Wall clock time and date at job start Mon Mar 30 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38131 * 120.03760 * 2 1 4 4 C 1.38259 * 120.07478 * 179.97438 * 3 2 1 5 5 C 1.38306 * 120.15191 * 0.02562 * 4 3 2 6 6 C 1.38088 * 120.07597 * 359.75250 * 5 4 3 7 7 C 1.38896 * 120.04106 * 179.97438 * 2 1 3 8 8 N 1.39679 * 120.07163 * 359.97438 * 7 2 1 9 9 C 1.46893 * 110.99775 * 116.04775 * 8 7 2 10 10 C 1.50706 * 109.47176 * 189.99811 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.47104 * 209.99992 * 14 12 10 17 17 H 1.48495 * 109.47249 * 329.99739 * 14 12 10 18 18 C 1.46896 * 110.99875 * 240.00743 * 8 7 2 19 19 C 1.52994 * 109.47603 * 66.04645 * 18 8 7 20 20 C 1.47201 * 109.47541 * 180.02562 * 19 18 8 21 21 N 6.01601 * 93.91268 * 130.69233 * 2 1 3 22 22 H 1.09006 * 109.46942 * 270.01973 * 1 2 3 23 23 H 1.08997 * 109.47780 * 30.01690 * 1 2 3 24 24 H 1.09006 * 109.47200 * 150.02185 * 1 2 3 25 25 H 1.07994 * 119.95948 * 359.97438 * 3 2 1 26 26 H 1.07999 * 119.92765 * 180.02562 * 4 3 2 27 27 H 1.08001 * 119.96695 * 179.97438 * 5 4 3 28 28 H 1.07993 * 120.04267 * 180.26599 * 6 5 4 29 29 H 1.09001 * 109.46739 * 70.00220 * 9 8 7 30 30 H 1.09000 * 109.47767 * 310.00479 * 9 8 7 31 31 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.46942 * 186.04988 * 18 8 7 33 33 H 1.09000 * 109.47299 * 306.04056 * 18 8 7 34 34 H 1.09000 * 109.46985 * 299.99692 * 19 18 8 35 35 H 1.09005 * 109.47527 * 60.00080 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1967 0.0005 5 6 4.2765 0.0012 0.0005 6 6 3.5916 -1.1978 0.0052 7 6 2.2023 -1.2024 0.0005 8 7 1.5063 -2.4134 0.0016 9 6 1.7656 -3.1707 -1.2301 10 6 0.8205 -4.3419 -1.3081 11 1 0.0990 -4.5068 -0.5216 12 6 0.8768 -5.2027 -2.3836 13 7 1.7558 -5.0021 -3.3411 14 14 -0.2952 -6.6541 -2.4806 15 1 -1.5332 -6.2440 -3.1910 16 1 0.3543 -7.7663 -3.2198 17 1 -0.6386 -7.1057 -1.1083 18 6 1.8388 -3.2106 1.1898 19 6 1.3282 -2.4962 2.4426 20 6 1.6619 -3.2948 3.6333 21 7 1.9175 -3.9133 4.5508 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6584 2.1310 -0.0004 26 1 4.1192 2.1330 0.0010 27 1 5.3565 0.0054 0.0005 28 1 4.1352 -2.1310 0.0095 29 1 2.7936 -3.5331 -1.2240 30 1 1.6139 -2.5231 -2.0936 31 1 1.7951 -5.6076 -4.0980 32 1 1.3681 -4.1907 1.1131 33 1 2.9201 -3.3311 1.2555 34 1 1.7990 -1.5162 2.5194 35 1 0.2468 -2.3758 2.3770 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041227040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:20 Heat of formation + Delta-G solvation = 35.472577 kcal Electronic energy + Delta-G solvation = -17163.997695 eV Core-core repulsion = 14547.167511 eV Total energy + Delta-G solvation = -2616.830184 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90077 -38.15802 -37.23979 -34.75350 -33.42210 -32.47592 -30.75061 -28.42386 -27.12081 -25.03706 -24.25172 -22.20886 -21.17654 -18.62535 -18.43087 -17.48617 -16.67228 -16.54815 -16.19169 -15.80270 -15.31807 -14.88277 -14.67939 -14.17012 -14.06516 -13.94074 -13.79419 -13.48183 -13.32450 -12.91888 -12.84614 -12.66354 -12.57414 -12.27128 -12.06227 -11.99230 -11.86451 -11.76232 -11.28437 -10.59208 -9.57024 -9.27886 -9.12095 -8.17928 -6.27365 0.54208 0.61440 1.44567 1.44709 1.55233 1.70735 1.79003 2.41905 2.86944 2.95967 3.16213 3.53154 4.09405 4.13964 4.19393 4.24225 4.33647 4.60317 4.61965 4.71158 4.87957 4.95488 5.03050 5.08720 5.13923 5.20208 5.23808 5.29999 5.60224 5.68786 5.69745 5.72946 5.90954 6.09829 6.18731 6.21267 6.55728 6.87876 6.88681 7.42294 8.92923 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.007896 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.677944 B = 3545.256454 C = 4466.405958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.075 4.075 3 C -0.118 4.118 4 C -0.124 4.124 5 C -0.126 4.126 6 C -0.166 4.166 7 C 0.076 3.924 8 N -0.492 5.492 9 C 0.222 3.778 10 C -0.519 4.519 11 H 0.073 0.927 12 C 0.003 3.997 13 N -0.934 5.934 14 Si 0.963 3.037 15 H -0.273 1.273 16 H -0.288 1.288 17 H -0.263 1.263 18 C 0.072 3.928 19 C -0.009 4.009 20 C 0.242 3.758 21 N -0.493 5.493 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.132 0.868 28 H 0.097 0.903 29 H -0.034 1.034 30 H 0.001 0.999 31 H 0.263 0.737 32 H 0.077 0.923 33 H 0.026 0.974 34 H 0.120 0.880 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 12.973 7.120 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.076 4.076 3 C -0.136 4.136 4 C -0.142 4.142 5 C -0.145 4.145 6 C -0.187 4.187 7 C -0.018 4.018 8 N -0.212 5.212 9 C 0.098 3.902 10 C -0.557 4.557 11 H 0.091 0.909 12 C -0.195 4.195 13 N -0.575 5.575 14 Si 0.789 3.211 15 H -0.198 1.198 16 H -0.214 1.214 17 H -0.188 1.188 18 C -0.057 4.057 19 C -0.050 4.050 20 C -0.075 4.075 21 N -0.171 5.171 22 H 0.104 0.896 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.168 0.832 26 H 0.166 0.834 27 H 0.150 0.850 28 H 0.115 0.885 29 H -0.016 1.016 30 H 0.019 0.981 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.138 0.862 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.495 12.054 8.348 14.670 hybrid contribution 0.730 -1.228 -1.038 1.766 sum 0.235 10.825 7.310 13.064 Atomic orbital electron populations 1.20653 0.89769 1.02458 1.03052 1.20105 0.97406 0.91253 0.98803 1.21304 0.94418 0.97636 1.00216 1.21415 0.94536 0.98259 0.99990 1.21198 1.00442 0.92127 1.00703 1.21747 0.95367 0.98651 1.02893 1.19086 0.90363 0.91875 1.00504 1.59671 1.55842 1.02928 1.02795 1.19299 0.93434 0.91596 0.85897 1.21493 1.18188 1.09484 1.06572 0.90906 1.25848 0.97348 1.00930 0.95342 1.70096 1.37065 1.39331 1.10993 0.85465 0.78757 0.78390 0.78523 1.19824 1.21430 1.18759 1.21874 0.98028 0.97459 0.88291 1.19300 1.05746 0.96597 0.83307 1.29433 0.91469 0.92656 0.93922 1.81173 1.11141 1.11075 1.13705 0.89623 0.90996 0.92455 0.83212 0.83411 0.85039 0.88464 1.01632 0.98079 0.92858 0.90418 0.95585 0.86223 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 9.77 71.23 0.70 -1.82 16 2 C -0.07 -2.08 5.90 -19.73 -0.12 -2.20 16 3 C -0.12 -2.65 9.70 22.25 0.22 -2.43 16 4 C -0.12 -2.74 10.04 22.29 0.22 -2.51 16 5 C -0.13 -3.32 10.04 22.25 0.22 -3.10 16 6 C -0.17 -5.49 8.61 22.40 0.19 -5.29 16 7 C 0.08 2.55 3.53 38.21 0.13 2.68 16 8 N -0.49 -18.76 3.43 -699.60 -2.40 -21.16 16 9 C 0.22 11.14 4.37 85.56 0.37 11.52 16 10 C -0.52 -27.59 8.37 25.60 0.21 -27.37 16 11 H 0.07 3.70 7.18 -2.91 -0.02 3.68 16 12 C 0.00 0.19 5.46 84.65 0.46 0.65 16 13 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 14 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 18 C 0.07 2.44 4.62 86.30 0.40 2.83 16 19 C -0.01 -0.23 5.68 28.79 0.16 -0.07 16 20 C 0.24 6.86 15.43 89.45 1.38 8.24 16 21 N -0.49 -16.49 18.53 20.00 0.37 -16.12 16 22 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 23 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 24 H 0.06 1.77 7.46 -2.38 -0.02 1.76 16 25 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 26 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 27 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 28 H 0.10 3.50 7.11 -2.91 -0.02 3.48 16 29 H -0.03 -1.88 7.69 -2.39 -0.02 -1.90 16 30 H 0.00 0.06 8.06 -2.39 -0.02 0.04 16 31 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.08 2.94 6.65 -2.39 -0.02 2.93 16 33 H 0.03 0.91 6.92 -2.39 -0.02 0.90 16 34 H 0.12 2.57 7.40 -2.39 -0.02 2.56 16 35 H 0.14 2.83 8.14 -2.38 -0.02 2.81 16 Total: -1.00 -64.81 302.92 5.92 -58.89 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.07 Total: 6.93 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 4.56 Total: -18.87 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -1.75 Total: -92.07 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -64.81 5.92 -58.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041227040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.363 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds