Wall clock time and date at job start Mon Mar 30 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38131 * 120.03760 * 2 1 4 4 C 1.38259 * 120.07478 * 179.97438 * 3 2 1 5 5 C 1.38306 * 120.15191 * 0.02562 * 4 3 2 6 6 C 1.38088 * 120.07597 * 359.75250 * 5 4 3 7 7 C 1.38896 * 120.04106 * 179.97438 * 2 1 3 8 8 N 1.39679 * 120.07163 * 359.97438 * 7 2 1 9 9 C 1.46893 * 110.99775 * 116.04775 * 8 7 2 10 10 C 1.50706 * 109.47176 * 189.99811 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.47104 * 209.99992 * 14 12 10 17 17 H 1.48495 * 109.47249 * 329.99739 * 14 12 10 18 18 C 1.46896 * 110.99875 * 240.00743 * 8 7 2 19 19 C 1.52994 * 109.47603 * 66.04645 * 18 8 7 20 20 C 1.47201 * 109.47541 * 180.02562 * 19 18 8 21 21 N 6.01601 * 93.91268 * 130.69233 * 2 1 3 22 22 H 1.09006 * 109.46942 * 270.01973 * 1 2 3 23 23 H 1.08997 * 109.47780 * 30.01690 * 1 2 3 24 24 H 1.09006 * 109.47200 * 150.02185 * 1 2 3 25 25 H 1.07994 * 119.95948 * 359.97438 * 3 2 1 26 26 H 1.07999 * 119.92765 * 180.02562 * 4 3 2 27 27 H 1.08001 * 119.96695 * 179.97438 * 5 4 3 28 28 H 1.07993 * 120.04267 * 180.26599 * 6 5 4 29 29 H 1.09001 * 109.46739 * 70.00220 * 9 8 7 30 30 H 1.09000 * 109.47767 * 310.00479 * 9 8 7 31 31 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.46942 * 186.04988 * 18 8 7 33 33 H 1.09000 * 109.47299 * 306.04056 * 18 8 7 34 34 H 1.09000 * 109.46985 * 299.99692 * 19 18 8 35 35 H 1.09005 * 109.47527 * 60.00080 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1967 0.0005 5 6 4.2765 0.0012 0.0005 6 6 3.5916 -1.1978 0.0052 7 6 2.2023 -1.2024 0.0005 8 7 1.5063 -2.4134 0.0016 9 6 1.7656 -3.1707 -1.2301 10 6 0.8205 -4.3419 -1.3081 11 1 0.0990 -4.5068 -0.5216 12 6 0.8768 -5.2027 -2.3836 13 7 1.7558 -5.0021 -3.3411 14 14 -0.2952 -6.6541 -2.4806 15 1 -1.5332 -6.2440 -3.1910 16 1 0.3543 -7.7663 -3.2198 17 1 -0.6386 -7.1057 -1.1083 18 6 1.8388 -3.2106 1.1898 19 6 1.3282 -2.4962 2.4426 20 6 1.6619 -3.2948 3.6333 21 7 1.9175 -3.9133 4.5508 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6584 2.1310 -0.0004 26 1 4.1192 2.1330 0.0010 27 1 5.3565 0.0054 0.0005 28 1 4.1352 -2.1310 0.0095 29 1 2.7936 -3.5331 -1.2240 30 1 1.6139 -2.5231 -2.0936 31 1 1.7951 -5.6076 -4.0980 32 1 1.3681 -4.1907 1.1131 33 1 2.9201 -3.3311 1.2555 34 1 1.7990 -1.5162 2.5194 35 1 0.2468 -2.3758 2.3770 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041227040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:20 Heat of formation + Delta-G solvation = 50.764641 kcal Electronic energy + Delta-G solvation = -17163.334581 eV Core-core repulsion = 14547.167511 eV Total energy + Delta-G solvation = -2616.167070 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -39.64686 -36.89414 -35.87801 -32.78805 -32.31019 -31.18008 -29.32234 -26.87898 -25.81809 -23.59205 -22.63776 -20.99588 -19.87975 -17.26551 -16.76490 -16.02958 -15.33465 -15.06416 -14.72871 -14.58779 -13.86226 -13.62263 -13.33742 -12.98333 -12.72704 -12.41191 -12.33319 -12.07259 -11.93291 -11.68956 -11.53178 -11.08943 -11.00579 -10.85194 -10.73139 -10.60111 -10.46905 -10.06511 -9.37269 -8.52864 -8.43069 -8.08530 -7.57643 -6.10844 -4.13586 1.70110 1.73463 2.94326 2.98950 3.28205 3.35006 3.37612 4.08421 4.12619 4.37921 4.86800 5.21825 5.24994 5.26232 5.33970 5.39720 5.45557 5.64397 5.76677 5.82165 6.03171 6.07112 6.12750 6.25016 6.29294 6.48192 6.66876 6.79530 6.83053 7.00428 7.08487 7.23325 7.36579 7.73031 7.75702 7.90103 8.05896 8.47134 8.93073 9.51362 10.99579 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.007896 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.677944 B = 3545.256454 C = 4466.405958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.069 4.069 3 C -0.122 4.122 4 C -0.134 4.134 5 C -0.121 4.121 6 C -0.147 4.147 7 C 0.107 3.893 8 N -0.501 5.501 9 C 0.202 3.798 10 C -0.514 4.514 11 H 0.067 0.933 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.071 3.929 19 C -0.028 4.028 20 C 0.219 3.781 21 N -0.454 5.454 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.118 0.882 29 H -0.002 1.002 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.099 0.901 33 H 0.035 0.965 34 H 0.100 0.900 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 10.964 6.122 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.152 4.152 5 C -0.140 4.140 6 C -0.167 4.167 7 C 0.013 3.987 8 N -0.223 5.223 9 C 0.079 3.921 10 C -0.552 4.552 11 H 0.085 0.915 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.057 4.057 19 C -0.069 4.069 20 C -0.098 4.098 21 N -0.132 5.132 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.106 0.894 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.136 0.864 29 H 0.016 0.984 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.053 0.947 34 H 0.118 0.882 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.457 10.029 7.322 12.426 hybrid contribution 0.363 -0.725 -0.717 1.082 sum 0.820 9.304 6.605 11.440 Atomic orbital electron populations 1.20662 0.90797 1.03046 1.01769 1.19867 0.96504 0.91434 0.99179 1.20922 0.94066 0.97197 1.01851 1.20991 0.94339 0.97544 1.02292 1.20938 0.99309 0.92496 1.01224 1.21777 0.95346 0.98279 1.01292 1.18980 0.89981 0.92147 0.97600 1.59835 1.55438 1.02655 1.04343 1.19781 0.95680 0.92266 0.84343 1.21124 1.18256 1.09106 1.06734 0.91530 1.24971 0.95753 0.98076 0.95576 1.69959 1.35135 1.38063 1.10229 0.86507 0.80871 0.81893 0.78214 1.20555 1.21337 1.19792 1.21946 0.98530 0.98027 0.87214 1.19402 1.04428 0.96863 0.86197 1.29289 0.92702 0.93541 0.94298 1.81148 1.09729 1.09972 1.12305 0.91893 0.92960 0.89369 0.86498 0.86845 0.86888 0.86383 0.98438 0.94686 0.92795 0.88256 0.94716 0.88154 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.77 36.00 0.35 -1.07 16 2 C -0.07 -1.03 5.90 -104.42 -0.62 -1.64 16 3 C -0.12 -1.60 9.70 -39.61 -0.38 -1.98 16 4 C -0.13 -1.71 10.04 -39.55 -0.40 -2.11 16 5 C -0.12 -1.69 10.04 -39.61 -0.40 -2.09 16 6 C -0.15 -2.39 8.61 -39.38 -0.34 -2.73 16 7 C 0.11 1.81 3.53 -83.78 -0.30 1.51 16 8 N -0.50 -9.34 3.43 -172.48 -0.59 -9.93 16 9 C 0.20 4.81 4.37 -4.98 -0.02 4.79 16 10 C -0.51 -13.27 8.37 -34.44 -0.29 -13.56 16 11 H 0.07 1.67 7.18 -52.49 -0.38 1.29 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 14 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 18 C 0.07 1.19 4.62 -3.83 -0.02 1.17 16 19 C -0.03 -0.37 5.68 -29.52 -0.17 -0.54 16 20 C 0.22 3.23 15.43 -20.77 -0.32 2.91 16 21 N -0.45 -7.74 18.53 42.14 0.78 -6.96 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 24 H 0.09 1.40 7.46 -51.93 -0.39 1.01 16 25 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 26 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.12 1.98 7.11 -52.49 -0.37 1.61 16 29 H 0.00 -0.06 7.69 -51.93 -0.40 -0.46 16 30 H 0.04 0.93 8.06 -51.93 -0.42 0.51 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.10 1.83 6.65 -51.93 -0.35 1.49 16 33 H 0.03 0.58 6.92 -51.93 -0.36 0.22 16 34 H 0.10 1.20 7.40 -51.93 -0.38 0.82 16 35 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 302.92 15.07 4.56 4.56 Total: -1.00 -28.90 302.92 -7.23 -36.13 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.71 Total: -0.93 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -2.99 Total: -13.87 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.93 Total: -41.65 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.90 -7.23 -36.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041227040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.898 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds