Wall clock time and date at job start Mon Mar 30 2020 06:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46983 * 2 1 4 4 C 1.52991 * 109.47392 * 120.00312 * 2 1 3 5 5 C 1.47204 * 109.47399 * 184.99703 * 4 2 1 6 6 N 3.43546 * 154.82855 * 111.57129 * 2 1 3 7 7 N 1.46498 * 109.46757 * 240.00793 * 2 1 3 8 8 C 1.46503 * 120.00037 * 295.39258 * 7 2 1 9 9 C 1.50701 * 109.46966 * 90.00328 * 8 7 2 10 10 H 1.08004 * 119.99683 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00156 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99940 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00170 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47270 * 59.99606 * 13 11 9 15 15 H 1.48505 * 109.47138 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46995 * 299.99611 * 13 11 9 17 17 C 1.39675 * 120.00228 * 115.40058 * 7 2 1 18 18 C 1.38911 * 120.07510 * 185.50597 * 17 7 2 19 19 C 1.38105 * 119.92266 * 179.76514 * 18 17 7 20 20 C 1.38276 * 120.07560 * 0.50852 * 19 18 17 21 21 C 1.38292 * 120.15237 * 359.73947 * 20 19 18 22 22 C 1.38098 * 120.07230 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.46782 * 299.99298 * 1 2 3 24 24 H 1.08995 * 109.47424 * 59.99136 * 1 2 3 25 25 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47392 * 65.00214 * 4 2 1 27 27 H 1.09001 * 109.47323 * 305.00204 * 4 2 1 28 28 H 1.08994 * 109.47248 * 210.00699 * 8 7 2 29 29 H 1.09004 * 109.47089 * 330.00458 * 8 7 2 30 30 H 0.96993 * 120.00199 * 180.02562 * 12 11 9 31 31 H 1.08000 * 120.03594 * 359.97438 * 18 17 7 32 32 H 1.08007 * 119.95969 * 180.25042 * 19 18 17 33 33 H 1.08004 * 119.92759 * 179.72317 * 20 19 18 34 34 H 1.07999 * 119.96472 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.03808 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5071 -0.6175 1.3111 6 7 4.6392 -0.5372 1.3589 7 7 2.0182 -0.6904 -1.1963 8 6 1.7494 -2.1190 -1.3785 9 6 0.4471 -2.2950 -2.1162 10 1 -0.1235 -1.4292 -2.4185 11 6 -0.0166 -3.5611 -2.4041 12 7 0.6780 -4.6153 -2.0354 13 14 -1.6305 -3.7792 -3.3190 14 1 -1.5400 -3.1198 -4.6464 15 1 -1.9037 -5.2273 -3.5026 16 1 -2.7311 -3.1639 -2.5347 17 6 2.7402 0.0132 -2.1630 18 6 3.1051 -0.6099 -3.3497 19 6 3.8147 0.0903 -4.3055 20 6 4.1711 1.4068 -4.0778 21 6 3.8138 2.0286 -2.8954 22 6 3.1000 1.3358 -1.9374 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 1.7517 -1.7716 1.2054 27 1 1.6054 -0.2619 2.1369 28 1 2.5572 -2.5701 -1.9547 29 1 1.6835 -2.6035 -0.4043 30 1 0.3521 -5.5061 -2.2383 31 1 2.8313 -1.6396 -3.5261 32 1 4.0953 -0.3924 -5.2301 33 1 4.7299 1.9507 -4.8251 34 1 4.0941 3.0568 -2.7206 35 1 2.8217 1.8218 -1.0140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:44 Heat of formation + Delta-G solvation = 40.817212 kcal Electronic energy + Delta-G solvation = -17450.285283 eV Core-core repulsion = 14833.686860 eV Total energy + Delta-G solvation = -2616.598423 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.55211 -38.40307 -37.00735 -34.87820 -33.38420 -31.71370 -30.37226 -28.98444 -28.09888 -25.01935 -23.52292 -22.44166 -20.75191 -18.83711 -18.51614 -18.20758 -16.75574 -16.57310 -15.89395 -15.60371 -15.22771 -14.92205 -14.43961 -14.37978 -14.28564 -13.99218 -13.70403 -13.25083 -13.15533 -13.07436 -12.71462 -12.61090 -12.55490 -12.34888 -12.10562 -11.98542 -11.74963 -11.58728 -11.13358 -10.53511 -10.48875 -9.67713 -8.28055 -7.78682 -6.23099 0.69355 0.91567 1.42846 1.44916 1.51453 1.83484 1.89111 2.39412 2.59603 3.14689 3.17574 3.19201 3.93338 4.10304 4.24123 4.32678 4.50510 4.53569 4.67626 4.75352 4.84450 4.89479 4.92125 5.11069 5.18311 5.19674 5.34128 5.40552 5.65285 5.68411 5.77078 5.79198 5.88685 6.19507 6.22801 6.59755 6.67636 6.94380 6.98197 7.47119 8.93328 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.009141 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.282832 B = 3062.274422 C = 3937.091993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.150 3.850 3 H 0.104 0.896 4 C -0.041 4.041 5 C 0.236 3.764 6 N -0.498 5.498 7 N -0.617 5.617 8 C 0.269 3.731 9 C -0.518 4.518 10 H 0.056 0.944 11 C 0.014 3.986 12 N -0.929 5.929 13 Si 0.950 3.050 14 H -0.280 1.280 15 H -0.289 1.289 16 H -0.264 1.264 17 C 0.217 3.783 18 C -0.219 4.219 19 C -0.085 4.085 20 C -0.199 4.199 21 C -0.077 4.077 22 C -0.221 4.221 23 H 0.097 0.903 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.109 0.891 27 H 0.167 0.833 28 H -0.006 1.006 29 H 0.027 0.973 30 H 0.263 0.737 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 11.574 3.622 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.045 3.955 3 H 0.121 0.879 4 C -0.082 4.082 5 C -0.080 4.080 6 N -0.176 5.176 7 N -0.325 5.325 8 C 0.148 3.852 9 C -0.557 4.557 10 H 0.075 0.925 11 C -0.185 4.185 12 N -0.570 5.570 13 Si 0.776 3.224 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.189 1.189 17 C 0.112 3.888 18 C -0.242 4.242 19 C -0.104 4.104 20 C -0.219 4.219 21 C -0.095 4.095 22 C -0.244 4.244 23 H 0.116 0.884 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.127 0.873 27 H 0.185 0.815 28 H 0.012 0.988 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.866 11.372 3.864 12.042 hybrid contribution -1.115 -1.079 -0.869 1.778 sum -0.249 10.294 2.996 10.724 Atomic orbital electron populations 1.22084 0.93095 1.03093 1.02453 1.21117 0.95520 0.96454 0.82416 0.87875 1.20129 0.80168 1.05716 1.02166 1.29668 0.95805 0.91479 0.91097 1.81146 1.14576 1.10899 1.11023 1.47101 1.56334 1.09300 1.19743 1.18721 0.94116 0.76547 0.95815 1.21720 1.06347 0.91766 1.35896 0.92532 1.25652 1.00252 0.95814 0.96778 1.70030 1.40095 0.98509 1.48320 0.85732 0.80820 0.76654 0.79187 1.20625 1.21425 1.18877 1.18142 0.90060 0.91743 0.88839 1.20866 1.06994 1.00686 0.95607 1.21081 0.96147 0.95122 0.98011 1.21061 1.06275 0.95159 0.99454 1.21146 0.95543 0.99942 0.92867 1.20863 1.07757 0.93490 1.02275 0.88418 0.93713 0.92554 0.87263 0.81544 0.98847 0.95519 0.92835 0.88531 0.85706 0.84511 0.83822 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 8.60 71.98 0.62 -3.29 16 2 C 0.15 4.18 2.56 44.99 0.12 4.29 16 3 H 0.10 2.49 5.31 -2.39 -0.01 2.48 16 4 C -0.04 -0.98 5.07 28.79 0.15 -0.84 16 5 C 0.24 7.31 15.14 89.44 1.35 8.67 16 6 N -0.50 -18.43 18.54 20.01 0.37 -18.06 16 7 N -0.62 -23.74 2.22 -677.67 -1.50 -25.24 16 8 C 0.27 12.74 4.35 85.63 0.37 13.11 16 9 C -0.52 -26.33 7.80 25.60 0.20 -26.13 16 10 H 0.06 2.89 7.59 -2.91 -0.02 2.87 16 11 C 0.01 0.73 5.46 84.65 0.46 1.19 16 12 N -0.93 -52.27 13.29 21.45 0.28 -51.99 16 13 Si 0.95 42.15 29.54 68.60 2.03 44.17 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 15 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 17 C 0.22 8.53 6.54 38.22 0.25 8.77 16 18 C -0.22 -9.21 9.16 22.40 0.21 -9.01 16 19 C -0.08 -2.99 10.04 22.25 0.22 -2.77 16 20 C -0.20 -6.00 10.04 22.29 0.22 -5.78 16 21 C -0.08 -2.23 10.04 22.25 0.22 -2.00 16 22 C -0.22 -7.24 9.31 22.40 0.21 -7.03 16 23 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 1.81 6.93 -2.39 -0.02 1.79 16 26 H 0.11 2.94 6.31 -2.39 -0.02 2.93 16 27 H 0.17 2.15 8.14 -2.39 -0.02 2.13 16 28 H -0.01 -0.35 6.44 -2.39 -0.02 -0.37 16 29 H 0.03 1.29 6.10 -2.38 -0.01 1.28 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.10 4.68 6.26 -2.91 -0.02 4.66 16 32 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 35 H 0.13 3.68 5.74 -2.91 -0.02 3.67 16 Total: -1.00 -65.08 296.60 6.87 -58.21 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.09 Total: 13.73 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 4.60 Total: -20.82 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -0.85 Total: -95.30 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -65.08 6.87 -58.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.025 kcal (2) G-P(sol) polarization free energy of solvation -65.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds