Wall clock time and date at job start Mon Mar 30 2020 06:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46983 * 2 1 4 4 C 1.52991 * 109.47392 * 120.00312 * 2 1 3 5 5 C 1.47204 * 109.47399 * 184.99703 * 4 2 1 6 6 N 3.43546 * 154.82855 * 111.57129 * 2 1 3 7 7 N 1.46498 * 109.46757 * 240.00793 * 2 1 3 8 8 C 1.46503 * 120.00037 * 295.39258 * 7 2 1 9 9 C 1.50701 * 109.46966 * 90.00328 * 8 7 2 10 10 H 1.08004 * 119.99683 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00156 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99940 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00170 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47270 * 59.99606 * 13 11 9 15 15 H 1.48505 * 109.47138 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46995 * 299.99611 * 13 11 9 17 17 C 1.39675 * 120.00228 * 115.40058 * 7 2 1 18 18 C 1.38911 * 120.07510 * 185.50597 * 17 7 2 19 19 C 1.38105 * 119.92266 * 179.76514 * 18 17 7 20 20 C 1.38276 * 120.07560 * 0.50852 * 19 18 17 21 21 C 1.38292 * 120.15237 * 359.73947 * 20 19 18 22 22 C 1.38098 * 120.07230 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.46782 * 299.99298 * 1 2 3 24 24 H 1.08995 * 109.47424 * 59.99136 * 1 2 3 25 25 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47392 * 65.00214 * 4 2 1 27 27 H 1.09001 * 109.47323 * 305.00204 * 4 2 1 28 28 H 1.08994 * 109.47248 * 210.00699 * 8 7 2 29 29 H 1.09004 * 109.47089 * 330.00458 * 8 7 2 30 30 H 0.96993 * 120.00199 * 180.02562 * 12 11 9 31 31 H 1.08000 * 120.03594 * 359.97438 * 18 17 7 32 32 H 1.08007 * 119.95969 * 180.25042 * 19 18 17 33 33 H 1.08004 * 119.92759 * 179.72317 * 20 19 18 34 34 H 1.07999 * 119.96472 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.03808 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5071 -0.6175 1.3111 6 7 4.6392 -0.5372 1.3589 7 7 2.0182 -0.6904 -1.1963 8 6 1.7494 -2.1190 -1.3785 9 6 0.4471 -2.2950 -2.1162 10 1 -0.1235 -1.4292 -2.4185 11 6 -0.0166 -3.5611 -2.4041 12 7 0.6780 -4.6153 -2.0354 13 14 -1.6305 -3.7792 -3.3190 14 1 -1.5400 -3.1198 -4.6464 15 1 -1.9037 -5.2273 -3.5026 16 1 -2.7311 -3.1639 -2.5347 17 6 2.7402 0.0132 -2.1630 18 6 3.1051 -0.6099 -3.3497 19 6 3.8147 0.0903 -4.3055 20 6 4.1711 1.4068 -4.0778 21 6 3.8138 2.0286 -2.8954 22 6 3.1000 1.3358 -1.9374 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 1.7517 -1.7716 1.2054 27 1 1.6054 -0.2619 2.1369 28 1 2.5572 -2.5701 -1.9547 29 1 1.6835 -2.6035 -0.4043 30 1 0.3521 -5.5061 -2.2383 31 1 2.8313 -1.6396 -3.5261 32 1 4.0953 -0.3924 -5.2301 33 1 4.7299 1.9507 -4.8251 34 1 4.0941 3.0568 -2.7206 35 1 2.8217 1.8218 -1.0140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:48 Heat of formation + Delta-G solvation = 55.410994 kcal Electronic energy + Delta-G solvation = -17449.652449 eV Core-core repulsion = 14833.686860 eV Total energy + Delta-G solvation = -2615.965589 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -39.16215 -37.08934 -35.60703 -33.04475 -31.97041 -30.30617 -28.77057 -27.81999 -26.46774 -23.30647 -22.13137 -21.03827 -19.37875 -17.45277 -17.07250 -16.45353 -15.30877 -15.00377 -14.34289 -14.25079 -13.87900 -13.59794 -13.02153 -12.88290 -12.74167 -12.60526 -12.13287 -11.97766 -11.82430 -11.34590 -11.31410 -11.20347 -11.03462 -10.80166 -10.69827 -10.36600 -10.28032 -9.95550 -9.62511 -8.94558 -8.52847 -8.28338 -6.54361 -6.06248 -4.19241 2.08641 2.29621 3.11448 3.14929 3.25195 3.31015 3.33637 3.93997 4.33552 4.36688 4.56949 5.14398 5.18748 5.30063 5.49249 5.56828 5.60601 5.73868 5.83868 5.97428 6.06037 6.09752 6.30008 6.37119 6.42248 6.63494 6.85552 6.95213 7.08614 7.16509 7.23109 7.34002 7.59426 7.78959 7.92689 8.12066 8.22395 8.42284 8.89370 9.47204 10.92897 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.009141 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.282832 B = 3062.274422 C = 3937.091993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.084 0.916 4 C -0.047 4.047 5 C 0.217 3.783 6 N -0.448 5.448 7 N -0.610 5.610 8 C 0.250 3.750 9 C -0.526 4.526 10 H 0.062 0.938 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.239 3.761 18 C -0.183 4.183 19 C -0.078 4.078 20 C -0.202 4.202 21 C -0.079 4.079 22 C -0.220 4.220 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.112 0.888 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 8.972 2.984 9.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.102 0.898 4 C -0.088 4.088 5 C -0.100 4.100 6 N -0.125 5.125 7 N -0.317 5.317 8 C 0.130 3.870 9 C -0.565 4.565 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.202 1.202 17 C 0.134 3.866 18 C -0.205 4.205 19 C -0.097 4.097 20 C -0.222 4.222 21 C -0.098 4.098 22 C -0.243 4.243 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.138 0.862 27 H 0.130 0.870 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.619 8.739 3.219 9.452 hybrid contribution -1.398 -0.349 -0.629 1.572 sum 0.221 8.390 2.590 8.783 Atomic orbital electron populations 1.22173 0.93892 1.04519 1.01009 1.20799 0.94968 0.95757 0.83557 0.89840 1.19927 0.82070 1.05984 1.00812 1.29119 0.95300 0.92955 0.92650 1.81134 1.12976 1.09200 1.09201 1.47175 1.55696 1.10632 1.18200 1.19249 0.96387 0.74091 0.97234 1.21539 1.06057 0.92178 1.36761 0.91970 1.24952 0.97373 0.95882 0.95816 1.69916 1.38516 0.98245 1.46657 0.86638 0.83843 0.76932 0.80510 1.20238 1.21363 1.20211 1.17876 0.89275 0.90556 0.88880 1.20940 1.04269 1.01730 0.93588 1.20842 0.96698 0.94172 0.98020 1.20673 1.07024 0.95935 0.98594 1.20668 0.97065 0.98417 0.93647 1.20584 1.08050 0.94588 1.01041 0.92954 0.92117 0.89780 0.86236 0.87039 0.94939 0.94944 0.92622 0.84888 0.87106 0.87652 0.87452 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.60 37.16 0.32 -1.93 16 2 C 0.16 2.33 2.56 -67.94 -0.17 2.15 16 3 H 0.08 1.15 5.31 -51.93 -0.28 0.88 16 4 C -0.05 -0.61 5.07 -29.52 -0.15 -0.76 16 5 C 0.22 3.51 15.14 -20.76 -0.31 3.19 16 6 N -0.45 -8.39 18.54 42.15 0.78 -7.61 16 7 N -0.61 -11.65 2.22 -165.55 -0.37 -12.02 16 8 C 0.25 5.66 4.35 -5.19 -0.02 5.64 16 9 C -0.53 -12.98 7.80 -34.44 -0.27 -13.25 16 10 H 0.06 1.56 7.59 -52.48 -0.40 1.16 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16 13 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 C 0.24 4.69 6.54 -83.78 -0.55 4.14 16 18 C -0.18 -3.70 9.16 -39.38 -0.36 -4.06 16 19 C -0.08 -1.39 10.04 -39.62 -0.40 -1.79 16 20 C -0.20 -3.30 10.04 -39.55 -0.40 -3.69 16 21 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 22 C -0.22 -3.83 9.31 -39.38 -0.37 -4.20 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.08 1.40 6.93 -51.93 -0.36 1.04 16 26 H 0.12 1.67 6.31 -51.93 -0.33 1.34 16 27 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.83 6.44 -51.93 -0.33 0.49 16 29 H 0.03 0.75 6.10 -51.93 -0.32 0.43 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.13 2.95 6.26 -52.49 -0.33 2.63 16 32 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.11 1.74 5.74 -52.49 -0.30 1.44 16 LS Contribution 296.60 15.07 4.47 4.47 Total: -1.00 -28.66 296.60 -6.89 -35.55 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.31 Total: 2.71 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -3.17 Total: -14.74 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 1.15 Total: -43.23 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.66 -6.89 -35.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.962 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds