Wall clock time and date at job start Mon Mar 30 2020 07:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.46857 * 2 1 4 4 C 1.46898 * 111.00032 * 193.95378 * 3 2 1 5 5 C 1.50702 * 109.47446 * 66.04285 * 4 3 2 6 6 H 1.08002 * 119.99304 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00271 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00166 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47146 * 59.99909 * 9 7 5 11 11 H 1.48502 * 109.46926 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46813 * 299.99948 * 9 7 5 13 13 C 1.39032 * 111.00298 * 69.99675 * 3 2 1 14 14 C 1.38878 * 120.17125 * 63.97875 * 13 3 2 15 15 C 1.38020 * 120.07030 * 179.97438 * 14 13 3 16 16 C 1.50700 * 119.78740 * 179.97438 * 15 14 13 17 17 C 1.38570 * 120.42334 * 359.74313 * 15 14 13 18 18 C 1.37794 * 120.34178 * 0.51425 * 17 15 14 19 19 C 1.39735 * 119.92103 * 359.48573 * 18 17 15 20 20 C 1.43199 * 120.20930 * 180.27399 * 19 18 17 21 21 N 4.44245 * 66.69233 * 348.06827 * 2 1 3 22 22 H 1.09008 * 109.46622 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47442 * 300.00003 * 1 2 3 24 24 H 1.08997 * 109.47109 * 60.00480 * 1 2 3 25 25 H 1.08999 * 109.47442 * 239.99997 * 2 1 3 26 26 H 1.09006 * 109.47048 * 119.99223 * 2 1 3 27 27 H 1.09003 * 109.47481 * 186.04327 * 4 3 2 28 28 H 1.08998 * 109.46960 * 306.04033 * 4 3 2 29 29 H 0.96997 * 119.99981 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.96370 * 359.95207 * 14 13 3 31 31 H 1.09006 * 109.47220 * 89.99847 * 16 15 14 32 32 H 1.08998 * 109.46942 * 209.99714 * 16 15 14 33 33 H 1.09003 * 109.47388 * 330.00482 * 16 15 14 34 34 H 1.08000 * 119.82956 * 180.27781 * 17 15 14 35 35 H 1.08002 * 120.04168 * 179.77153 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4499 1.4378 -0.3307 5 6 3.6536 0.9855 -1.7537 6 1 2.8052 0.6889 -2.3527 7 6 4.9229 0.9503 -2.2910 8 7 5.9560 1.3109 -1.5615 9 14 5.1751 0.3903 -4.0552 10 1 4.4227 1.2849 -4.9709 11 1 6.6212 0.4423 -4.3890 12 1 4.6822 -1.0022 -4.2078 13 6 1.7671 2.0028 1.2196 14 6 2.3714 1.5330 2.3784 15 6 2.1197 2.1482 3.5880 16 6 2.7784 1.6327 4.8415 17 6 1.2688 3.2397 3.6564 18 6 0.6559 3.7169 2.5183 19 6 0.9006 3.1050 1.2861 20 6 0.2715 3.5995 0.0985 21 7 -0.2277 3.9918 -0.8435 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8901 27 1 3.8112 2.4601 -0.2192 28 1 4.0027 0.7817 0.3417 29 1 6.8490 1.2857 -1.9394 30 1 3.0388 0.6851 2.3330 31 1 3.7313 2.1417 4.9869 32 1 2.1305 1.8232 5.6971 33 1 2.9501 0.5604 4.7472 34 1 1.0821 3.7166 4.6073 35 1 -0.0093 4.5657 2.5777 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051578496.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:09 Heat of formation + Delta-G solvation = 33.978487 kcal Electronic energy + Delta-G solvation = -17208.374012 eV Core-core repulsion = 14591.479040 eV Total energy + Delta-G solvation = -2616.894972 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.13524 -38.06765 -37.38484 -34.86134 -33.61482 -32.07880 -30.87076 -28.39725 -28.07825 -24.48589 -24.22713 -23.18144 -21.30022 -19.74409 -18.49339 -17.06412 -16.80169 -16.65944 -15.94364 -15.51739 -15.20329 -14.80538 -14.60284 -14.35707 -14.21954 -14.09043 -13.87850 -13.76161 -13.03007 -12.97116 -12.86461 -12.82127 -12.53189 -12.42567 -12.38433 -12.11801 -11.95717 -11.85262 -11.39538 -10.66223 -9.75699 -9.46295 -9.25424 -8.25254 -6.35115 -0.12675 0.39600 1.37062 1.40065 1.47887 1.81944 2.05372 2.35908 2.92357 3.03442 3.08193 3.14560 3.97893 4.00157 4.13243 4.31184 4.39451 4.47512 4.54983 4.72402 4.81717 4.87078 4.93154 4.94147 5.04839 5.07866 5.20755 5.26431 5.31312 5.34804 5.48201 5.62217 5.63736 5.92187 6.03795 6.15909 6.61019 6.77493 6.77948 7.33855 8.85172 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.007213 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.298584 B = 3881.060126 C = 4365.835284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.063 3.937 3 N -0.528 5.528 4 C 0.224 3.776 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.277 1.277 11 H -0.278 1.278 12 H -0.264 1.264 13 C 0.143 3.857 14 C -0.170 4.170 15 C -0.041 4.041 16 C -0.117 4.117 17 C -0.123 4.123 18 C -0.052 4.052 19 C -0.055 4.055 20 C 0.292 3.708 21 N -0.476 5.476 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.039 0.961 27 H -0.003 1.003 28 H -0.018 1.018 29 H 0.266 0.734 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.174 0.826 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.448 -0.115 15.290 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 N -0.250 5.250 4 C 0.100 3.900 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.202 1.202 11 H -0.203 1.203 12 H -0.189 1.189 13 C 0.045 3.955 14 C -0.190 4.190 15 C -0.043 4.043 16 C -0.173 4.173 17 C -0.141 4.141 18 C -0.072 4.072 19 C -0.060 4.060 20 C -0.022 4.022 21 N -0.153 5.153 22 H 0.100 0.900 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.015 0.985 28 H 0.000 1.000 29 H 0.075 0.925 30 H 0.133 0.867 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.191 0.809 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.277 0.740 13.427 16.337 hybrid contribution 1.312 -0.838 -0.584 1.663 sum -7.965 -0.098 12.843 15.113 Atomic orbital electron populations 1.21691 0.93915 1.02279 1.01188 1.22058 0.96132 0.87124 1.00967 1.59538 1.19896 1.18285 1.27303 1.19305 0.81064 0.94438 0.95198 1.21375 0.92846 1.44364 0.98203 0.92436 1.25807 0.95538 0.95356 1.02311 1.70051 0.99369 1.48787 1.38506 0.85516 0.77140 0.79150 0.79306 1.20225 1.20340 1.18907 1.19119 0.93508 0.93250 0.89592 1.21613 1.01944 1.02464 0.92966 1.20398 0.94770 0.94219 0.94880 1.20947 1.01184 1.01466 0.93724 1.21315 0.97009 0.96306 0.99444 1.21401 0.98058 0.98522 0.89246 1.16312 1.01986 0.98799 0.88888 1.25767 0.91964 0.91792 0.92697 1.81092 1.12336 1.11378 1.10481 0.90036 0.92685 0.94221 0.91419 0.94293 0.98527 0.99986 0.92503 0.86667 0.90109 0.88366 0.91458 0.80859 0.82122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.94 71.98 0.72 -3.54 16 2 C 0.06 2.45 5.44 86.30 0.47 2.92 16 3 N -0.53 -23.35 3.82 -698.78 -2.67 -26.02 16 4 C 0.22 11.99 4.30 85.56 0.37 12.36 16 5 C -0.53 -30.57 8.31 25.60 0.21 -30.36 16 6 H 0.06 3.32 7.23 -2.91 -0.02 3.30 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 9 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.14 5.25 3.73 38.67 0.14 5.39 16 14 C -0.17 -5.31 8.15 22.37 0.18 -5.13 16 15 C -0.04 -0.92 5.88 -19.84 -0.12 -1.04 16 16 C -0.12 -1.79 10.00 71.24 0.71 -1.08 16 17 C -0.12 -2.24 9.67 22.24 0.22 -2.02 16 18 C -0.05 -1.15 9.75 22.53 0.22 -0.93 16 19 C -0.06 -1.81 5.76 -21.15 -0.12 -1.93 16 20 C 0.29 11.14 14.81 88.33 1.31 12.44 16 21 N -0.48 -20.09 18.54 19.00 0.35 -19.74 16 22 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 23 H 0.05 1.65 7.52 -2.39 -0.02 1.63 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 2.92 6.60 -2.39 -0.02 2.90 16 26 H 0.04 1.40 7.06 -2.38 -0.02 1.38 16 27 H 0.00 -0.20 8.06 -2.39 -0.02 -0.22 16 28 H -0.02 -0.98 7.46 -2.39 -0.02 -0.99 16 29 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.12 3.85 7.13 -2.91 -0.02 3.83 16 31 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.10 0.94 8.08 -2.39 -0.02 0.92 16 33 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 34 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -69.96 303.78 5.84 -64.11 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: 1.08 Total: 1.73 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 4.77 Total: -11.96 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -2.03 Total: -101.04 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.96 5.84 -64.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051578496.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.093 kcal (2) G-P(sol) polarization free energy of solvation -69.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds