Wall clock time and date at job start Mon Mar 30 2020 07:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47172 * 2 1 4 4 C 1.46899 * 111.00152 * 193.95291 * 3 2 1 5 5 C 1.50700 * 109.47104 * 66.04332 * 4 3 2 6 6 H 1.07998 * 120.00457 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99938 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00051 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99830 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47143 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46982 * 120.00010 * 9 7 5 12 12 H 1.48501 * 109.46697 * 240.00206 * 9 7 5 13 13 C 1.39188 * 111.00089 * 69.99752 * 3 2 1 14 14 C 1.39199 * 119.92224 * 63.67671 * 13 3 2 15 15 C 1.37628 * 120.07392 * 180.27406 * 14 13 3 16 16 C 1.39821 * 119.92752 * 0.02812 * 15 14 13 17 17 C 1.43201 * 120.07828 * 179.97438 * 16 15 14 18 18 N 7.38211 * 84.15557 * 53.57259 * 2 1 3 19 19 C 1.39795 * 119.84758 * 359.97438 * 16 15 14 20 20 C 1.37665 * 119.92371 * 0.02562 * 19 16 15 21 21 C 1.50697 * 119.96330 * 179.97438 * 20 19 16 22 22 H 1.09004 * 109.46905 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47308 * 300.00021 * 1 2 3 24 24 H 1.09007 * 109.47019 * 60.00314 * 1 2 3 25 25 H 1.09006 * 109.47313 * 239.99846 * 2 1 3 26 26 H 1.08999 * 109.47092 * 119.99997 * 2 1 3 27 27 H 1.08999 * 109.47207 * 186.04660 * 4 3 2 28 28 H 1.09003 * 109.47194 * 306.04533 * 4 3 2 29 29 H 0.96996 * 120.00306 * 179.97438 * 8 7 5 30 30 H 1.08007 * 119.96364 * 0.25684 * 14 13 3 31 31 H 1.08010 * 120.03594 * 179.97438 * 15 14 13 32 32 H 1.08001 * 120.03530 * 180.02562 * 19 16 15 33 33 H 1.08999 * 109.47320 * 270.02034 * 21 20 19 34 34 H 1.09004 * 109.47009 * 30.02421 * 21 20 19 35 35 H 1.09001 * 109.47451 * 150.02233 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4499 1.4377 -0.3307 5 6 3.6535 0.9854 -1.7537 6 1 2.8052 0.6889 -2.3528 7 6 4.9228 0.9511 -2.2913 8 7 5.9558 1.3127 -1.5621 9 14 5.1750 0.3912 -4.0555 10 1 3.8628 0.0413 -4.6562 11 1 5.8006 1.4873 -4.8380 12 1 6.0621 -0.7996 -4.0747 13 6 1.7668 2.0034 1.2210 14 6 2.3704 1.5242 2.3802 15 6 2.1183 2.1299 3.5901 16 6 1.2543 3.2273 3.6542 17 6 0.9892 3.8596 4.9114 18 7 0.7782 4.3607 5.9088 19 6 0.6498 3.7059 2.4881 20 6 0.9064 3.0954 1.2812 21 6 0.2548 3.6103 0.0237 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8112 2.4600 -0.2191 28 1 4.0027 0.7816 0.3417 29 1 6.8487 1.2883 -1.9401 30 1 3.0372 0.6760 2.3302 31 1 2.5866 1.7573 4.4892 32 1 -0.0178 4.5537 2.5340 33 1 -0.6967 3.1005 -0.1274 34 1 0.0819 4.6825 0.1168 35 1 0.9079 3.4203 -0.8281 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042451204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:57 Heat of formation + Delta-G solvation = 52.156959 kcal Electronic energy + Delta-G solvation = -17057.819993 eV Core-core repulsion = 14441.713299 eV Total energy + Delta-G solvation = -2616.106695 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -39.88316 -37.13880 -35.75608 -32.82346 -32.52143 -30.82461 -29.53580 -27.00113 -26.05512 -23.46614 -22.53989 -21.64888 -20.31266 -18.05079 -16.68741 -15.79840 -15.54541 -15.06831 -14.32121 -14.13553 -13.78897 -13.66782 -13.25719 -13.04038 -12.87917 -12.77998 -12.46428 -12.27702 -11.99676 -11.57352 -11.41884 -11.20859 -11.11174 -10.97377 -10.75735 -10.62968 -10.36840 -10.07382 -9.35655 -8.67729 -8.54750 -8.22338 -7.57765 -6.12443 -4.14777 0.95047 1.54142 2.72707 3.06130 3.25576 3.33885 3.37546 3.99851 4.01945 4.33110 4.64148 4.99975 5.06624 5.23748 5.39894 5.53322 5.65201 5.68243 5.84937 5.88648 6.03051 6.03988 6.12105 6.22871 6.35650 6.43515 6.52659 6.63274 6.68664 6.87083 6.93899 7.18748 7.23209 7.54810 7.72667 7.91567 8.04006 8.45717 8.92363 9.50047 10.98194 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030411 B = 0.005779 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.490611 B = 4843.909877 C = 5144.729352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 N -0.510 5.510 4 C 0.198 3.802 5 C -0.511 4.511 6 H 0.067 0.933 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.155 3.845 14 C -0.152 4.152 15 C -0.066 4.066 16 C -0.056 4.056 17 C 0.268 3.732 18 N -0.441 5.441 19 C -0.068 4.068 20 C -0.074 4.074 21 C -0.104 4.104 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.026 0.974 27 H 0.033 0.967 28 H -0.002 1.002 29 H 0.262 0.738 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 0.109 4.530 10.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 N -0.232 5.232 4 C 0.075 3.925 5 C -0.550 4.550 6 H 0.085 0.915 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.211 1.211 13 C 0.059 3.941 14 C -0.173 4.173 15 C -0.087 4.087 16 C -0.060 4.060 17 C -0.047 4.047 18 N -0.116 5.116 19 C -0.089 4.089 20 C -0.075 4.075 21 C -0.161 4.161 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.016 0.984 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.926 1.146 5.670 11.489 hybrid contribution 0.990 -0.904 -0.601 1.469 sum -8.936 0.242 5.069 10.277 Atomic orbital electron populations 1.21809 0.96267 1.00543 1.01784 1.22062 0.94341 0.88423 1.01658 1.59806 1.22452 1.16431 1.24504 1.19824 0.78692 0.97438 0.96502 1.21145 0.92778 1.44107 0.96926 0.91520 1.24978 0.95924 0.95437 0.98069 1.69960 0.98965 1.47986 1.36569 0.86441 0.78249 0.78263 0.84481 1.19573 1.20985 1.21098 1.19258 0.91987 0.93129 0.89747 1.21780 1.01257 1.01575 0.92667 1.20932 0.95827 0.93705 0.98235 1.15948 1.04290 0.98951 0.86777 1.25831 0.92999 0.93004 0.92833 1.81205 1.09530 1.09633 1.11282 1.20910 0.98411 0.99154 0.90450 1.19787 0.97467 0.95231 0.94998 1.20663 1.00561 0.99127 0.95754 0.93139 0.93558 0.92075 0.88972 0.95606 0.94874 0.98404 0.92830 0.85150 0.85701 0.85392 0.91634 0.92638 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.94 37.15 0.37 -1.68 16 2 C 0.06 1.05 5.44 -3.83 -0.02 1.03 16 3 N -0.51 -9.68 3.37 -172.46 -0.58 -10.26 16 4 C 0.20 4.70 4.30 -4.98 -0.02 4.68 16 5 C -0.51 -13.21 8.31 -34.44 -0.29 -13.50 16 6 H 0.07 1.70 7.23 -52.49 -0.38 1.32 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.33 13.29 55.43 0.74 -24.59 16 9 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.15 2.58 3.71 -83.82 -0.31 2.27 16 14 C -0.15 -2.36 8.49 -39.45 -0.33 -2.69 16 15 C -0.07 -0.88 9.75 -39.21 -0.38 -1.26 16 16 C -0.06 -0.74 5.74 -106.80 -0.61 -1.36 16 17 C 0.27 3.72 15.33 -22.47 -0.34 3.38 16 18 N -0.44 -6.85 18.54 41.84 0.78 -6.08 16 19 C -0.07 -0.88 9.39 -39.21 -0.37 -1.24 16 20 C -0.07 -1.07 5.89 -104.49 -0.62 -1.69 16 21 C -0.10 -1.39 9.76 36.00 0.35 -1.04 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.63 7.52 -51.93 -0.39 0.24 16 24 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 25 H 0.09 1.74 6.60 -51.93 -0.34 1.40 16 26 H 0.03 0.43 7.03 -51.93 -0.37 0.06 16 27 H 0.03 0.87 8.06 -51.93 -0.42 0.45 16 28 H 0.00 -0.05 7.46 -51.93 -0.39 -0.43 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.13 2.05 7.11 -52.48 -0.37 1.68 16 31 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.09 1.44 7.45 -51.93 -0.39 1.05 16 LS Contribution 302.96 15.07 4.57 4.57 Total: -1.00 -27.88 302.96 -6.91 -34.79 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.71 Total: -2.28 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -2.67 Total: -11.65 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.93 Total: -40.93 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.88 -6.91 -34.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.948 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds