Wall clock time and date at job start Mon Mar 30 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47450 * 2 1 4 4 H 1.08999 * 109.47117 * 54.99822 * 3 2 1 5 5 C 1.47202 * 109.47084 * 175.00072 * 3 2 1 6 6 N 3.43548 * 154.82781 * 8.43086 * 2 1 3 7 7 N 1.46507 * 109.47034 * 295.00269 * 3 2 1 8 8 C 1.46497 * 119.99967 * 304.59792 * 7 3 2 9 9 C 1.50697 * 109.47090 * 270.00073 * 8 7 3 10 10 H 1.08007 * 120.00156 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00291 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99665 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00222 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46955 * 90.00136 * 13 11 9 15 15 H 1.48498 * 109.46965 * 210.00118 * 13 11 9 16 16 H 1.48500 * 109.47101 * 329.99776 * 13 11 9 17 17 C 1.39672 * 119.99939 * 124.59943 * 7 3 2 18 18 C 1.38917 * 120.07422 * 354.21767 * 17 7 3 19 19 C 1.38097 * 119.92509 * 180.02562 * 18 17 7 20 20 C 1.38288 * 120.07685 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.14674 * 0.28256 * 20 19 18 22 22 C 1.38110 * 120.07542 * 359.44292 * 21 20 19 23 23 H 1.09002 * 109.47298 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46661 * 299.99837 * 1 2 3 25 25 H 1.09001 * 109.46688 * 59.99803 * 1 2 3 26 26 H 1.09002 * 109.46661 * 240.00163 * 2 1 3 27 27 H 1.08998 * 109.47060 * 120.00861 * 2 1 3 28 28 H 1.09001 * 109.47222 * 29.99804 * 8 7 3 29 29 H 1.09003 * 109.47180 * 150.00041 * 8 7 3 30 30 H 0.96993 * 120.00077 * 179.97438 * 12 11 9 31 31 H 1.08001 * 120.03702 * 0.02562 * 18 17 7 32 32 H 1.07996 * 119.96431 * 180.02562 * 19 18 17 33 33 H 1.07999 * 119.92983 * 180.02562 * 20 19 18 34 34 H 1.08006 * 119.96218 * 179.70253 * 21 20 19 35 35 H 1.07997 * 120.03641 * 180.28129 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5072 1.4441 0.1209 6 7 4.6393 1.4455 0.2142 7 7 1.6525 2.0975 -1.2518 8 6 2.0289 1.5029 -2.5367 9 6 3.3703 2.0399 -2.9650 10 1 3.8902 2.7532 -2.3425 11 6 3.9339 1.6208 -4.1515 12 7 3.3005 0.7527 -4.9097 13 14 5.5969 2.2859 -4.6820 14 1 6.6724 1.4113 -4.1497 15 1 5.6691 2.3128 -6.1649 16 1 5.7710 3.6625 -4.1530 17 6 0.9241 3.2888 -1.2202 18 6 0.4630 3.7909 -0.0098 19 6 -0.2573 4.9688 0.0178 20 6 -0.5193 5.6487 -1.1576 21 6 -0.0664 5.1489 -2.3648 22 6 0.6595 3.9744 -2.3990 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5140 0.8899 28 1 2.0878 0.4195 -2.4324 29 1 1.2799 1.7555 -3.2873 30 1 3.6968 0.4581 -5.7446 31 1 0.6677 3.2607 0.9085 32 1 -0.6157 5.3600 0.9584 33 1 -1.0825 6.5699 -1.1332 34 1 -0.2768 5.6798 -3.2815 35 1 1.0168 3.5870 -3.3417 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044427813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:51 Heat of formation + Delta-G solvation = 58.309818 kcal Electronic energy + Delta-G solvation = -17472.618153 eV Core-core repulsion = 14856.778266 eV Total energy + Delta-G solvation = -2615.839887 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -39.29080 -37.11863 -35.06140 -33.27706 -32.28561 -30.43635 -29.08587 -27.90846 -25.70425 -23.26709 -21.91793 -21.35997 -20.10542 -17.41189 -17.23014 -16.47855 -15.29012 -15.04993 -14.35696 -14.26636 -13.59786 -13.55637 -13.00493 -12.92988 -12.74423 -12.62577 -12.13816 -12.09065 -11.77058 -11.38144 -11.27623 -11.08007 -10.96939 -10.82665 -10.72062 -10.40687 -10.31451 -10.02737 -9.77200 -9.01541 -8.51798 -8.36891 -6.69387 -6.09512 -4.18758 1.99227 2.17329 3.14518 3.27474 3.33626 3.36866 3.39550 4.15482 4.37304 4.39931 4.58533 5.08431 5.19951 5.21793 5.41472 5.47542 5.52281 5.68377 5.78598 5.91986 5.98145 6.10583 6.20777 6.25379 6.40345 6.49153 6.55599 6.84572 6.98835 7.08398 7.17876 7.28539 7.50330 7.78207 8.03891 8.12641 8.17081 8.30714 8.88685 9.48565 10.92866 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.009412 C = 0.007456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.956331 B = 2974.280135 C = 3754.566878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.249 3.751 4 H 0.117 0.883 5 C 0.207 3.793 6 N -0.431 5.431 7 N -0.603 5.603 8 C 0.248 3.752 9 C -0.530 4.530 10 H 0.058 0.942 11 C 0.066 3.934 12 N -0.893 5.893 13 Si 0.890 3.110 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.235 3.765 18 C -0.218 4.218 19 C -0.079 4.079 20 C -0.196 4.196 21 C -0.079 4.079 22 C -0.176 4.176 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 2.444 8.704 12.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.140 3.860 4 H 0.134 0.866 5 C -0.113 4.113 6 N -0.108 5.108 7 N -0.311 5.311 8 C 0.129 3.871 9 C -0.568 4.568 10 H 0.076 0.924 11 C -0.137 4.137 12 N -0.532 5.532 13 Si 0.718 3.282 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.132 3.868 18 C -0.240 4.240 19 C -0.098 4.098 20 C -0.217 4.217 21 C -0.097 4.097 22 C -0.199 4.199 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.513 2.157 8.632 11.645 hybrid contribution 0.746 0.376 -0.560 1.006 sum -6.767 2.533 8.072 10.833 Atomic orbital electron populations 1.21666 0.94363 1.01585 1.02451 1.21879 0.97154 0.94327 1.03725 1.18314 0.81455 0.95855 0.90358 0.86579 1.29678 0.95617 0.93198 0.92849 1.81026 1.12929 1.08172 1.08633 1.47080 1.56043 1.22337 1.05619 1.19363 0.95583 0.93904 0.78247 1.21518 1.03888 1.25981 1.05458 0.92409 1.24881 0.97575 0.94902 0.96308 1.69909 1.38444 1.31598 1.13267 0.86598 0.84355 0.79654 0.77568 1.20653 1.21055 1.19839 1.17875 0.89573 0.85759 0.93635 1.20608 1.07258 0.99972 0.96183 1.20682 0.97272 0.94403 0.97450 1.20726 1.06499 1.01525 0.92926 1.20873 0.96321 0.95225 0.97331 1.20971 1.03844 0.96767 0.98273 0.92626 0.92901 0.91647 0.89724 0.90928 0.94509 0.94136 0.92667 0.86741 0.87192 0.87505 0.86941 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.80 37.16 0.36 -1.35 16 2 C -0.13 -1.81 5.24 -26.73 -0.14 -1.95 16 3 C 0.25 3.99 2.43 -70.71 -0.17 3.82 16 4 H 0.12 1.52 5.31 -51.93 -0.28 1.24 16 5 C 0.21 4.03 13.58 -20.76 -0.28 3.74 16 6 N -0.43 -9.48 18.54 42.15 0.78 -8.70 16 7 N -0.60 -11.41 1.95 -168.75 -0.33 -11.74 16 8 C 0.25 5.72 4.46 -5.20 -0.02 5.70 16 9 C -0.53 -14.08 8.43 -34.44 -0.29 -14.37 16 10 H 0.06 1.63 7.61 -52.48 -0.40 1.23 16 11 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 12 N -0.89 -25.14 13.29 55.43 0.74 -24.41 16 13 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.24 4.27 6.54 -83.79 -0.55 3.72 16 18 C -0.22 -3.34 9.31 -39.38 -0.37 -3.70 16 19 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 20 C -0.20 -2.86 10.04 -39.54 -0.40 -3.25 16 21 C -0.08 -1.26 10.04 -39.61 -0.40 -1.66 16 22 C -0.18 -3.30 9.16 -39.38 -0.36 -3.67 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 26 H 0.08 1.37 6.31 -51.93 -0.33 1.05 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.89 6.10 -51.93 -0.32 0.57 16 29 H 0.04 0.99 6.46 -51.93 -0.34 0.65 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.11 1.49 5.74 -52.49 -0.30 1.19 16 32 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.14 2.83 6.26 -52.49 -0.33 2.50 16 LS Contribution 297.62 15.07 4.49 4.49 Total: -1.00 -29.57 297.62 -6.82 -36.38 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.36 Total: -0.28 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -3.11 Total: -12.78 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 1.19 Total: -44.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.57 -6.82 -36.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044427813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.693 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds