Wall clock time and date at job start Mon Mar 30 2020 06:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47450 * 2 1 4 4 H 1.08999 * 109.47117 * 54.99822 * 3 2 1 5 5 C 1.47202 * 109.47084 * 175.00072 * 3 2 1 6 6 N 3.43548 * 154.82781 * 8.43086 * 2 1 3 7 7 N 1.46507 * 109.47034 * 295.00269 * 3 2 1 8 8 C 1.46497 * 119.99967 * 304.59792 * 7 3 2 9 9 C 1.50697 * 109.47090 * 270.00073 * 8 7 3 10 10 H 1.08007 * 120.00156 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00291 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99665 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00222 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46955 * 90.00136 * 13 11 9 15 15 H 1.48498 * 109.46965 * 210.00118 * 13 11 9 16 16 H 1.48500 * 109.47101 * 329.99776 * 13 11 9 17 17 C 1.39672 * 119.99939 * 124.59943 * 7 3 2 18 18 C 1.38917 * 120.07422 * 354.21767 * 17 7 3 19 19 C 1.38097 * 119.92509 * 180.02562 * 18 17 7 20 20 C 1.38288 * 120.07685 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.14674 * 0.28256 * 20 19 18 22 22 C 1.38110 * 120.07542 * 359.44292 * 21 20 19 23 23 H 1.09002 * 109.47298 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46661 * 299.99837 * 1 2 3 25 25 H 1.09001 * 109.46688 * 59.99803 * 1 2 3 26 26 H 1.09002 * 109.46661 * 240.00163 * 2 1 3 27 27 H 1.08998 * 109.47060 * 120.00861 * 2 1 3 28 28 H 1.09001 * 109.47222 * 29.99804 * 8 7 3 29 29 H 1.09003 * 109.47180 * 150.00041 * 8 7 3 30 30 H 0.96993 * 120.00077 * 179.97438 * 12 11 9 31 31 H 1.08001 * 120.03702 * 0.02562 * 18 17 7 32 32 H 1.07996 * 119.96431 * 180.02562 * 19 18 17 33 33 H 1.07999 * 119.92983 * 180.02562 * 20 19 18 34 34 H 1.08006 * 119.96218 * 179.70253 * 21 20 19 35 35 H 1.07997 * 120.03641 * 180.28129 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5072 1.4441 0.1209 6 7 4.6393 1.4455 0.2142 7 7 1.6525 2.0975 -1.2518 8 6 2.0289 1.5029 -2.5367 9 6 3.3703 2.0399 -2.9650 10 1 3.8902 2.7532 -2.3425 11 6 3.9339 1.6208 -4.1515 12 7 3.3005 0.7527 -4.9097 13 14 5.5969 2.2859 -4.6820 14 1 6.6724 1.4113 -4.1497 15 1 5.6691 2.3128 -6.1649 16 1 5.7710 3.6625 -4.1530 17 6 0.9241 3.2888 -1.2202 18 6 0.4630 3.7909 -0.0098 19 6 -0.2573 4.9688 0.0178 20 6 -0.5193 5.6487 -1.1576 21 6 -0.0664 5.1489 -2.3648 22 6 0.6595 3.9744 -2.3990 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5140 0.8899 28 1 2.0878 0.4195 -2.4324 29 1 1.2799 1.7555 -3.2873 30 1 3.6968 0.4581 -5.7446 31 1 0.6677 3.2607 0.9085 32 1 -0.6157 5.3600 0.9584 33 1 -1.0825 6.5699 -1.1332 34 1 -0.2768 5.6798 -3.2815 35 1 1.0168 3.5870 -3.3417 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044427813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:49 Heat of formation + Delta-G solvation = 42.896795 kcal Electronic energy + Delta-G solvation = -17473.286512 eV Core-core repulsion = 14856.778266 eV Total energy + Delta-G solvation = -2616.508245 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62865 -38.46164 -36.63717 -35.08809 -33.74456 -31.72254 -30.52640 -29.38287 -27.26538 -24.95405 -23.18388 -22.57268 -21.52464 -18.74676 -18.69790 -18.49296 -16.83112 -16.51479 -15.91805 -15.59797 -14.99237 -14.82421 -14.53314 -14.33494 -14.21901 -14.02443 -13.75440 -13.59857 -13.20853 -13.08381 -12.84072 -12.65685 -12.45824 -12.28047 -12.07118 -11.95881 -11.73973 -11.71527 -11.24648 -10.64287 -10.57372 -9.61108 -8.40410 -7.92736 -6.34977 0.75254 0.91215 1.25992 1.28787 1.37538 1.64293 1.85524 2.30215 2.73081 3.02473 3.06143 3.27899 3.88251 4.03374 4.24751 4.34687 4.45965 4.58564 4.67158 4.80448 4.83727 4.92337 4.97132 5.16042 5.19457 5.23513 5.37536 5.38953 5.54493 5.61825 5.71052 5.81690 5.94523 6.07126 6.24078 6.45400 6.64688 6.81181 6.89735 7.34812 8.80001 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.009412 C = 0.007456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.956331 B = 2974.280135 C = 3754.566878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.246 3.754 4 H 0.158 0.842 5 C 0.221 3.779 6 N -0.483 5.483 7 N -0.609 5.609 8 C 0.270 3.730 9 C -0.528 4.528 10 H 0.037 0.963 11 C 0.021 3.979 12 N -0.917 5.917 13 Si 0.937 3.063 14 H -0.284 1.284 15 H -0.272 1.272 16 H -0.278 1.278 17 C 0.211 3.789 18 C -0.211 4.211 19 C -0.073 4.073 20 C -0.190 4.190 21 C -0.086 4.086 22 C -0.209 4.209 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.101 0.899 28 H 0.024 0.976 29 H 0.019 0.981 30 H 0.266 0.734 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.914 3.617 11.079 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.138 3.862 4 H 0.175 0.825 5 C -0.099 4.099 6 N -0.161 5.161 7 N -0.318 5.318 8 C 0.148 3.852 9 C -0.567 4.567 10 H 0.055 0.945 11 C -0.178 4.178 12 N -0.558 5.558 13 Si 0.764 3.236 14 H -0.211 1.211 15 H -0.197 1.197 16 H -0.203 1.203 17 C 0.109 3.891 18 C -0.233 4.233 19 C -0.092 4.092 20 C -0.210 4.210 21 C -0.105 4.105 22 C -0.232 4.232 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.119 0.881 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.156 0.844 34 H 0.143 0.857 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.108 3.355 11.017 14.683 hybrid contribution 1.145 0.115 -1.258 1.704 sum -7.963 3.470 9.759 13.065 Atomic orbital electron populations 1.21619 0.92538 1.02619 1.02525 1.21879 0.98581 0.92585 1.03500 1.18886 0.79439 0.97629 0.90230 0.82549 1.30508 0.96434 0.91589 0.91320 1.81021 1.14635 1.10050 1.10350 1.46804 1.56902 1.23146 1.04945 1.18774 0.93245 0.92977 0.80166 1.21689 1.05067 1.24976 1.04987 0.94475 1.25491 1.00147 0.95459 0.96739 1.69974 1.39532 1.32604 1.13656 0.85877 0.81276 0.78627 0.77852 1.21050 1.19702 1.20300 1.18124 0.90607 0.85691 0.94710 1.20932 1.06216 1.00361 0.95758 1.21178 0.95690 0.93370 0.98946 1.21136 1.05374 1.02271 0.92211 1.21082 0.95931 0.94367 0.99095 1.20871 1.06249 0.98695 0.97349 0.91204 0.90122 0.94128 0.92988 0.88054 0.95822 0.96268 0.92520 0.83891 0.83182 0.84415 0.85734 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.80 71.98 0.71 -2.21 16 2 C -0.13 -3.29 5.24 30.59 0.16 -3.13 16 3 C 0.25 7.53 2.43 43.18 0.11 7.64 16 4 H 0.16 3.48 5.31 -2.39 -0.01 3.47 16 5 C 0.22 8.53 13.58 89.44 1.21 9.74 16 6 N -0.48 -21.46 18.54 20.01 0.37 -21.08 16 7 N -0.61 -23.17 1.95 -687.79 -1.34 -24.51 16 8 C 0.27 13.02 4.46 85.63 0.38 13.40 16 9 C -0.53 -29.19 8.43 25.60 0.22 -28.97 16 10 H 0.04 2.17 7.61 -2.91 -0.02 2.15 16 11 C 0.02 1.21 5.46 84.66 0.46 1.67 16 12 N -0.92 -53.28 13.29 21.45 0.28 -53.00 16 13 Si 0.94 46.31 29.54 68.60 2.03 48.34 16 14 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 15 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 17 C 0.21 7.50 6.54 38.22 0.25 7.75 16 18 C -0.21 -5.72 9.31 22.40 0.21 -5.51 16 19 C -0.07 -1.73 10.04 22.25 0.22 -1.51 16 20 C -0.19 -4.83 10.04 22.29 0.22 -4.61 16 21 C -0.09 -2.68 10.04 22.25 0.22 -2.46 16 22 C -0.21 -8.03 9.16 22.40 0.21 -7.83 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.04 1.08 7.75 -2.39 -0.02 1.06 16 26 H 0.05 1.71 6.31 -2.39 -0.02 1.69 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16 28 H 0.02 1.21 6.10 -2.39 -0.01 1.19 16 29 H 0.02 1.01 6.46 -2.39 -0.02 0.99 16 30 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.14 2.97 5.74 -2.91 -0.02 2.96 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 33 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.12 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.10 4.38 6.26 -2.91 -0.02 4.36 16 Total: -1.00 -67.07 297.62 7.01 -60.06 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.09 Total: 6.22 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 4.58 Total: -16.02 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -0.69 Total: -98.59 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -67.07 7.01 -60.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044427813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.958 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds