Wall clock time and date at job start Mon Mar 30 2020 07:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46903 * 110.99794 * 2 1 4 4 C 1.53002 * 109.46938 * 66.04961 * 3 2 1 5 5 C 1.47198 * 109.47076 * 180.02562 * 4 3 2 6 6 N 4.80848 * 103.18670 * 16.35521 * 2 1 3 7 7 C 1.46896 * 111.00050 * 236.04839 * 2 1 3 8 8 H 1.09008 * 109.47160 * 63.95397 * 7 2 1 9 9 C 1.50701 * 109.47245 * 183.94889 * 7 2 1 10 10 H 1.08002 * 119.99486 * 54.81915 * 9 7 2 11 11 C 1.37875 * 120.00535 * 234.81800 * 9 7 2 12 12 N 1.31511 * 120.00388 * 183.02559 * 11 9 7 13 13 Si 1.86802 * 119.99520 * 3.02293 * 11 9 7 14 14 H 1.48497 * 109.47066 * 85.65486 * 13 11 9 15 15 H 1.48499 * 109.46869 * 205.65372 * 13 11 9 16 16 H 1.48499 * 109.47225 * 325.65063 * 13 11 9 17 17 C 1.50696 * 109.47254 * 303.95376 * 7 2 1 18 18 C 1.38244 * 119.99652 * 313.05349 * 17 7 2 19 19 C 1.38233 * 119.99523 * 179.80887 * 18 17 7 20 20 C 1.38237 * 120.00380 * 0.40192 * 19 18 17 21 21 C 1.38234 * 119.99952 * 359.85144 * 20 19 18 22 22 C 1.38232 * 120.00290 * 133.32718 * 17 7 2 23 23 H 1.08998 * 109.46723 * 183.95399 * 1 2 3 24 24 H 1.09000 * 109.46779 * 303.95197 * 1 2 3 25 25 H 1.08996 * 109.47205 * 63.95433 * 1 2 3 26 26 H 1.09001 * 109.47010 * 186.04506 * 3 2 1 27 27 H 1.08999 * 109.47122 * 306.04914 * 3 2 1 28 28 H 1.09001 * 109.46899 * 299.99613 * 4 3 2 29 29 H 1.08999 * 109.47604 * 59.99619 * 4 3 2 30 30 H 0.96990 * 120.00187 * 179.97438 * 12 11 9 31 31 H 1.07995 * 120.00079 * 359.97438 * 18 17 7 32 32 H 1.07999 * 119.99878 * 180.22976 * 19 18 17 33 33 H 1.08004 * 120.00232 * 179.83635 * 20 19 18 34 34 H 1.07998 * 120.00421 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.99984 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1584 3.4318 1.3181 6 7 2.5660 4.4922 1.3183 7 6 1.9955 -0.7659 -1.1376 8 1 1.7044 -0.2798 -2.0688 9 6 3.4988 -0.8253 -1.0506 10 1 3.9735 -1.1993 -0.1555 11 6 4.2682 -0.4023 -2.1137 12 7 5.5779 -0.5094 -2.0613 13 14 3.4502 0.3229 -3.6284 14 1 3.2198 1.7749 -3.4192 15 1 4.3303 0.1262 -4.8082 16 1 2.1503 -0.3561 -3.8619 17 6 1.4347 -2.1642 -1.1043 18 6 1.4368 -2.8818 0.0773 19 6 0.9188 -4.1630 0.1087 20 6 0.4063 -4.7298 -1.0433 21 6 0.4090 -4.0143 -2.2260 22 6 0.9234 -2.7315 -2.2565 23 1 -0.3633 -1.0252 0.0709 24 1 -0.3633 0.5740 0.8525 25 1 -0.3633 0.4512 -0.9233 26 1 3.0798 1.3445 -0.1082 27 1 1.5611 1.9274 -0.8309 28 1 0.5472 2.0844 1.4266 29 1 2.0658 1.5015 2.1492 30 1 6.1191 -0.2122 -2.8093 31 1 1.8406 -2.4404 0.9764 32 1 0.9169 -4.7222 1.0326 33 1 0.0039 -5.7319 -1.0193 34 1 0.0090 -4.4572 -3.1261 35 1 0.9255 -2.1724 -3.1805 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020012.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:11 Heat of formation + Delta-G solvation = 39.533760 kcal Electronic energy + Delta-G solvation = -17302.858698 eV Core-core repulsion = 14686.204620 eV Total energy + Delta-G solvation = -2616.654078 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.33591 -38.52466 -37.35212 -34.77927 -33.25609 -31.56521 -31.00882 -29.38721 -26.41721 -24.89185 -23.31492 -22.48877 -20.94473 -19.13356 -18.47389 -17.49811 -16.68896 -16.46100 -15.94745 -15.77610 -15.37522 -14.88827 -14.72957 -14.62005 -14.13270 -14.04832 -13.79836 -13.51106 -13.33447 -13.15000 -12.91992 -12.64364 -12.44899 -12.16104 -11.99855 -11.77734 -11.53574 -11.43473 -11.34337 -10.73901 -9.57345 -9.28192 -8.94628 -8.31223 -6.31737 0.72381 0.77886 1.26056 1.28562 1.35383 1.75118 1.83175 2.27068 2.85789 3.09491 3.24156 3.64081 4.16283 4.23195 4.32356 4.33622 4.43314 4.51658 4.58972 4.70055 4.74337 4.88848 4.91674 5.01407 5.14783 5.21371 5.25312 5.35653 5.44008 5.53120 5.80397 5.84888 6.03522 6.14532 6.34794 6.45085 6.60128 6.70134 6.79938 7.32398 8.84733 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.009275 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.680050 B = 3018.029600 C = 4021.074285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.530 5.530 3 C 0.064 3.936 4 C -0.011 4.011 5 C 0.240 3.760 6 N -0.503 5.503 7 C 0.215 3.785 8 H 0.008 0.992 9 C -0.477 4.477 10 H 0.046 0.954 11 C 0.025 3.975 12 N -0.938 5.938 13 Si 0.914 3.086 14 H -0.271 1.271 15 H -0.290 1.290 16 H -0.244 1.244 17 C -0.055 4.055 18 C -0.106 4.106 19 C -0.126 4.126 20 C -0.139 4.139 21 C -0.125 4.125 22 C -0.154 4.154 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.013 0.987 26 H 0.064 0.936 27 H 0.022 0.978 28 H 0.142 0.858 29 H 0.135 0.865 30 H 0.265 0.735 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.448 -4.509 3.520 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.254 5.254 3 C -0.066 4.066 4 C -0.050 4.050 5 C -0.077 4.077 6 N -0.182 5.182 7 C 0.108 3.892 8 H 0.026 0.974 9 C -0.516 4.516 10 H 0.064 0.936 11 C -0.174 4.174 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.196 1.196 15 H -0.216 1.216 16 H -0.168 1.168 17 C -0.056 4.056 18 C -0.124 4.124 19 C -0.144 4.144 20 C -0.157 4.157 21 C -0.143 4.143 22 C -0.173 4.173 23 H 0.083 0.917 24 H 0.116 0.884 25 H 0.031 0.969 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.159 0.841 29 H 0.153 0.847 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.154 0.846 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.522 -3.110 3.855 14.400 hybrid contribution 0.214 0.551 -1.844 1.936 sum -13.308 -2.559 2.011 13.700 Atomic orbital electron populations 1.22590 0.87459 1.02515 1.00767 1.62044 1.07236 1.11646 1.44471 1.21764 1.01283 0.88564 0.94943 1.19446 1.03812 0.81401 1.00390 1.29729 0.91674 0.95032 0.91228 1.81185 1.11384 1.14922 1.10691 1.18663 0.93130 0.88593 0.88793 0.97423 1.20885 0.89341 1.40283 1.01068 0.93599 1.25718 0.94991 0.95968 1.00712 1.69998 1.05794 1.48925 1.33060 0.86256 0.79707 0.79685 0.80405 1.19627 1.21628 1.16776 1.20158 0.94364 0.97248 0.93805 1.21009 0.99038 0.94607 0.97790 1.21422 0.98697 0.94963 0.99328 1.21329 1.01252 1.00631 0.92521 1.21263 1.00020 0.93856 0.99128 1.21133 1.01471 0.97173 0.97533 0.91702 0.88415 0.96877 0.91749 0.95971 0.84055 0.84699 0.92617 0.86346 0.84239 0.83786 0.84573 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.38 8.99 127.69 1.15 1.53 16 2 N -0.53 -18.14 4.17 -905.90 -3.78 -21.92 16 3 C 0.06 2.13 4.75 86.30 0.41 2.54 16 4 C -0.01 -0.24 5.63 28.79 0.16 -0.08 16 5 C 0.24 6.96 15.43 89.44 1.38 8.34 16 6 N -0.50 -17.69 18.54 20.01 0.37 -17.32 16 7 C 0.21 9.08 1.63 43.42 0.07 9.15 16 8 H 0.01 0.36 4.32 -2.38 -0.01 0.35 16 9 C -0.48 -24.92 7.40 25.60 0.19 -24.74 16 10 H 0.05 2.71 8.06 -2.91 -0.02 2.68 16 11 C 0.02 1.37 5.47 84.65 0.46 1.84 16 12 N -0.94 -56.37 13.96 21.45 0.30 -56.07 16 13 Si 0.91 42.49 27.21 68.60 1.87 44.36 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 15 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 16 H -0.24 -10.45 6.02 99.48 0.60 -9.85 16 17 C -0.05 -2.12 3.55 -19.87 -0.07 -2.19 16 18 C -0.11 -3.70 8.46 22.27 0.19 -3.51 16 19 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 20 C -0.14 -3.69 10.05 22.27 0.22 -3.46 16 21 C -0.12 -3.66 10.05 22.27 0.22 -3.44 16 22 C -0.15 -5.58 9.67 22.27 0.22 -5.36 16 23 H 0.06 1.77 6.42 -2.39 -0.02 1.75 16 24 H 0.10 1.81 6.30 -2.39 -0.02 1.80 16 25 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.06 2.68 6.77 -2.39 -0.02 2.66 16 27 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 28 H 0.14 2.14 6.47 -2.39 -0.02 2.13 16 29 H 0.14 2.69 8.14 -2.39 -0.02 2.68 16 30 H 0.26 15.13 8.31 -92.72 -0.77 14.36 16 31 H 0.12 4.21 7.93 -2.91 -0.02 4.19 16 32 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 35 H 0.10 3.72 7.59 -2.91 -0.02 3.70 16 Total: -1.00 -66.24 295.99 4.56 -61.68 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.97 Total: 12.03 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 4.83 Total: -22.76 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -3.11 Total: -95.31 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.87 Total: 44.36 kcal Total: -66.24 4.56 -61.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020012.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.211 kcal (2) G-P(sol) polarization free energy of solvation -66.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds