Wall clock time and date at job start Mon Mar 30 2020 06:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47209 * 2 1 4 4 H 1.09008 * 109.46953 * 55.47123 * 3 2 1 5 5 C 1.52998 * 109.47095 * 175.46611 * 3 2 1 6 6 C 1.47204 * 109.47068 * 184.99894 * 5 3 2 7 7 N 4.86390 * 126.44125 * 4.80701 * 2 1 3 8 8 N 1.46496 * 109.47264 * 295.46742 * 3 2 1 9 9 C 1.38855 * 119.99929 * 123.59308 * 8 3 2 10 10 C 1.39567 * 119.84421 * 352.95579 * 9 8 3 11 11 C 1.36336 * 120.16004 * 179.72222 * 10 9 8 12 12 C 1.40884 * 119.83785 * 0.54609 * 11 10 9 13 13 C 1.41142 * 120.15839 * 179.70366 * 12 11 10 14 14 H 1.08000 * 120.00145 * 207.89429 * 13 12 11 15 15 C 1.39863 * 120.00065 * 27.88567 * 13 12 11 16 16 N 1.30902 * 119.99857 * 12.71675 * 15 13 12 17 17 Si 1.86796 * 120.00384 * 192.71420 * 15 13 12 18 18 H 1.48509 * 109.47060 * 60.00134 * 17 15 13 19 19 H 1.48496 * 109.47280 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46941 * 300.00275 * 17 15 13 21 21 C 1.40886 * 119.69229 * 359.72787 * 12 11 10 22 22 C 1.36346 * 119.83211 * 359.97438 * 21 12 11 23 23 H 1.08999 * 109.47480 * 185.14186 * 1 2 3 24 24 H 1.08999 * 109.47317 * 305.14223 * 1 2 3 25 25 H 1.09002 * 109.47047 * 65.14201 * 1 2 3 26 26 H 1.09000 * 109.47396 * 239.99460 * 2 1 3 27 27 H 1.09002 * 109.46726 * 119.99895 * 2 1 3 28 28 H 1.08995 * 109.47511 * 304.99918 * 5 3 2 29 29 H 1.09004 * 109.47214 * 65.00298 * 5 3 2 30 30 H 0.96998 * 120.00125 * 303.59705 * 8 3 2 31 31 H 1.07997 * 119.92017 * 359.97438 * 10 9 8 32 32 H 1.08004 * 120.08451 * 180.28160 * 11 10 9 33 33 H 0.97002 * 120.00139 * 179.97438 * 16 15 13 34 34 H 1.07990 * 120.08870 * 179.97438 * 21 12 11 35 35 H 1.07999 * 119.92210 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6119 1.9792 0.8467 5 6 3.5657 1.4439 0.1140 6 6 4.0474 2.8297 0.2347 7 7 4.4191 3.8991 0.3279 8 7 1.6428 2.1009 -1.2470 9 6 0.9010 3.2740 -1.2069 10 6 0.4100 3.7440 0.0120 11 6 -0.3143 4.8981 0.0596 12 6 -0.5765 5.6105 -1.1273 13 6 -1.3309 6.8027 -1.0867 14 1 -1.9082 7.1060 -1.9476 15 6 -1.3310 7.5912 0.0684 16 7 -0.4522 7.3688 1.0128 17 14 -2.5851 8.9618 0.2636 18 1 -3.9547 8.3895 0.2199 19 1 -2.3744 9.6437 1.5658 20 1 -2.4227 9.9421 -0.8399 21 6 -0.0825 5.1271 -2.3550 22 6 0.6455 3.9747 -2.3867 23 1 -0.3634 -1.0235 0.0921 24 1 -0.3634 0.5915 0.8403 25 1 -0.3633 0.4320 -0.9325 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.8647 0.8773 0.9958 29 1 3.9970 0.9856 -0.7760 30 1 1.8980 1.7173 -2.1006 31 1 0.6077 3.1943 0.9204 32 1 -0.6898 5.2631 1.0041 33 1 -0.4521 7.9159 1.8138 34 1 -0.2800 5.6678 -3.2686 35 1 1.0245 3.6026 -3.3270 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:38 Heat of formation + Delta-G solvation = 20.030223 kcal Electronic energy + Delta-G solvation = -16974.712924 eV Core-core repulsion = 14357.213110 eV Total energy + Delta-G solvation = -2617.499814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.09522 -38.31633 -36.91544 -35.36442 -33.19047 -31.42326 -31.36299 -29.86561 -26.40571 -25.09285 -23.40217 -22.32677 -20.93562 -19.16429 -18.51616 -17.82245 -16.93072 -16.50180 -15.70354 -15.64471 -15.14025 -14.87804 -14.55072 -14.23608 -14.00970 -13.75925 -13.59009 -13.48921 -13.29034 -12.81990 -12.76153 -12.71622 -12.37100 -12.24896 -11.96430 -11.73624 -11.63415 -11.53928 -11.09890 -11.01423 -10.26130 -9.39370 -8.50544 -8.10685 -6.03505 1.11214 1.19718 1.36301 1.48216 1.57526 1.96242 2.00695 2.25834 2.85331 2.96244 3.27349 3.83603 4.02601 4.20188 4.36994 4.50281 4.54884 4.65345 4.80236 4.84353 5.01008 5.07214 5.13684 5.18977 5.26137 5.29090 5.43903 5.46169 5.62610 5.72016 5.83384 5.98259 6.18426 6.40077 6.67820 6.82138 6.89924 7.08461 7.18996 7.38918 8.50493 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.005974 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.339613 B = 4685.712598 C = 4981.125376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.149 3.851 4 H 0.070 0.930 5 C -0.035 4.035 6 C 0.228 3.772 7 N -0.516 5.516 8 N -0.741 5.741 9 C 0.132 3.868 10 C -0.177 4.177 11 C -0.138 4.138 12 C 0.028 3.972 13 C -0.507 4.507 14 H 0.066 0.934 15 C 0.026 3.974 16 N -0.853 5.853 17 Si 0.979 3.021 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.263 1.263 21 C -0.194 4.194 22 C -0.174 4.174 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.157 0.843 29 H 0.142 0.858 30 H 0.401 0.599 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.279 0.721 34 H 0.092 0.908 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 -17.177 -0.229 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.042 3.958 4 H 0.088 0.912 5 C -0.075 4.075 6 C -0.088 4.088 7 N -0.194 5.194 8 N -0.375 5.375 9 C 0.032 3.968 10 C -0.199 4.199 11 C -0.158 4.158 12 C 0.025 3.975 13 C -0.539 4.539 14 H 0.084 0.916 15 C -0.184 4.184 16 N -0.482 5.482 17 Si 0.801 3.199 18 H -0.184 1.184 19 H -0.196 1.196 20 H -0.188 1.188 21 C -0.214 4.214 22 C -0.196 4.196 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.174 0.826 29 H 0.160 0.840 30 H 0.236 0.764 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.074 -15.521 0.315 16.333 hybrid contribution -0.712 0.910 -0.193 1.171 sum 4.362 -14.612 0.122 15.250 Atomic orbital electron populations 1.21689 0.97011 1.01221 1.00830 1.21819 0.95134 0.93611 1.04829 1.21072 0.91521 0.95020 0.88236 0.91191 1.20284 0.95974 0.82466 1.08824 1.30129 0.91680 0.95911 0.91128 1.81270 1.12198 1.14519 1.11461 1.43961 1.61270 1.24778 1.07529 1.17321 0.97256 0.89666 0.92515 1.20300 1.04659 0.98750 0.96181 1.20891 1.01957 0.94692 0.98310 1.17825 0.94038 0.93654 0.91958 1.19567 1.27689 1.06568 1.00100 0.91592 1.26633 0.96601 1.00621 0.94551 1.69923 1.31579 1.38584 1.08096 0.85308 0.78873 0.77530 0.78224 1.18426 1.19619 1.18776 1.20790 1.04323 0.99368 0.96963 1.20147 1.05288 0.97447 0.96708 0.91516 0.94664 0.94448 0.89248 0.88002 0.82567 0.84048 0.76372 0.87473 0.88752 0.91108 0.88975 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.73 71.98 0.70 -2.18 16 2 C -0.12 -1.46 5.61 30.59 0.17 -1.29 16 3 C 0.15 2.94 2.24 44.99 0.10 3.04 16 4 H 0.07 1.81 5.28 -2.38 -0.01 1.80 16 5 C -0.03 -0.49 5.39 28.79 0.16 -0.33 16 6 C 0.23 6.55 15.14 89.44 1.35 7.90 16 7 N -0.52 -20.35 18.54 20.01 0.37 -19.98 16 8 N -0.74 -19.95 4.28 -318.54 -1.36 -21.31 16 9 C 0.13 5.33 6.66 38.67 0.26 5.59 16 10 C -0.18 -8.23 9.23 22.15 0.20 -8.03 16 11 C -0.14 -7.71 8.61 22.47 0.19 -7.52 16 12 C 0.03 1.62 5.55 -21.27 -0.12 1.50 16 13 C -0.51 -29.82 9.04 23.38 0.21 -29.61 16 14 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 15 C 0.03 1.45 5.22 85.22 0.44 1.89 16 16 N -0.85 -49.50 10.88 21.81 0.24 -49.26 16 17 Si 0.98 42.24 29.58 68.60 2.03 44.27 16 18 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 21 C -0.19 -10.06 9.74 22.48 0.22 -9.84 16 22 C -0.17 -7.61 9.83 22.15 0.22 -7.40 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.04 0.89 7.88 -2.39 -0.02 0.87 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.14 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.40 8.76 8.83 -92.71 -0.82 7.94 16 31 H 0.11 4.47 5.73 -2.91 -0.02 4.46 16 32 H 0.09 5.61 6.21 -2.91 -0.02 5.59 16 33 H 0.28 14.89 8.30 -92.71 -0.77 14.12 16 34 H 0.09 4.57 8.06 -2.92 -0.02 4.55 16 35 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -76.50 301.65 5.67 -70.83 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.28 Total: 21.72 kcal Atomic # 6 Polarization: -50.38 SS G_CDS: 4.11 Total: -46.27 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -0.75 Total: -90.56 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -76.50 5.67 -70.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.858 kcal (2) G-P(sol) polarization free energy of solvation -76.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds