Wall clock time and date at job start Mon Mar 30 2020 06:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47171 * 2 1 4 4 H 1.08997 * 109.47207 * 54.78375 * 3 2 1 5 5 C 1.50701 * 109.47323 * 174.78933 * 3 2 1 6 6 H 1.08003 * 120.00205 * 95.12311 * 5 3 2 7 7 C 1.37878 * 119.99909 * 275.12611 * 5 3 2 8 8 N 1.31519 * 119.99936 * 355.08937 * 7 5 3 9 9 Si 1.86799 * 120.00229 * 175.09465 * 7 5 3 10 10 H 1.48495 * 109.47197 * 59.99487 * 9 7 5 11 11 H 1.48497 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46884 * 299.99745 * 9 7 5 13 13 N 1.46507 * 109.46887 * 294.78594 * 3 2 1 14 14 C 1.46492 * 120.00066 * 305.52360 * 13 3 2 15 15 C 1.39712 * 119.99469 * 125.52556 * 13 3 2 16 16 C 1.39026 * 120.00504 * 5.96540 * 15 13 3 17 17 C 1.38208 * 120.23138 * 180.02562 * 16 15 13 18 18 C 1.38010 * 120.23575 * 359.97438 * 17 16 15 19 19 C 1.39637 * 119.99487 * 359.97438 * 18 17 16 20 20 C 1.43201 * 120.11469 * 179.97438 * 19 18 17 21 21 N 8.05066 * 70.83836 * 323.23066 * 2 1 3 22 22 C 1.38628 * 119.99459 * 185.69158 * 15 13 3 23 23 H 1.08997 * 109.47411 * 59.99847 * 1 2 3 24 24 H 1.08997 * 109.47271 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47127 * 299.99641 * 1 2 3 26 26 H 1.09000 * 109.47127 * 240.00359 * 2 1 3 27 27 H 1.08997 * 109.47411 * 120.00153 * 2 1 3 28 28 H 0.97008 * 119.99456 * 5.10661 * 8 7 5 29 29 H 1.09006 * 109.47247 * 90.00485 * 14 13 3 30 30 H 1.09005 * 109.46984 * 210.00186 * 14 13 3 31 31 H 1.08997 * 109.47471 * 330.00164 * 14 13 3 32 32 H 1.08003 * 119.88499 * 0.02562 * 16 15 13 33 33 H 1.07998 * 119.87764 * 180.02562 * 17 16 15 34 34 H 1.07998 * 120.00070 * 179.97438 * 18 17 16 35 35 H 1.08002 * 120.11794 * 359.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9826 0.8396 5 6 3.5414 1.4445 0.1290 6 1 4.1594 1.5005 -0.7550 7 6 4.1263 1.3748 1.3757 8 7 3.3770 1.4040 2.4561 9 14 5.9830 1.2390 1.5301 10 1 6.6200 2.4235 0.9007 11 1 6.3573 1.1806 2.9659 12 1 6.4476 0.0053 0.8464 13 7 1.6568 2.0959 -1.2541 14 6 2.0202 1.4892 -2.5369 15 6 0.9448 3.2976 -1.2263 16 6 0.7075 3.9373 -0.0150 17 6 0.0032 5.1261 0.0179 18 6 -0.4690 5.6867 -1.1514 19 6 -0.2353 5.0530 -2.3735 20 6 -0.7245 5.6321 -3.5884 21 7 -1.1125 6.0917 -4.5521 22 6 0.4798 3.8551 -2.4073 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.4102 1.3998 2.3761 29 1 1.2261 0.8149 -2.8580 30 1 2.1562 2.2718 -3.2834 31 1 2.9487 0.9294 -2.4242 32 1 1.0748 3.5039 0.9035 33 1 -0.1775 5.6184 0.9621 34 1 -1.0192 6.6155 -1.1212 35 1 0.6672 3.3623 -3.3499 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061952489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:50 Heat of formation + Delta-G solvation = 40.504276 kcal Electronic energy + Delta-G solvation = -17242.520190 eV Core-core repulsion = 14625.908197 eV Total energy + Delta-G solvation = -2616.611993 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.71346 -38.48296 -37.23014 -35.02547 -33.34775 -32.26573 -30.61494 -28.81833 -26.79944 -25.05224 -24.45909 -22.51635 -21.56575 -19.67432 -18.74155 -17.45374 -16.67009 -16.48286 -15.79575 -15.61910 -15.33732 -14.95572 -14.77162 -14.47592 -14.30825 -14.03108 -13.92033 -13.65561 -13.13826 -13.09573 -12.86932 -12.72530 -12.49400 -12.26643 -11.98629 -11.96145 -11.88615 -11.45583 -11.07664 -10.46617 -10.29155 -9.83865 -8.59726 -7.94889 -6.28956 -0.07477 0.72306 1.56845 1.59752 1.61566 1.80798 2.04245 2.45805 2.60417 2.94325 3.07386 3.24835 4.01259 4.17980 4.32209 4.37332 4.38564 4.42738 4.57293 4.63186 4.72323 4.79213 4.82786 4.98854 5.00242 5.13335 5.21180 5.30173 5.40938 5.45837 5.53397 5.65833 5.88166 6.03967 6.13735 6.43180 6.61386 6.70319 6.89486 7.48148 8.82073 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.006471 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.857743 B = 4326.234725 C = 4519.018669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.257 3.743 4 H 0.039 0.961 5 C -0.608 4.608 6 H 0.044 0.956 7 C -0.018 4.018 8 N -0.932 5.932 9 Si 1.105 2.895 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.611 5.611 14 C 0.097 3.903 15 C 0.215 3.785 16 C -0.185 4.185 17 C -0.066 4.066 18 C -0.134 4.134 19 C 0.008 3.992 20 C 0.288 3.712 21 N -0.464 5.464 22 C -0.166 4.166 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.261 0.739 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 2.572 -5.197 8.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.155 3.845 4 H 0.056 0.944 5 C -0.647 4.647 6 H 0.062 0.938 7 C -0.217 4.217 8 N -0.570 5.570 9 Si 0.929 3.071 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.317 5.317 14 C -0.046 4.046 15 C 0.109 3.891 16 C -0.208 4.208 17 C -0.085 4.085 18 C -0.157 4.157 19 C 0.004 3.996 20 C -0.027 4.027 21 N -0.140 5.140 22 C -0.192 4.192 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.801 3.012 -5.617 7.980 hybrid contribution -0.817 -0.418 -0.517 1.053 sum -5.618 2.594 -6.134 8.713 Atomic orbital electron populations 1.21673 0.95623 1.01076 1.00941 1.21839 0.95183 0.98636 1.00100 1.18847 0.93496 0.89548 0.82605 0.94376 1.22481 0.92857 1.54547 0.94830 0.93776 1.26865 1.10012 0.92899 0.91968 1.70936 1.06774 1.48209 1.31038 0.83049 0.70649 0.77435 0.75972 1.20511 1.21228 1.19842 1.46969 1.56773 1.21219 1.06759 1.21550 1.00031 0.98177 0.84866 1.17924 0.90784 0.86647 0.93719 1.21127 1.04655 0.98334 0.96720 1.21005 0.94847 0.93504 0.99134 1.21017 1.03405 1.01422 0.89836 1.15682 1.01331 0.95317 0.87252 1.25815 0.92220 0.92202 0.92445 1.81215 1.10830 1.10288 1.11642 1.20570 1.04071 0.97234 0.97293 0.92905 0.92310 0.94091 0.92919 0.94401 0.92846 0.92865 0.91079 0.92424 0.87567 0.83117 0.83167 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.80 71.98 0.71 -3.85 16 2 C -0.12 -4.79 5.27 30.59 0.16 -4.63 16 3 C 0.26 11.37 1.65 44.24 0.07 11.44 16 4 H 0.04 1.85 3.92 -2.39 -0.01 1.84 16 5 C -0.61 -30.79 8.17 25.60 0.21 -30.58 16 6 H 0.04 2.27 7.04 -2.91 -0.02 2.24 16 7 C -0.02 -0.92 5.45 84.65 0.46 -0.46 16 8 N -0.93 -52.08 13.63 21.45 0.29 -51.79 16 9 Si 1.11 47.47 29.91 68.60 2.05 49.52 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 13 N -0.61 -22.96 2.35 -702.40 -1.65 -24.61 16 14 C 0.10 3.06 8.77 127.77 1.12 4.18 16 15 C 0.22 7.42 6.53 38.17 0.25 7.67 16 16 C -0.18 -6.32 9.26 22.45 0.21 -6.11 16 17 C -0.07 -1.74 10.02 22.21 0.22 -1.52 16 18 C -0.13 -3.16 9.75 22.55 0.22 -2.94 16 19 C 0.01 0.22 5.73 -21.38 -0.12 0.09 16 20 C 0.29 7.82 15.33 88.33 1.35 9.17 16 21 N -0.46 -14.10 18.54 19.00 0.35 -13.75 16 22 C -0.17 -4.82 8.87 22.68 0.20 -4.62 16 23 H 0.05 1.70 7.76 -2.39 -0.02 1.68 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 2.04 7.34 -2.39 -0.02 2.03 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.26 14.50 6.65 -92.70 -0.62 13.89 16 29 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.07 1.95 6.45 -2.38 -0.02 1.94 16 31 H 0.06 1.98 7.01 -2.39 -0.02 1.96 16 32 H 0.11 4.24 5.83 -2.91 -0.02 4.23 16 33 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.14 3.56 6.30 -2.91 -0.02 3.54 16 Total: -1.00 -57.65 297.32 7.36 -50.29 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.25 Total: 12.49 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 5.06 Total: -22.15 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -1.01 Total: -90.16 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.05 Total: 49.52 kcal Total: -57.65 7.36 -50.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061952489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.797 kcal (2) G-P(sol) polarization free energy of solvation -57.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds