Wall clock time and date at job start Mon Mar 30 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47262 * 2 1 4 4 N 1.30112 * 124.95456 * 270.14362 * 3 2 1 5 5 C 1.35787 * 109.64412 * 180.26443 * 4 3 2 6 6 C 1.39737 * 133.59294 * 179.74263 * 5 4 3 7 7 C 1.36604 * 119.88007 * 180.02562 * 6 5 4 8 8 C 1.38775 * 120.67442 * 359.96447 * 7 6 5 9 9 C 1.37861 * 120.44528 * 0.02562 * 8 7 6 10 10 C 1.38832 * 119.69090 * 0.02562 * 9 8 7 11 11 N 1.36038 * 124.95077 * 89.99750 * 3 2 1 12 12 C 1.46500 * 126.34842 * 0.02562 * 11 3 2 13 13 C 1.52997 * 109.47473 * 269.71414 * 12 11 3 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 H 1.08996 * 109.47304 * 300.00253 * 1 2 3 23 23 H 1.09006 * 109.47181 * 59.99873 * 1 2 3 24 24 H 1.09000 * 109.47343 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47304 * 239.99747 * 2 1 3 26 26 H 1.09003 * 109.46667 * 119.99588 * 2 1 3 27 27 H 1.07996 * 120.06293 * 0.02562 * 6 5 4 28 28 H 1.08000 * 119.66603 * 179.97438 * 7 6 5 29 29 H 1.07997 * 119.78111 * 180.02562 * 8 7 6 30 30 H 1.07998 * 120.15305 * 179.97438 * 9 8 7 31 31 H 1.09002 * 109.47129 * 149.71156 * 12 11 3 32 32 H 1.08998 * 109.46845 * 29.71963 * 12 11 3 33 33 H 1.09002 * 109.47153 * 59.99757 * 13 12 11 34 34 H 1.09001 * 109.46832 * 299.99948 * 13 12 11 35 35 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2783 2.1244 -1.0664 5 6 2.7213 3.3569 -0.7079 6 6 3.1253 4.4832 -1.4296 7 6 3.5300 5.6071 -0.7669 8 6 3.5445 5.6444 0.6203 9 6 3.1500 4.5452 1.3528 10 6 2.7365 3.3938 0.6965 11 7 2.2921 2.1555 1.1150 12 6 2.1360 1.7125 2.5027 13 6 0.7238 2.0450 2.9884 14 6 0.5630 1.5887 4.4157 15 1 1.3859 1.1099 4.9255 16 6 -0.6344 1.7836 5.0710 17 7 -1.6362 2.3672 4.4504 18 14 -0.8333 1.2186 6.8403 19 1 -0.4374 2.3168 7.7581 20 1 -2.2517 0.8544 7.0872 21 1 0.0307 0.0355 7.0824 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.1174 4.4653 -2.5094 28 1 3.8419 6.4755 -1.3282 29 1 3.8668 6.5406 1.1294 30 1 3.1635 4.5793 2.4322 31 1 2.8659 2.2226 3.1313 32 1 2.2961 0.6359 2.5605 33 1 -0.0062 1.5350 2.3599 34 1 0.5638 3.1217 2.9306 35 1 -2.4787 2.5039 4.9113 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057406708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:42 Heat of formation + Delta-G solvation = 33.772189 kcal Electronic energy + Delta-G solvation = -17199.801712 eV Core-core repulsion = 14582.897794 eV Total energy + Delta-G solvation = -2616.903918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.12242 -38.47292 -36.39545 -34.67758 -34.37016 -32.04033 -30.55866 -29.69691 -26.94321 -25.42120 -23.74416 -22.96819 -22.53264 -20.59793 -18.80769 -18.30570 -17.55481 -16.80309 -16.41219 -16.18613 -15.54903 -15.09348 -14.91473 -14.67490 -14.58698 -14.32437 -13.62480 -13.54010 -12.99535 -12.86149 -12.84317 -12.52734 -12.37925 -12.32545 -12.22881 -11.96760 -11.82327 -11.41265 -11.10856 -10.92797 -10.62217 -9.20508 -8.99601 -8.26315 -6.40010 0.03754 0.62933 1.40822 1.41373 1.52572 1.72476 1.85320 2.38472 2.95045 3.08349 3.19533 3.54209 3.86191 4.09140 4.15243 4.18035 4.26338 4.36175 4.47419 4.53365 4.60242 4.67118 4.74483 4.83395 4.93273 5.04755 5.16750 5.21376 5.38018 5.49913 5.59178 5.59816 5.66901 5.73448 6.00811 6.03741 6.27792 6.75621 6.93334 7.30812 8.85454 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023814 B = 0.006678 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.516390 B = 4192.103001 C = 4989.921193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C 0.276 3.724 4 N -0.529 5.529 5 C 0.013 3.987 6 C -0.084 4.084 7 C -0.121 4.121 8 C -0.103 4.103 9 C -0.125 4.125 10 C 0.018 3.982 11 N -0.484 5.484 12 C 0.123 3.877 13 C 0.024 3.976 14 C -0.541 4.541 15 H 0.073 0.927 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.968 3.032 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.257 1.257 22 H 0.034 0.966 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.140 0.860 28 H 0.166 0.834 29 H 0.160 0.840 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.007 0.993 34 H -0.019 1.019 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.462 0.552 -7.222 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C 0.011 3.989 4 N -0.250 5.250 5 C -0.106 4.106 6 C -0.104 4.104 7 C -0.141 4.141 8 C -0.123 4.123 9 C -0.146 4.146 10 C -0.092 4.092 11 N -0.171 5.171 12 C 0.002 3.998 13 C -0.014 4.014 14 C -0.580 4.580 15 H 0.091 0.909 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.792 3.208 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.181 1.181 22 H 0.053 0.947 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.135 0.865 26 H 0.115 0.885 27 H 0.158 0.842 28 H 0.183 0.817 29 H 0.178 0.822 30 H 0.138 0.862 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.026 0.974 34 H -0.001 1.001 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.188 0.287 -7.885 12.110 hybrid contribution -0.601 0.195 1.805 1.912 sum 8.587 0.483 -6.079 10.532 Atomic orbital electron populations 1.21750 0.93621 1.03582 1.01264 1.20283 0.96633 0.85349 1.05703 1.24231 0.96915 0.97151 0.80643 1.70328 1.22457 1.04099 1.28122 1.19603 1.05405 0.94616 0.90946 1.20293 0.99376 0.90382 1.00324 1.21022 1.00582 0.98230 0.94304 1.21268 0.99057 0.97517 0.94418 1.20320 1.02873 0.91395 1.00027 1.19398 1.05075 0.88954 0.95739 1.45756 1.52132 1.10823 1.08412 1.22023 0.99670 1.01322 0.76742 1.19272 0.91096 0.94919 0.96097 1.21427 0.99012 1.39748 0.97771 0.90913 1.25954 0.95465 0.94878 1.03013 1.70119 1.04058 1.43645 1.39180 0.85396 0.77486 0.79085 0.78792 1.20009 1.21055 1.18053 0.94687 0.92952 0.88740 0.86477 0.88458 0.84196 0.81675 0.82212 0.86227 0.89721 0.87884 0.97432 1.00068 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.89 71.98 0.71 -3.71 16 2 C -0.04 -1.20 6.23 29.85 0.19 -1.01 16 3 C 0.28 10.40 7.11 137.92 0.98 11.39 16 4 N -0.53 -21.09 11.27 -179.98 -2.03 -23.12 16 5 C 0.01 0.50 7.23 39.44 0.29 0.78 16 6 C -0.08 -2.57 10.05 22.25 0.22 -2.34 16 7 C -0.12 -2.99 9.96 22.02 0.22 -2.77 16 8 C -0.10 -2.73 10.03 22.31 0.22 -2.51 16 9 C -0.13 -4.29 10.05 22.32 0.22 -4.07 16 10 C 0.02 0.71 6.87 38.86 0.27 0.98 16 11 N -0.48 -19.34 2.81 -505.61 -1.42 -20.76 16 12 C 0.12 4.93 5.87 86.38 0.51 5.43 16 13 C 0.02 1.21 5.30 29.85 0.16 1.37 16 14 C -0.54 -28.73 9.11 25.60 0.23 -28.49 16 15 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 16 C 0.01 0.31 5.46 84.66 0.46 0.77 16 17 N -0.93 -55.22 13.29 21.45 0.28 -54.94 16 18 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H 0.03 1.34 5.97 -2.39 -0.01 1.33 16 23 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 26 H 0.10 2.55 7.01 -2.39 -0.02 2.54 16 27 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 28 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 31 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.10 3.64 6.99 -2.39 -0.02 3.62 16 33 H 0.01 0.41 5.97 -2.39 -0.01 0.39 16 34 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 35 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -68.33 296.32 4.62 -63.71 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.07 Total: 15.14 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 4.68 Total: -24.18 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -3.16 Total: -98.81 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -68.33 4.62 -63.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057406708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.484 kcal (2) G-P(sol) polarization free energy of solvation -68.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds