Wall clock time and date at job start Mon Mar 30 2020 06:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47171 * 2 1 4 4 H 1.08997 * 109.47207 * 54.78375 * 3 2 1 5 5 C 1.50701 * 109.47323 * 174.78933 * 3 2 1 6 6 H 1.08003 * 120.00205 * 95.12311 * 5 3 2 7 7 C 1.37878 * 119.99909 * 275.12611 * 5 3 2 8 8 N 1.31519 * 119.99936 * 355.08937 * 7 5 3 9 9 Si 1.86799 * 120.00229 * 175.09465 * 7 5 3 10 10 H 1.48495 * 109.47197 * 59.99487 * 9 7 5 11 11 H 1.48497 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46884 * 299.99745 * 9 7 5 13 13 N 1.46507 * 109.46887 * 294.78594 * 3 2 1 14 14 C 1.46492 * 120.00066 * 305.52360 * 13 3 2 15 15 C 1.39712 * 119.99469 * 125.52556 * 13 3 2 16 16 C 1.39026 * 120.00504 * 5.96540 * 15 13 3 17 17 C 1.38208 * 120.23138 * 180.02562 * 16 15 13 18 18 C 1.38010 * 120.23575 * 359.97438 * 17 16 15 19 19 C 1.39637 * 119.99487 * 359.97438 * 18 17 16 20 20 C 1.43201 * 120.11469 * 179.97438 * 19 18 17 21 21 N 8.05066 * 70.83836 * 323.23066 * 2 1 3 22 22 C 1.38628 * 119.99459 * 185.69158 * 15 13 3 23 23 H 1.08997 * 109.47411 * 59.99847 * 1 2 3 24 24 H 1.08997 * 109.47271 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47127 * 299.99641 * 1 2 3 26 26 H 1.09000 * 109.47127 * 240.00359 * 2 1 3 27 27 H 1.08997 * 109.47411 * 120.00153 * 2 1 3 28 28 H 0.97008 * 119.99456 * 5.10661 * 8 7 5 29 29 H 1.09006 * 109.47247 * 90.00485 * 14 13 3 30 30 H 1.09005 * 109.46984 * 210.00186 * 14 13 3 31 31 H 1.08997 * 109.47471 * 330.00164 * 14 13 3 32 32 H 1.08003 * 119.88499 * 0.02562 * 16 15 13 33 33 H 1.07998 * 119.87764 * 180.02562 * 17 16 15 34 34 H 1.07998 * 120.00070 * 179.97438 * 18 17 16 35 35 H 1.08002 * 120.11794 * 359.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9826 0.8396 5 6 3.5414 1.4445 0.1290 6 1 4.1594 1.5005 -0.7550 7 6 4.1263 1.3748 1.3757 8 7 3.3770 1.4040 2.4561 9 14 5.9830 1.2390 1.5301 10 1 6.6200 2.4235 0.9007 11 1 6.3573 1.1806 2.9659 12 1 6.4476 0.0053 0.8464 13 7 1.6568 2.0959 -1.2541 14 6 2.0202 1.4892 -2.5369 15 6 0.9448 3.2976 -1.2263 16 6 0.7075 3.9373 -0.0150 17 6 0.0032 5.1261 0.0179 18 6 -0.4690 5.6867 -1.1514 19 6 -0.2353 5.0530 -2.3735 20 6 -0.7245 5.6321 -3.5884 21 7 -1.1125 6.0917 -4.5521 22 6 0.4798 3.8551 -2.4073 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.4102 1.3998 2.3761 29 1 1.2261 0.8149 -2.8580 30 1 2.1562 2.2718 -3.2834 31 1 2.9487 0.9294 -2.4242 32 1 1.0748 3.5039 0.9035 33 1 -0.1775 5.6184 0.9621 34 1 -1.0192 6.6155 -1.1212 35 1 0.6672 3.3623 -3.3499 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061952489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:50 Heat of formation + Delta-G solvation = 52.471576 kcal Electronic energy + Delta-G solvation = -17242.001249 eV Core-core repulsion = 14625.908197 eV Total energy + Delta-G solvation = -2616.093052 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.41365 -37.08103 -35.91021 -33.37539 -31.70675 -31.02295 -29.32288 -27.25254 -25.27693 -23.55844 -22.98502 -21.21750 -20.04972 -18.27377 -17.01042 -16.08035 -15.28902 -15.20620 -14.30523 -14.02447 -13.85131 -13.67998 -13.55670 -13.01834 -12.89098 -12.66494 -12.42580 -12.25266 -11.88368 -11.60522 -11.48850 -11.16036 -10.94887 -10.81579 -10.59212 -10.35954 -10.20619 -9.90483 -9.57184 -8.71151 -8.61270 -8.48791 -6.69982 -6.44545 -4.28698 1.15874 1.92500 2.80624 3.26915 3.34640 3.35853 3.54301 3.84530 4.18915 4.29701 4.39707 5.17141 5.19859 5.39073 5.60561 5.66275 5.80990 5.83406 5.87247 5.99265 6.05245 6.08481 6.09579 6.27485 6.49943 6.58270 6.58794 6.65913 6.80454 6.83515 7.00241 7.10648 7.15561 7.62838 7.83872 7.94946 8.20199 8.40686 8.65567 9.41615 10.82403 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.006471 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.857743 B = 4326.234725 C = 4519.018669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.252 3.748 4 H 0.057 0.943 5 C -0.605 4.605 6 H 0.054 0.946 7 C 0.028 3.972 8 N -0.904 5.904 9 Si 1.067 2.933 10 H -0.288 1.288 11 H -0.281 1.281 12 H -0.287 1.287 13 N -0.598 5.598 14 C 0.096 3.904 15 C 0.237 3.763 16 C -0.165 4.165 17 C -0.073 4.073 18 C -0.152 4.152 19 C 0.007 3.993 20 C 0.269 3.731 21 N -0.442 5.442 22 C -0.172 4.172 23 H 0.046 0.954 24 H 0.037 0.963 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.269 0.731 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.758 1.658 -4.053 6.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.152 3.848 4 H 0.074 0.926 5 C -0.644 4.644 6 H 0.072 0.928 7 C -0.178 4.178 8 N -0.540 5.540 9 Si 0.894 3.106 10 H -0.214 1.214 11 H -0.207 1.207 12 H -0.214 1.214 13 N -0.302 5.302 14 C -0.048 4.048 15 C 0.129 3.871 16 C -0.189 4.189 17 C -0.092 4.092 18 C -0.175 4.175 19 C 0.003 3.997 20 C -0.045 4.045 21 N -0.118 5.118 22 C -0.199 4.199 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.979 2.080 -4.440 6.314 hybrid contribution -0.998 -0.225 -0.831 1.318 sum -4.977 1.855 -5.270 7.482 Atomic orbital electron populations 1.21812 0.98053 0.99763 1.00950 1.22015 0.93076 1.00028 1.01343 1.19143 0.95400 0.88713 0.81587 0.92557 1.22163 0.90845 1.55911 0.95457 0.92806 1.25782 1.07026 0.93119 0.91837 1.70854 1.07067 1.45703 1.30360 0.83561 0.74129 0.76628 0.76235 1.21417 1.20660 1.21363 1.47193 1.55444 1.20382 1.07156 1.21484 1.00258 0.97537 0.85506 1.17763 0.89768 0.86705 0.92866 1.21145 1.03167 0.96839 0.97704 1.20754 0.96191 0.94774 0.97515 1.20675 1.04962 1.00995 0.90868 1.15649 1.01497 0.95580 0.86936 1.25953 0.92887 0.92835 0.92848 1.81179 1.10049 1.09513 1.11078 1.20510 1.04633 0.97082 0.97628 0.93517 0.94353 0.93547 0.93272 0.91712 0.91960 0.94505 0.92832 0.90812 0.84783 0.85710 0.86291 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.80 37.16 0.36 -2.18 16 2 C -0.13 -2.50 5.27 -26.73 -0.14 -2.64 16 3 C 0.25 5.45 1.65 -69.08 -0.11 5.33 16 4 H 0.06 1.30 3.92 -51.93 -0.20 1.10 16 5 C -0.61 -14.98 8.17 -34.44 -0.28 -15.26 16 6 H 0.05 1.36 7.04 -52.48 -0.37 0.99 16 7 C 0.03 0.72 5.45 -17.82 -0.10 0.62 16 8 N -0.90 -24.49 13.63 55.43 0.76 -23.74 16 9 Si 1.07 23.30 29.91 -169.99 -5.08 18.22 16 10 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.60 -11.29 2.35 -173.36 -0.41 -11.69 16 14 C 0.10 1.56 8.77 59.84 0.53 2.09 16 15 C 0.24 4.18 6.53 -83.83 -0.55 3.64 16 16 C -0.17 -2.85 9.26 -39.30 -0.36 -3.21 16 17 C -0.07 -1.05 10.02 -39.68 -0.40 -1.44 16 18 C -0.15 -2.06 9.75 -39.14 -0.38 -2.44 16 19 C 0.01 0.11 5.73 -106.96 -0.61 -0.50 16 20 C 0.27 4.06 15.33 -22.47 -0.34 3.71 16 21 N -0.44 -7.28 18.54 41.84 0.78 -6.50 16 22 C -0.17 -2.69 8.87 -38.95 -0.35 -3.04 16 23 H 0.05 0.78 7.76 -51.93 -0.40 0.38 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.95 7.34 -51.93 -0.38 0.57 16 27 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.27 7.14 6.65 -40.82 -0.27 6.87 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.78 6.45 -51.93 -0.33 0.44 16 31 H 0.07 1.27 7.01 -51.93 -0.36 0.91 16 32 H 0.13 2.56 5.83 -52.48 -0.31 2.26 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.12 1.78 6.30 -52.49 -0.33 1.45 16 LS Contribution 297.32 15.07 4.48 4.48 Total: -1.00 -26.65 297.32 -6.51 -33.16 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.30 Total: 1.40 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -2.74 Total: -15.33 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 1.12 Total: -41.93 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.08 Total: 18.22 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.65 -6.51 -33.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061952489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.636 kcal (2) G-P(sol) polarization free energy of solvation -26.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds