Wall clock time and date at job start Mon Mar 30 2020 06:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47209 * 2 1 4 4 H 1.09008 * 109.46953 * 55.47123 * 3 2 1 5 5 C 1.52998 * 109.47095 * 175.46611 * 3 2 1 6 6 C 1.47204 * 109.47068 * 184.99894 * 5 3 2 7 7 N 4.86390 * 126.44125 * 4.80701 * 2 1 3 8 8 N 1.46496 * 109.47264 * 295.46742 * 3 2 1 9 9 C 1.38855 * 119.99929 * 123.59308 * 8 3 2 10 10 C 1.39567 * 119.84421 * 352.95579 * 9 8 3 11 11 C 1.36336 * 120.16004 * 179.72222 * 10 9 8 12 12 C 1.40884 * 119.83785 * 0.54609 * 11 10 9 13 13 C 1.41142 * 120.15839 * 179.70366 * 12 11 10 14 14 H 1.08000 * 120.00145 * 207.89429 * 13 12 11 15 15 C 1.39863 * 120.00065 * 27.88567 * 13 12 11 16 16 N 1.30902 * 119.99857 * 12.71675 * 15 13 12 17 17 Si 1.86796 * 120.00384 * 192.71420 * 15 13 12 18 18 H 1.48509 * 109.47060 * 60.00134 * 17 15 13 19 19 H 1.48496 * 109.47280 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46941 * 300.00275 * 17 15 13 21 21 C 1.40886 * 119.69229 * 359.72787 * 12 11 10 22 22 C 1.36346 * 119.83211 * 359.97438 * 21 12 11 23 23 H 1.08999 * 109.47480 * 185.14186 * 1 2 3 24 24 H 1.08999 * 109.47317 * 305.14223 * 1 2 3 25 25 H 1.09002 * 109.47047 * 65.14201 * 1 2 3 26 26 H 1.09000 * 109.47396 * 239.99460 * 2 1 3 27 27 H 1.09002 * 109.46726 * 119.99895 * 2 1 3 28 28 H 1.08995 * 109.47511 * 304.99918 * 5 3 2 29 29 H 1.09004 * 109.47214 * 65.00298 * 5 3 2 30 30 H 0.96998 * 120.00125 * 303.59705 * 8 3 2 31 31 H 1.07997 * 119.92017 * 359.97438 * 10 9 8 32 32 H 1.08004 * 120.08451 * 180.28160 * 11 10 9 33 33 H 0.97002 * 120.00139 * 179.97438 * 16 15 13 34 34 H 1.07990 * 120.08870 * 179.97438 * 21 12 11 35 35 H 1.07999 * 119.92210 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6119 1.9792 0.8467 5 6 3.5657 1.4439 0.1140 6 6 4.0474 2.8297 0.2347 7 7 4.4191 3.8991 0.3279 8 7 1.6428 2.1009 -1.2470 9 6 0.9010 3.2740 -1.2069 10 6 0.4100 3.7440 0.0120 11 6 -0.3143 4.8981 0.0596 12 6 -0.5765 5.6105 -1.1273 13 6 -1.3309 6.8027 -1.0867 14 1 -1.9082 7.1060 -1.9476 15 6 -1.3310 7.5912 0.0684 16 7 -0.4522 7.3688 1.0128 17 14 -2.5851 8.9618 0.2636 18 1 -3.9547 8.3895 0.2199 19 1 -2.3744 9.6437 1.5658 20 1 -2.4227 9.9421 -0.8399 21 6 -0.0825 5.1271 -2.3550 22 6 0.6455 3.9747 -2.3867 23 1 -0.3634 -1.0235 0.0921 24 1 -0.3634 0.5915 0.8403 25 1 -0.3633 0.4320 -0.9325 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.8647 0.8773 0.9958 29 1 3.9970 0.9856 -0.7760 30 1 1.8980 1.7173 -2.1006 31 1 0.6077 3.1943 0.9204 32 1 -0.6898 5.2631 1.0041 33 1 -0.4521 7.9159 1.8138 34 1 -0.2800 5.6678 -3.2686 35 1 1.0245 3.6026 -3.3270 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:40 Heat of formation + Delta-G solvation = 39.202137 kcal Electronic energy + Delta-G solvation = -16973.881567 eV Core-core repulsion = 14357.213110 eV Total energy + Delta-G solvation = -2616.668458 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 4.36 seconds Orbital eigenvalues (eV) -38.59443 -36.83943 -35.55037 -33.59634 -31.72629 -30.40500 -29.47493 -28.13492 -24.80777 -23.81105 -21.87702 -20.63298 -19.53705 -17.35883 -17.19661 -16.38300 -15.39025 -14.87247 -14.67343 -14.00294 -13.88161 -13.69092 -12.88861 -12.62830 -12.58094 -12.37430 -12.04277 -11.82457 -11.79837 -11.58292 -11.28687 -11.05207 -10.98631 -10.87365 -10.71520 -10.57357 -10.42941 -9.67325 -9.31260 -9.18720 -8.54820 -7.47714 -6.55688 -6.37152 -4.03318 2.94665 3.11518 3.15002 3.16584 3.17843 3.19659 3.36953 4.08650 4.19493 4.28365 4.79964 4.94370 5.17093 5.22053 5.37257 5.51353 5.64936 5.82256 5.88800 5.94267 6.03878 6.20136 6.28431 6.39700 6.50501 6.92327 6.94290 7.22027 7.38790 7.55840 7.71131 7.85614 7.97811 8.17082 8.29290 8.49678 8.68594 8.81179 9.09412 9.16791 10.44417 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.005974 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.339613 B = 4685.712598 C = 4981.125376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.156 3.844 4 H 0.096 0.904 5 C -0.040 4.040 6 C 0.203 3.797 7 N -0.428 5.428 8 N -0.752 5.752 9 C 0.096 3.904 10 C -0.165 4.165 11 C -0.118 4.118 12 C 0.075 3.925 13 C -0.468 4.468 14 H 0.071 0.929 15 C 0.072 3.928 16 N -0.813 5.813 17 Si 0.905 3.095 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.185 4.185 22 C -0.159 4.159 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.385 0.615 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.276 0.724 34 H 0.090 0.910 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -13.962 0.096 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.047 3.953 4 H 0.114 0.886 5 C -0.082 4.082 6 C -0.115 4.115 7 N -0.105 5.105 8 N -0.387 5.387 9 C 0.000 4.000 10 C -0.186 4.186 11 C -0.138 4.138 12 C 0.072 3.928 13 C -0.499 4.499 14 H 0.089 0.911 15 C -0.142 4.142 16 N -0.441 5.441 17 Si 0.731 3.269 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.205 4.205 22 C -0.181 4.181 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.218 0.782 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.982 -12.240 0.653 12.888 hybrid contribution -0.491 0.208 -0.243 0.586 sum 3.491 -12.031 0.410 12.534 Atomic orbital electron populations 1.21661 0.95040 1.00589 1.03077 1.21881 0.97127 0.95918 1.01847 1.20806 0.89904 0.93613 0.90989 0.88583 1.19863 0.98334 0.85347 1.04654 1.28945 0.93733 0.95145 0.93705 1.81229 1.09356 1.11569 1.08308 1.43859 1.62975 1.26809 1.05044 1.17277 0.99737 0.89000 0.93988 1.20116 1.04835 0.99415 0.94248 1.20962 1.00353 0.93086 0.99412 1.17502 0.91987 0.92632 0.90676 1.19329 1.26116 1.05320 0.99169 0.91096 1.25784 0.94930 0.98217 0.95273 1.69824 1.29814 1.37015 1.07423 0.86425 0.81646 0.80854 0.77995 1.19141 1.20608 1.19325 1.20579 1.04079 0.98212 0.97621 1.19812 1.05573 0.98027 0.94697 0.93484 0.92685 0.91914 0.91859 0.91458 0.87450 0.87992 0.78223 0.89377 0.86358 0.91348 0.89142 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.73 37.16 0.36 -1.27 16 2 C -0.13 -1.18 5.61 -26.73 -0.15 -1.33 16 3 C 0.16 1.87 2.24 -67.93 -0.15 1.72 16 4 H 0.10 1.38 5.28 -51.92 -0.27 1.10 16 5 C -0.04 -0.40 5.39 -29.52 -0.16 -0.55 16 6 C 0.20 3.17 15.14 -20.76 -0.31 2.85 16 7 N -0.43 -8.49 18.54 42.15 0.78 -7.71 16 8 N -0.75 -11.43 4.28 -52.03 -0.22 -11.65 16 9 C 0.10 2.00 6.66 -83.69 -0.56 1.44 16 10 C -0.16 -3.77 9.23 -39.77 -0.37 -4.14 16 11 C -0.12 -3.13 8.61 -39.27 -0.34 -3.47 16 12 C 0.07 2.06 5.55 -106.79 -0.59 1.47 16 13 C -0.47 -12.99 9.04 -37.87 -0.34 -13.34 16 14 H 0.07 1.90 7.88 -52.49 -0.41 1.48 16 15 C 0.07 1.92 5.22 -17.34 -0.09 1.83 16 16 N -0.81 -22.38 10.88 55.54 0.60 -21.77 16 17 Si 0.91 19.81 29.58 -169.99 -5.03 14.78 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 C -0.18 -4.65 9.74 -39.26 -0.38 -5.03 16 22 C -0.16 -3.55 9.83 -39.77 -0.39 -3.94 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.83 7.88 -51.93 -0.41 0.42 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.38 5.13 8.83 -40.82 -0.36 4.77 16 31 H 0.09 1.83 5.73 -52.49 -0.30 1.53 16 32 H 0.12 3.28 6.21 -52.48 -0.33 2.95 16 33 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 34 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 35 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 301.65 15.07 4.55 4.55 Total: -1.00 -31.55 301.65 -7.40 -38.95 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -4.60 Total: 6.62 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -3.48 Total: -23.76 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 1.16 Total: -41.13 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.55 -7.40 -38.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.148 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.36 seconds