Wall clock time and date at job start Mon Mar 30 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38316 * 120.16265 * 2 1 4 4 N 1.39684 * 119.95477 * 0.02562 * 3 2 1 5 5 C 1.39299 * 120.09598 * 180.27723 * 3 2 1 6 6 C 1.50698 * 119.78616 * 179.74235 * 5 3 2 7 7 C 1.38514 * 120.42293 * 359.71934 * 5 3 2 8 8 C 1.50702 * 119.83755 * 179.97438 * 7 5 3 9 9 C 1.47199 * 109.47058 * 269.98183 * 8 7 5 10 10 N 5.71728 * 154.35094 * 270.31625 * 2 1 3 11 11 C 1.37646 * 120.32585 * 359.97438 * 7 5 3 12 12 C 1.50703 * 120.05236 * 180.02562 * 11 7 5 13 13 C 1.40566 * 120.16153 * 179.70293 * 2 1 3 14 14 C 1.41407 * 120.20741 * 359.97438 * 13 2 1 15 15 H 1.08003 * 119.99954 * 133.05572 * 14 13 2 16 16 C 1.39925 * 120.00279 * 313.32863 * 14 13 2 17 17 N 1.30831 * 119.99979 * 340.81586 * 16 14 13 18 18 Si 1.86795 * 120.00171 * 160.82063 * 16 14 13 19 19 H 1.48500 * 109.47317 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47039 * 119.99924 * 18 16 14 21 21 H 1.48504 * 109.47248 * 239.99876 * 18 16 14 22 22 H 1.08996 * 109.47144 * 275.61156 * 1 2 3 23 23 H 1.08998 * 109.47309 * 35.61596 * 1 2 3 24 24 H 1.09002 * 109.46803 * 155.61342 * 1 2 3 25 25 H 0.96998 * 120.00420 * 180.25536 * 4 3 2 26 26 H 0.97002 * 119.99647 * 0.25017 * 4 3 2 27 27 H 1.08999 * 109.47275 * 269.98153 * 6 5 3 28 28 H 1.09003 * 109.47512 * 29.98132 * 6 5 3 29 29 H 1.09001 * 109.47266 * 149.98061 * 6 5 3 30 30 H 1.09004 * 109.47084 * 29.97513 * 8 7 5 31 31 H 1.08997 * 109.47476 * 149.98083 * 8 7 5 32 32 H 1.09000 * 109.47091 * 269.97401 * 12 11 7 33 33 H 1.09000 * 109.47509 * 29.97020 * 12 11 7 34 34 H 1.08996 * 109.47332 * 149.97718 * 12 11 7 35 35 H 0.96997 * 120.00312 * 177.32104 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.1959 0.0000 4 7 1.5060 2.4070 0.0005 5 6 3.5949 1.1943 -0.0058 6 6 4.3451 2.5013 -0.0117 7 6 4.2950 -0.0010 -0.0058 8 6 5.8019 0.0127 -0.0127 9 6 6.2862 0.0130 -1.4028 10 7 6.6609 0.0137 -2.4747 11 6 3.6210 -1.2011 0.0005 12 6 4.3888 -2.4979 0.0011 13 6 2.2133 -1.2153 0.0063 14 6 1.5141 -2.4445 0.0132 15 1 1.8019 -3.2332 -0.6661 16 6 0.4458 -2.6368 0.8962 17 7 0.3210 -1.8700 1.9489 18 14 -0.8022 -3.9883 0.5719 19 1 -0.4384 -4.7095 -0.6741 20 1 -0.8075 -4.9409 1.7111 21 1 -2.1528 -3.3893 0.4214 22 1 -0.3633 0.1005 1.0227 23 1 -0.3634 0.8354 -0.5984 24 1 -0.3633 -0.9360 -0.4243 25 1 1.9927 3.2461 -0.0032 26 1 0.5360 2.4089 0.0046 27 1 4.5219 2.8141 -1.0407 28 1 3.7561 3.2606 0.5028 29 1 5.2998 2.3746 0.4987 30 1 6.1595 0.9076 0.4967 31 1 6.1757 -0.8724 0.5020 32 1 4.5693 -2.8137 -1.0264 33 1 5.3421 -2.3555 0.5100 34 1 3.8105 -3.2623 0.5199 35 1 -0.4406 -1.9777 2.5399 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039186362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:39 Heat of formation + Delta-G solvation = 17.424561 kcal Electronic energy + Delta-G solvation = -17611.179967 eV Core-core repulsion = 14993.567163 eV Total energy + Delta-G solvation = -2617.612804 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47736 -37.71964 -36.30815 -35.81504 -33.42429 -31.60864 -30.62394 -28.80444 -28.14009 -25.47014 -24.90192 -21.20014 -20.54936 -19.09858 -18.32810 -17.61789 -16.94826 -16.33683 -15.73632 -15.00027 -14.81419 -14.66784 -14.44592 -14.31102 -13.87105 -13.80817 -13.50897 -13.33855 -13.22438 -12.94703 -12.83910 -12.68884 -12.52580 -12.18827 -12.09279 -12.05873 -11.79798 -11.20364 -11.11178 -10.64010 -10.33563 -8.71021 -8.36892 -7.74592 -6.19153 1.04885 1.24024 1.43021 1.52811 1.53279 1.92544 1.96216 2.32344 2.89703 3.32728 3.45790 3.75441 4.26937 4.46105 4.54575 4.59147 4.69946 4.80930 4.93355 5.04557 5.07993 5.15982 5.18281 5.22033 5.33445 5.36842 5.43225 5.52941 5.67813 5.92483 6.13840 6.20738 6.32039 6.44831 6.72247 6.74846 7.05720 7.16836 7.27670 7.39839 8.59591 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024125 B = 0.008748 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.338017 B = 3199.879303 C = 4031.672649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.216 4.216 3 C 0.211 3.789 4 N -0.878 5.878 5 C -0.240 4.240 6 C -0.085 4.085 7 C -0.049 4.049 8 C 0.016 3.984 9 C 0.248 3.752 10 N -0.502 5.502 11 C -0.209 4.209 12 C -0.080 4.080 13 C 0.116 3.884 14 C -0.503 4.503 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.829 5.829 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.269 1.269 22 H 0.046 0.954 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.397 0.603 26 H 0.393 0.607 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.135 0.865 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.759 5.792 1.684 7.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.222 4.222 3 C 0.108 3.892 4 N -0.421 5.421 5 C -0.245 4.245 6 C -0.142 4.142 7 C -0.051 4.051 8 C -0.023 4.023 9 C -0.068 4.068 10 N -0.180 5.180 11 C -0.211 4.211 12 C -0.137 4.137 13 C 0.114 3.886 14 C -0.535 4.535 15 H 0.080 0.920 16 C -0.155 4.155 17 N -0.457 5.457 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.194 1.194 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.228 0.772 26 H 0.221 0.779 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.255 5.761 0.297 7.168 hybrid contribution -1.487 -0.589 0.281 1.624 sum 2.768 5.172 0.577 5.895 Atomic orbital electron populations 1.20231 0.93214 0.98945 0.99257 1.19653 0.95172 0.91895 1.15462 1.17361 0.91131 0.85923 0.94818 1.42381 1.08486 1.04647 1.86613 1.19040 0.91157 0.95464 1.18814 1.20450 0.99837 0.93290 1.00589 1.18671 0.92694 0.92033 1.01694 1.18464 0.91835 1.08114 0.83848 1.29483 0.91048 0.91052 0.95229 1.81113 1.12078 1.11413 1.13398 1.20032 0.93787 0.94493 1.12803 1.20407 0.98711 0.95033 0.99519 1.17370 0.91096 0.92462 0.87683 1.19280 1.14893 1.00078 1.19242 0.92038 1.26047 0.98221 0.98036 0.93206 1.69922 1.27951 1.37907 1.09958 0.85788 0.79248 0.79531 0.78935 1.19156 1.19886 1.19401 0.93597 0.94425 0.94202 0.77250 0.77874 0.93591 0.92145 0.90205 0.83764 0.84719 0.94600 0.90727 0.93566 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.70 7.66 71.24 0.55 -2.15 16 2 C -0.22 -10.26 5.59 -19.28 -0.11 -10.37 16 3 C 0.21 8.61 6.70 38.16 0.26 8.87 16 4 N -0.88 -28.27 8.88 -51.49 -0.46 -28.73 16 5 C -0.24 -8.82 5.92 -19.54 -0.12 -8.93 16 6 C -0.09 -2.29 9.15 71.24 0.65 -1.63 16 7 C -0.05 -1.81 5.08 -19.94 -0.10 -1.91 16 8 C 0.02 0.43 5.00 28.04 0.14 0.57 16 9 C 0.25 7.77 15.41 89.45 1.38 9.15 16 10 N -0.50 -18.28 18.53 20.00 0.37 -17.91 16 11 C -0.21 -9.20 5.94 -19.38 -0.12 -9.32 16 12 C -0.08 -3.11 9.14 71.24 0.65 -2.46 16 13 C 0.12 5.88 5.22 -21.31 -0.11 5.77 16 14 C -0.50 -26.27 6.85 23.46 0.16 -26.11 16 15 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 16 C 0.06 2.86 3.37 85.25 0.29 3.15 16 17 N -0.83 -42.32 10.83 21.82 0.24 -42.09 16 18 Si 0.94 38.95 29.58 68.60 2.03 40.98 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H 0.05 2.14 6.95 -2.39 -0.02 2.13 16 23 H 0.04 1.45 6.85 -2.39 -0.02 1.44 16 24 H 0.04 1.91 5.97 -2.39 -0.01 1.89 16 25 H 0.40 10.40 6.80 -92.71 -0.63 9.77 16 26 H 0.39 12.03 6.94 -92.71 -0.64 11.39 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.45 6.52 -2.39 -0.02 1.43 16 29 H 0.08 1.72 5.92 -2.39 -0.01 1.71 16 30 H 0.14 2.76 5.92 -2.38 -0.01 2.75 16 31 H 0.14 2.97 5.92 -2.39 -0.01 2.96 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 2.28 5.92 -2.39 -0.01 2.27 16 34 H 0.05 1.95 7.11 -2.39 -0.02 1.93 16 35 H 0.28 13.14 8.30 -92.71 -0.77 12.37 16 Total: -1.00 -61.68 283.39 5.58 -56.10 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.12 Total: 27.04 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 3.52 Total: -35.39 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: 0.15 Total: -88.73 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -61.68 5.58 -56.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039186362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.522 kcal (2) G-P(sol) polarization free energy of solvation -61.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds