Wall clock time and date at job start Mon Mar 30 2020 07:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.46857 * 2 1 4 4 C 1.46898 * 111.00032 * 193.95378 * 3 2 1 5 5 C 1.50702 * 109.47446 * 66.04285 * 4 3 2 6 6 H 1.08002 * 119.99304 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00271 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00166 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47146 * 59.99909 * 9 7 5 11 11 H 1.48502 * 109.46926 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46813 * 299.99948 * 9 7 5 13 13 C 1.39032 * 111.00298 * 69.99675 * 3 2 1 14 14 C 1.38878 * 120.17125 * 63.97875 * 13 3 2 15 15 C 1.38020 * 120.07030 * 179.97438 * 14 13 3 16 16 C 1.50700 * 119.78740 * 179.97438 * 15 14 13 17 17 C 1.38570 * 120.42334 * 359.74313 * 15 14 13 18 18 C 1.37794 * 120.34178 * 0.51425 * 17 15 14 19 19 C 1.39735 * 119.92103 * 359.48573 * 18 17 15 20 20 C 1.43199 * 120.20930 * 180.27399 * 19 18 17 21 21 N 4.44245 * 66.69233 * 348.06827 * 2 1 3 22 22 H 1.09008 * 109.46622 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47442 * 300.00003 * 1 2 3 24 24 H 1.08997 * 109.47109 * 60.00480 * 1 2 3 25 25 H 1.08999 * 109.47442 * 239.99997 * 2 1 3 26 26 H 1.09006 * 109.47048 * 119.99223 * 2 1 3 27 27 H 1.09003 * 109.47481 * 186.04327 * 4 3 2 28 28 H 1.08998 * 109.46960 * 306.04033 * 4 3 2 29 29 H 0.96997 * 119.99981 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.96370 * 359.95207 * 14 13 3 31 31 H 1.09006 * 109.47220 * 89.99847 * 16 15 14 32 32 H 1.08998 * 109.46942 * 209.99714 * 16 15 14 33 33 H 1.09003 * 109.47388 * 330.00482 * 16 15 14 34 34 H 1.08000 * 119.82956 * 180.27781 * 17 15 14 35 35 H 1.08002 * 120.04168 * 179.77153 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4499 1.4378 -0.3307 5 6 3.6536 0.9855 -1.7537 6 1 2.8052 0.6889 -2.3527 7 6 4.9229 0.9503 -2.2910 8 7 5.9560 1.3109 -1.5615 9 14 5.1751 0.3903 -4.0552 10 1 4.4227 1.2849 -4.9709 11 1 6.6212 0.4423 -4.3890 12 1 4.6822 -1.0022 -4.2078 13 6 1.7671 2.0028 1.2196 14 6 2.3714 1.5330 2.3784 15 6 2.1197 2.1482 3.5880 16 6 2.7784 1.6327 4.8415 17 6 1.2688 3.2397 3.6564 18 6 0.6559 3.7169 2.5183 19 6 0.9006 3.1050 1.2861 20 6 0.2715 3.5995 0.0985 21 7 -0.2277 3.9918 -0.8435 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8901 27 1 3.8112 2.4601 -0.2192 28 1 4.0027 0.7817 0.3417 29 1 6.8490 1.2857 -1.9394 30 1 3.0388 0.6851 2.3330 31 1 3.7313 2.1417 4.9869 32 1 2.1305 1.8232 5.6971 33 1 2.9501 0.5604 4.7472 34 1 1.0821 3.7166 4.6073 35 1 -0.0093 4.5657 2.5777 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051578496.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:11 Heat of formation + Delta-G solvation = 51.523485 kcal Electronic energy + Delta-G solvation = -17207.613204 eV Core-core repulsion = 14591.479040 eV Total energy + Delta-G solvation = -2616.134164 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.85554 -36.63265 -35.93056 -32.82382 -32.45558 -30.72646 -29.27880 -27.40430 -26.25825 -22.99006 -22.51916 -22.01848 -19.86694 -18.47117 -16.48286 -15.60018 -15.40534 -15.02585 -14.36448 -14.19938 -13.94633 -13.58656 -13.17673 -13.05697 -12.73066 -12.54747 -12.42486 -12.22257 -11.88844 -11.61797 -11.45109 -11.24687 -11.13684 -10.98352 -10.76094 -10.58675 -10.35445 -10.04328 -9.36464 -8.60460 -8.50876 -8.27765 -7.59084 -6.09188 -4.11142 1.06562 1.52815 3.28090 3.31219 3.33135 3.35303 3.39202 4.19701 4.34624 4.41184 4.59602 4.91242 5.02693 5.26654 5.31359 5.43125 5.62798 5.63289 5.64486 5.76947 5.86656 5.91451 6.08417 6.12006 6.25713 6.36418 6.50978 6.63039 6.69123 6.72671 6.93477 7.17836 7.22614 7.74384 7.92812 8.04114 8.09831 8.47187 8.94855 9.53191 11.01383 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.007213 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.298584 B = 3881.060126 C = 4365.835284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 N -0.517 5.517 4 C 0.202 3.798 5 C -0.512 4.512 6 H 0.065 0.935 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.175 3.825 14 C -0.154 4.154 15 C -0.052 4.052 16 C -0.117 4.117 17 C -0.141 4.141 18 C -0.067 4.067 19 C -0.031 4.031 20 C 0.279 3.721 21 N -0.432 5.432 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.032 0.968 28 H 0.001 0.999 29 H 0.263 0.737 30 H 0.130 0.870 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 -0.237 13.078 15.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 N -0.239 5.239 4 C 0.079 3.921 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.077 3.923 14 C -0.174 4.174 15 C -0.053 4.053 16 C -0.174 4.174 17 C -0.159 4.159 18 C -0.088 4.088 19 C -0.036 4.036 20 C -0.036 4.036 21 N -0.108 5.108 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.018 0.982 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.358 0.625 11.200 13.989 hybrid contribution 1.038 -0.822 -0.067 1.326 sum -7.320 -0.197 11.133 13.325 Atomic orbital electron populations 1.21817 0.96325 1.00636 1.01764 1.22056 0.94275 0.88161 1.01790 1.59731 1.22908 1.16848 1.24453 1.19802 0.78291 0.97423 0.96552 1.21070 0.92777 1.44259 0.96974 0.91731 1.24957 0.95855 0.95414 0.98096 1.69939 0.98949 1.47938 1.36680 0.86540 0.76946 0.79236 0.84615 1.20119 1.21263 1.20177 1.19060 0.91132 0.91918 0.90152 1.21679 1.01551 1.02021 0.92185 1.19986 0.95580 0.94696 0.95073 1.20853 1.00538 1.01501 0.94477 1.20789 0.99301 0.97669 0.98143 1.20998 0.98522 0.98581 0.90661 1.16107 1.01011 0.98324 0.88146 1.25280 0.92887 0.92795 0.92653 1.81104 1.10505 1.09719 1.09423 0.92859 0.93568 0.92340 0.88878 0.95322 0.94954 0.98151 0.92738 0.85237 0.90790 0.91503 0.91399 0.85560 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.94 37.16 0.37 -2.00 16 2 C 0.06 1.19 5.44 -3.82 -0.02 1.17 16 3 N -0.52 -10.95 3.82 -172.22 -0.66 -11.61 16 4 C 0.20 5.11 4.30 -4.98 -0.02 5.09 16 5 C -0.51 -14.18 8.31 -34.44 -0.29 -14.47 16 6 H 0.06 1.79 7.23 -52.49 -0.38 1.41 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.18 3.18 3.73 -83.56 -0.31 2.87 16 14 C -0.15 -2.43 8.15 -39.42 -0.32 -2.75 16 15 C -0.05 -0.66 5.88 -104.58 -0.62 -1.27 16 16 C -0.12 -1.12 10.00 36.01 0.36 -0.76 16 17 C -0.14 -1.61 9.67 -39.62 -0.38 -1.99 16 18 C -0.07 -0.85 9.75 -39.18 -0.38 -1.24 16 19 C -0.03 -0.52 5.76 -106.61 -0.61 -1.14 16 20 C 0.28 5.26 14.81 -22.48 -0.33 4.93 16 21 N -0.43 -8.90 18.54 41.84 0.78 -8.12 16 22 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 23 H 0.05 0.71 7.52 -51.93 -0.39 0.32 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.09 1.91 6.60 -51.93 -0.34 1.57 16 26 H 0.03 0.50 7.06 -51.93 -0.37 0.13 16 27 H 0.03 0.90 8.06 -51.93 -0.42 0.48 16 28 H 0.00 0.02 7.46 -51.93 -0.39 -0.37 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.13 2.09 7.13 -52.49 -0.37 1.72 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 303.78 15.07 4.58 4.58 Total: -1.00 -30.55 303.78 -6.99 -37.55 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -4.75 Total: -3.59 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.66 Total: -10.03 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.85 Total: -45.12 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.55 -6.99 -37.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051578496.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.070 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds