.0132 15 1 1.8019 -3.2332 -0.6661 16 6 0.4458 -2.6368 0.8962 17 7 0.3210 -1.8700 1.9489 18 14 -0.8022 -3.9883 0.5719 19 1 -0.4384 -4.7095 -0.6741 20 1 -0.8075 -4.9409 1.7111 21 1 -2.1528 -3.3893 0.4214 22 1 -0.3633 0.1005 1.0227 23 1 -0.3634 0.8354 -0.5984 24 1 -0.3633 -0.9360 -0.4243 25 1 1.9927 3.2461 -0.0032 26 1 0.5360 2.4089 0.0046 27 1 4.5219 2.8141 -1.0407 28 1 3.7561 3.2606 0.5028 29 1 5.2998 2.3746 0.4987 30 1 6.1595 0.9076 0.4967 31 1 6.1757 -0.8724 0.5020 32 1 4.5693 -2.8137 -1.0264 33 1 5.3421 -2.3555 0.5100 34 1 3.8105 -3.2623 0.5199 35 1 -0.4406 -1.9777 2.5399 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039186362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:39 Heat of formation + Delta-G solvation = 32.717668 kcal Electronic energy + Delta-G solvation = -17610.516808 eV Core-core repulsion = 14993.567163 eV Total energy + Delta-G solvation = -2616.949645 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.90866 -36.28278 -34.68004 -34.26824 -31.77418 -30.09865 -29.14644 -27.20743 -26.55145 -23.90990 -23.24790 -19.57886 -18.95633 -17.47918 -16.89553 -16.13699 -15.25924 -14.79797 -14.30356 -13.52204 -13.24058 -13.11703 -12.94130 -12.67427 -12.39449 -12.32067 -12.07597 -11.83494 -11.65578 -11.36103 -11.26110 -11.09329 -10.86288 -10.61503 -10.56737 -10.47576 -10.35541 -9.59356 -9.47137 -9.00863 -8.65610 -6.98866 -6.60332 -6.18310 -4.35339 2.65805 2.90544 3.14812 3.19213 3.19892 3.25151 3.34761 4.04987 4.54869 4.77837 4.87898 5.41224 5.59923 5.66850 5.84279 5.94266 6.10668 6.28046 6.34165 6.39633 6.50154 6.70388 6.73693 6.83348 6.93612 7.04875 7.08651 7.25541 7.27890 7.57377 7.77392 7.83500 7.92206 8.06356 8.17136 8.43857 8.67811 8.77212 8.94683 9.03241 10.36783 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024125 B = 0.008748 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.338017 B = 3199.879303 C = 4031.672649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.186 4.186 3 C 0.223 3.777 4 N -0.891 5.891 5 C -0.239 4.239 6 C -0.086 4.086 7 C -0.048 4.048 8 C 0.010 3.990 9 C 0.229 3.771 10 N -0.463 5.463 11 C -0.182 4.182 12 C -0.087 4.087 13 C 0.153 3.847 14 C -0.477 4.477 15 H 0.077 0.923 16 C 0.086 3.914 17 N -0.799 5.799 18 Si 0.886 3.114 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.274 1.274 22 H 0.058 0.942 23 H 0.016 0.984 24 H 0.059 0.941 25 H 0.383 0.617 26 H 0.388 0.612 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.464 4.269 1.261 5.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.192 4.192 3 C 0.122 3.878 4 N -0.433 5.433 5 C -0.244 4.244 6 C -0.143 4.143 7 C -0.050 4.050 8 C -0.030 4.030 9 C -0.087 4.087 10 N -0.140 5.140 11 C -0.184 4.184 12 C -0.144 4.144 13 C 0.151 3.849 14 C -0.508 4.508 15 H 0.095 0.905 16 C -0.129 4.129 17 N -0.426 5.426 18 Si 0.711 3.289 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.200 1.200 22 H 0.076 0.924 23 H 0.035 0.965 24 H 0.078 0.922 25 H 0.210 0.790 26 H 0.216 0.784 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.961 4.210 -0.121 5.148 hybrid contribution -1.162 -0.242 0.436 1.264 sum 1.799 3.968 0.314 4.368 Atomic orbital electron populations 1.20393 0.93364 0.99189 0.99893 1.19396 0.94587 0.90975 1.14223 1.17149 0.90076 0.85467 0.95147 1.42492 1.08164 1.05160 1.87520 1.18441 0.91272 0.93390 1.21281 1.20382 0.98843 0.95373 0.99699 1.18294 0.90158 0.92980 1.03532 1.18295 0.95084 1.05030 0.84550 1.29230 0.91990 0.92306 0.95222 1.81081 1.10845 1.09867 1.12245 1.19673 0.94158 0.92452 1.12127 1.20466 0.97761 0.96553 0.99602 1.16994 0.89493 0.92134 0.86312 1.19238 1.13219 0.99778 1.18558 0.90470 1.25573 0.97239 0.96409 0.93716 1.69885 1.27248 1.36220 1.09239 0.86623 0.81068 0.81743 0.79428 1.18640 1.20342 1.19963 0.92371 0.96527 0.92219 0.78987 0.78405 0.94034 0.93666 0.92904 0.87552 0.87102 0.94279 0.94114 0.91463 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 7.66 36.01 0.28 -1.31 16 2 C -0.19 -4.38 5.59 -103.72 -0.58 -4.96 16 3 C 0.22 4.71 6.70 -83.86 -0.56 4.15 16 4 N -0.89 -15.30 8.88 32.37 0.29 -15.01 16 5 C -0.24 -4.72 5.92 -104.13 -0.62 -5.33 16 6 C -0.09 -1.35 9.15 36.00 0.33 -1.02 16 7 C -0.05 -0.94 5.08 -104.74 -0.53 -1.47 16 8 C 0.01 0.15 5.00 -30.67 -0.15 0.00 16 9 C 0.23 3.94 15.41 -20.78 -0.32 3.62 16 10 N -0.46 -8.90 18.53 42.14 0.78 -8.12 16 11 C -0.18 -4.04 5.94 -103.87 -0.62 -4.66 16 12 C -0.09 -1.71 9.14 36.01 0.33 -1.38 16 13 C 0.15 3.79 5.22 -106.85 -0.56 3.23 16 14 C -0.48 -11.95 6.85 -37.74 -0.26 -12.21 16 15 H 0.08 1.93 7.81 -52.48 -0.41 1.52 16 16 C 0.09 2.08 3.37 -17.35 -0.06 2.02 16 17 N -0.80 -19.84 10.83 55.55 0.60 -19.24 16 18 Si 0.89 18.42 29.58 -169.99 -5.03 13.39 16 19 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H 0.06 1.33 6.95 -51.93 -0.36 0.97 16 23 H 0.02 0.31 6.85 -51.93 -0.36 -0.04 16 24 H 0.06 1.39 5.97 -51.93 -0.31 1.08 16 25 H 0.38 5.61 6.80 -40.82 -0.28 5.33 16 26 H 0.39 6.27 6.94 -40.82 -0.28 5.99 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.64 6.52 -51.93 -0.34 0.30 16 29 H 0.05 0.72 5.92 -51.93 -0.31 0.41 16 30 H 0.11 1.33 5.92 -51.93 -0.31 1.02 16 31 H 0.11 1.48 5.92 -51.93 -0.31 1.17 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.67 5.92 -51.93 -0.31 0.36 16 34 H 0.07 1.39 7.11 -51.93 -0.37 1.02 16 35 H 0.27 6.34 8.30 -40.82 -0.34 6.00 16 LS Contribution 283.39 15.07 4.27 4.27 Total: -1.00 -27.69 283.39 -6.32 -34.02 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.91 Total: 10.01 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -3.32 Total: -19.32 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 1.67 Total: -42.37 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.69 -6.32 -34.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039186362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.733 kcal (2) G-P(sol) polarization free energy of solvation -27.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds