Wall clock time and date at job start Mon Mar 30 2020 07:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.52998 * 109.47058 * 270.00111 * 3 2 1 5 5 C 1.52995 * 109.47008 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.47229 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99660 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00061 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99964 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99910 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46992 * 60.00400 * 10 8 6 12 12 H 1.48501 * 109.47053 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47170 * 300.00550 * 10 8 6 14 14 C 1.39185 * 119.99958 * 179.97438 * 2 1 3 15 15 C 1.39179 * 119.92515 * 0.02562 * 14 2 1 16 16 C 1.37650 * 120.07100 * 179.97438 * 15 14 2 17 17 C 1.39799 * 119.92913 * 0.02562 * 16 15 14 18 18 C 1.43205 * 120.07701 * 179.97438 * 17 16 15 19 19 N 6.73122 * 120.00063 * 180.02562 * 2 1 3 20 20 C 1.39813 * 119.84996 * 0.27424 * 17 16 15 21 21 C 1.37655 * 119.92146 * 359.44481 * 20 17 16 22 22 H 1.09003 * 109.46925 * 269.99849 * 1 2 3 23 23 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 24 24 H 1.09003 * 109.47307 * 149.99910 * 1 2 3 25 25 H 1.08996 * 109.47153 * 29.99982 * 3 2 1 26 26 H 1.09002 * 109.47094 * 150.00008 * 3 2 1 27 27 H 1.09005 * 109.46783 * 299.99924 * 4 3 2 28 28 H 1.09002 * 109.47252 * 59.99994 * 4 3 2 29 29 H 1.09005 * 109.46952 * 299.99411 * 5 4 3 30 30 H 1.09002 * 109.47454 * 59.99708 * 5 4 3 31 31 H 0.96999 * 119.99964 * 179.97438 * 9 8 6 32 32 H 1.07994 * 119.96165 * 359.95647 * 15 14 2 33 33 H 1.08008 * 120.03484 * 179.97438 * 16 15 14 34 34 H 1.08001 * 120.04125 * 179.72493 * 20 17 16 35 35 H 1.07991 * 119.96081 * 180.27907 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2179 3.0351 -1.4425 6 6 3.4696 3.4699 -2.8633 7 1 3.1190 2.8619 -3.6842 8 6 4.1474 4.6439 -3.1153 9 7 4.5748 5.3840 -2.1156 10 14 4.4600 5.1824 -4.8764 11 1 3.1629 5.3596 -5.5775 12 1 5.2018 6.4688 -4.8764 13 1 5.2631 4.1472 -5.5754 14 6 2.1609 -1.2054 0.0005 15 6 1.4634 -2.4098 0.0005 16 6 2.1486 -3.6036 0.0005 17 6 3.5466 -3.6055 0.0011 18 6 4.2627 -4.8456 0.0016 19 7 4.8307 -5.8294 -0.0026 20 6 4.2441 -2.3938 0.0074 21 6 3.5527 -1.2035 0.0016 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5138 26 1 3.1499 1.1385 0.5138 27 1 3.0415 0.9508 -1.9563 28 1 1.5000 1.8408 -1.9563 29 1 2.6291 3.7950 -0.9285 30 1 4.1703 2.9045 -0.9287 31 1 5.0520 6.2096 -2.2928 32 1 0.3835 -2.4077 0.0008 33 1 1.6068 -4.5380 0.0010 34 1 5.3241 -2.3916 0.0124 35 1 4.0908 -0.2672 0.0019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061952433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:05 Heat of formation + Delta-G solvation = 46.906122 kcal Electronic energy + Delta-G solvation = -16277.552855 eV Core-core repulsion = 13661.218468 eV Total energy + Delta-G solvation = -2616.334388 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -39.80265 -37.23579 -35.83088 -33.82635 -31.88258 -31.05956 -30.05843 -27.66046 -25.76169 -23.75760 -22.30829 -21.44331 -20.22486 -18.82548 -17.09282 -16.38200 -15.76784 -14.89182 -14.73383 -14.41453 -14.05528 -13.93738 -13.76781 -13.63749 -13.27929 -12.59216 -12.42882 -12.31660 -12.12308 -11.97267 -11.89786 -11.43796 -10.97325 -10.89618 -10.76821 -10.58409 -9.92219 -9.79529 -9.42738 -9.16706 -9.05423 -8.40585 -7.25000 -6.05758 -4.08511 1.03538 1.41349 2.77283 3.06825 3.15373 3.30083 3.34845 3.37471 3.99041 4.08870 4.41783 4.76186 4.84122 5.07255 5.27263 5.30221 5.36531 5.41051 5.49385 5.59281 5.70471 5.82897 5.94288 6.01075 6.16268 6.21077 6.41838 6.46850 6.64181 6.72271 6.97374 7.29725 7.46750 7.57956 7.61662 7.70788 7.92742 8.35566 8.97907 9.56188 11.05290 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.004430 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.704338 B = 6319.321560 C = 6991.933510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.616 5.616 3 C 0.113 3.887 4 C -0.127 4.127 5 C 0.024 3.976 6 C -0.522 4.522 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.256 3.744 15 C -0.212 4.212 16 C -0.018 4.018 17 C -0.115 4.115 18 C 0.270 3.730 19 N -0.451 5.451 20 C -0.016 4.016 21 C -0.200 4.200 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.262 0.738 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.854 -11.871 6.235 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.321 5.321 3 C -0.009 4.009 4 C -0.165 4.165 5 C -0.014 4.014 6 C -0.560 4.560 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.148 3.852 15 C -0.235 4.235 16 C -0.040 4.040 17 C -0.122 4.122 18 C -0.043 4.043 19 N -0.128 5.128 20 C -0.037 4.037 21 C -0.222 4.222 22 H 0.068 0.932 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.018 -12.995 6.279 16.049 hybrid contribution -0.046 0.884 -1.037 1.363 sum -7.064 -12.111 5.242 14.968 Atomic orbital electron populations 1.21721 0.79670 1.03076 1.01162 1.46867 1.05349 1.03791 1.76070 1.21896 0.96536 0.82932 0.99524 1.22058 1.00699 1.00329 0.93433 1.19042 0.94926 0.90155 0.97269 1.21176 1.36064 1.06354 0.92419 0.92788 1.25009 0.95678 0.96608 0.97041 1.69942 1.38512 1.14283 1.30723 0.86664 0.78399 0.77902 0.85090 1.20260 1.21252 1.20186 1.18140 0.91482 0.86055 0.89491 1.20545 0.99882 0.90520 1.12571 1.20773 0.91734 0.97843 0.93636 1.15743 0.92154 0.86701 1.17560 1.25803 0.93118 0.92819 0.92590 1.81209 1.08875 1.11328 1.11378 1.20877 0.99658 0.90174 0.93015 1.20768 0.92210 0.98964 1.10257 0.93161 0.90896 0.91335 0.90764 0.90545 0.92821 0.93188 0.96583 0.96465 0.92886 0.85267 0.85636 0.85332 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.18 59.85 0.61 1.44 16 2 N -0.62 -7.64 2.99 -179.60 -0.54 -8.18 16 3 C 0.11 1.64 5.15 -4.04 -0.02 1.62 16 4 C -0.13 -2.34 5.48 -26.73 -0.15 -2.49 16 5 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 6 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 10 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.26 3.12 6.55 -83.82 -0.55 2.57 16 15 C -0.21 -2.18 9.18 -39.45 -0.36 -2.54 16 16 C -0.02 -0.18 9.74 -39.21 -0.38 -0.57 16 17 C -0.12 -1.31 5.74 -106.80 -0.61 -1.92 16 18 C 0.27 3.47 15.33 -22.47 -0.34 3.12 16 19 N -0.45 -6.72 18.54 41.83 0.78 -5.95 16 20 C -0.02 -0.18 9.75 -39.21 -0.38 -0.56 16 21 C -0.20 -2.48 9.18 -39.44 -0.36 -2.84 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 24 H 0.07 0.55 6.17 -51.93 -0.32 0.23 16 25 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 26 H 0.08 1.09 6.17 -51.93 -0.32 0.77 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.13 1.07 6.11 -52.49 -0.32 0.75 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.14 1.78 6.11 -52.49 -0.32 1.46 16 LS Contribution 305.09 15.07 4.60 4.60 Total: -1.00 -30.26 305.09 -7.17 -37.44 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -4.62 Total: -3.95 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -3.10 Total: -14.77 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.97 Total: -39.48 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.26 -7.17 -37.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061952433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.342 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds