Wall clock time and date at job start Mon Mar 30 2020 07:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46492 * 120.00331 * 2 1 4 4 C 1.53002 * 109.47599 * 270.00492 * 3 2 1 5 5 C 1.52997 * 109.47378 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46868 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00681 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99426 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00474 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99680 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46977 * 59.99904 * 10 8 6 12 12 H 1.48497 * 109.47307 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47175 * 300.00145 * 10 8 6 14 14 C 1.39709 * 119.99948 * 180.02562 * 2 1 3 15 15 C 1.39027 * 120.00164 * 180.02562 * 14 2 1 16 16 C 1.38205 * 120.23129 * 179.97438 * 15 14 2 17 17 C 1.38012 * 120.23604 * 0.02562 * 16 15 14 18 18 C 1.39633 * 119.99712 * 0.02562 * 17 16 15 19 19 C 1.43196 * 120.11885 * 179.97438 * 18 17 16 20 20 N 5.87475 * 84.50472 * 180.02562 * 2 1 3 21 21 C 1.38625 * 120.00117 * 359.97438 * 14 2 1 22 22 H 1.08999 * 109.46829 * 269.99902 * 1 2 3 23 23 H 1.08996 * 109.46897 * 29.99429 * 1 2 3 24 24 H 1.09000 * 109.47331 * 150.00030 * 1 2 3 25 25 H 1.09003 * 109.46704 * 30.00311 * 3 2 1 26 26 H 1.09000 * 109.47312 * 150.00309 * 3 2 1 27 27 H 1.09002 * 109.46813 * 300.00207 * 4 3 2 28 28 H 1.09000 * 109.46938 * 59.99588 * 4 3 2 29 29 H 1.09003 * 109.46965 * 299.99844 * 5 4 3 30 30 H 1.09000 * 109.47273 * 59.99977 * 5 4 3 31 31 H 0.97003 * 120.00020 * 179.97438 * 9 8 6 32 32 H 1.08003 * 119.88346 * 359.97438 * 15 14 2 33 33 H 1.08003 * 119.88138 * 179.97438 * 16 15 14 34 34 H 1.07998 * 120.00345 * 180.02562 * 17 16 15 35 35 H 1.08001 * 120.11648 * 0.29946 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2170 3.0357 -1.4424 6 6 3.4687 3.4705 -2.8632 7 1 3.1188 2.8622 -3.6842 8 6 4.1466 4.6444 -3.1150 9 7 4.5732 5.3849 -2.1155 10 14 4.4592 5.1830 -4.8762 11 1 3.1621 5.3602 -5.5772 12 1 5.2011 6.4693 -4.8762 13 1 5.2622 4.1479 -5.5753 14 6 2.1635 -1.2099 -0.0005 15 6 3.5538 -1.2100 0.0000 16 6 4.2496 -2.4041 0.0000 17 6 3.5693 -3.6049 -0.0011 18 6 2.1730 -3.6161 -0.0027 19 6 1.4645 -4.8605 -0.0044 20 7 0.9024 -5.8477 -0.0026 21 6 1.4704 -2.4105 -0.0005 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5137 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6085 2.0282 0.5139 26 1 3.1500 1.1382 0.5138 27 1 3.0415 0.9508 -1.9564 28 1 1.5001 1.8408 -1.9562 29 1 2.6276 3.7952 -0.9286 30 1 4.1695 2.9058 -0.9285 31 1 5.0505 6.2106 -2.2927 32 1 4.0920 -0.2736 0.0004 33 1 5.3296 -2.3975 0.0000 34 1 4.1168 -4.5358 -0.0006 35 1 0.3904 -2.4127 -0.0050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061559654.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:55 Heat of formation + Delta-G solvation = 33.870769 kcal Electronic energy + Delta-G solvation = -16309.846592 eV Core-core repulsion = 13692.946949 eV Total energy + Delta-G solvation = -2616.899643 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.59 seconds Orbital eigenvalues (eV) -40.71616 -38.23437 -37.06501 -35.58866 -33.49378 -32.24648 -30.79671 -29.11232 -26.75660 -25.06451 -24.12516 -22.37991 -21.75479 -19.52557 -18.39072 -17.60108 -16.82547 -16.55270 -16.29838 -15.56491 -15.34339 -15.07528 -14.89753 -14.77658 -14.25059 -14.12831 -13.73595 -13.65970 -13.20176 -13.07199 -12.88238 -12.68157 -12.58162 -12.47703 -12.32006 -11.93211 -11.47803 -11.35985 -11.27572 -10.66109 -10.51800 -9.85468 -8.23921 -8.12214 -6.27875 -0.09314 0.66364 1.42021 1.43704 1.51727 1.60009 2.02898 2.24231 2.43548 2.92612 3.04581 3.15716 3.97086 4.06330 4.26360 4.32150 4.37911 4.43481 4.57724 4.69220 4.76888 4.78146 4.86750 4.94400 5.04343 5.07506 5.26426 5.32234 5.45198 5.55396 5.61246 5.77272 5.85113 5.89547 6.25978 6.38056 6.45580 6.60121 6.88878 7.41193 8.93258 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.033527 B = 0.004179 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.944503 B = 6698.041126 C = 6949.403708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.632 5.632 3 C 0.131 3.869 4 C -0.109 4.109 5 C 0.028 3.972 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.207 3.793 15 C -0.177 4.177 16 C -0.069 4.069 17 C -0.127 4.127 18 C 0.004 3.996 19 C 0.285 3.715 20 N -0.466 5.466 21 C -0.156 4.156 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.045 0.955 29 H -0.005 1.005 30 H -0.002 1.002 31 H 0.263 0.737 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -13.426 5.763 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.341 5.341 3 C 0.008 3.992 4 C -0.148 4.148 5 C -0.010 4.010 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.193 1.193 14 C 0.104 3.896 15 C -0.200 4.200 16 C -0.087 4.087 17 C -0.150 4.150 18 C 0.000 4.000 19 C -0.030 4.030 20 N -0.142 5.142 21 C -0.182 4.182 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.172 0.828 34 H 0.165 0.835 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.723 -14.619 5.818 16.427 hybrid contribution 0.411 1.167 -0.883 1.520 sum -4.312 -13.451 4.935 14.963 Atomic orbital electron populations 1.21799 0.78474 1.03302 1.02015 1.46699 1.05776 1.02589 1.79043 1.21459 0.97126 0.84285 0.96336 1.21798 0.99291 0.97137 0.96549 1.18930 0.94358 0.92422 0.95303 1.21657 1.35892 1.06617 0.93962 0.92740 1.25888 0.95491 0.96759 1.01342 1.70062 1.39355 1.14735 1.32926 0.85605 0.78558 0.77578 0.79955 1.19431 1.20846 1.19308 1.17805 0.91587 0.85866 0.94347 1.21234 0.92445 1.00011 1.06329 1.21083 1.01178 0.90416 0.96065 1.21112 0.91238 0.99593 1.03059 1.15716 0.92708 0.85365 1.06239 1.25896 0.92264 0.92605 0.92211 1.81247 1.09912 1.12313 1.10704 1.20645 1.00279 0.89250 1.07998 0.92001 0.91332 0.90454 0.90443 0.90535 0.93531 0.93610 0.98619 0.98366 0.92777 0.85673 0.82812 0.83506 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.67 10.19 127.77 1.30 2.98 16 2 N -0.63 -15.71 3.01 -722.35 -2.17 -17.88 16 3 C 0.13 3.85 5.16 86.38 0.45 4.30 16 4 C -0.11 -4.11 5.48 30.59 0.17 -3.95 16 5 C 0.03 1.36 4.97 29.85 0.15 1.51 16 6 C -0.54 -30.04 9.11 25.60 0.23 -29.80 16 7 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 8 C 0.00 0.18 5.46 84.66 0.46 0.64 16 9 N -0.93 -55.03 13.29 21.45 0.28 -54.74 16 10 Si 0.96 43.35 29.54 68.60 2.03 45.37 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 14 C 0.21 4.93 6.55 38.17 0.25 5.18 16 15 C -0.18 -4.12 9.20 22.45 0.21 -3.92 16 16 C -0.07 -1.27 10.02 22.21 0.22 -1.04 16 17 C -0.13 -2.23 9.75 22.55 0.22 -2.01 16 18 C 0.00 0.08 5.73 -21.38 -0.12 -0.05 16 19 C 0.28 6.44 15.33 88.33 1.35 7.79 16 20 N -0.47 -12.49 18.54 19.00 0.35 -12.14 16 21 C -0.16 -3.28 8.91 22.68 0.20 -3.07 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.36 8.07 -2.39 -0.02 1.34 16 24 H 0.08 1.28 6.19 -2.39 -0.01 1.27 16 25 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 26 H 0.08 2.20 6.19 -2.39 -0.01 2.19 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.13 3.15 6.12 -2.91 -0.02 3.13 16 33 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.14 2.53 6.13 -2.91 -0.02 2.51 16 Total: -1.00 -63.84 305.20 6.66 -57.18 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 1.08 Total: 3.65 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 5.09 Total: -21.44 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -1.54 Total: -84.76 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -63.84 6.66 -57.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061559654.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.049 kcal (2) G-P(sol) polarization free energy of solvation -63.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.59 seconds