Wall clock time and date at job start Mon Mar 30 2020 07:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00102 * 2 1 4 4 H 1.48502 * 109.47023 * 264.94728 * 3 2 1 5 5 H 1.48499 * 109.47259 * 24.94605 * 3 2 1 6 6 H 1.48498 * 109.47344 * 144.94757 * 3 2 1 7 7 C 1.37876 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99910 * 353.30046 * 7 2 1 9 9 C 1.50694 * 120.00573 * 173.30381 * 7 2 1 10 10 H 1.09008 * 108.78377 * 355.98813 * 9 7 2 11 11 C 1.54070 * 108.72873 * 114.33714 * 9 7 2 12 12 C 1.50472 * 112.49817 * 162.51769 * 11 9 7 13 13 C 1.54242 * 108.51725 * 265.84782 * 12 11 9 14 14 C 1.45544 * 112.40441 * 79.99838 * 13 12 11 15 15 C 1.54372 * 112.33283 * 298.02707 * 14 13 12 16 16 C 1.50476 * 108.45630 * 80.10253 * 15 14 13 17 17 H 1.08997 * 108.87860 * 26.45865 * 16 15 14 18 18 C 1.50698 * 108.87610 * 145.00394 * 16 15 14 19 19 C 1.38238 * 120.00399 * 43.12181 * 18 16 15 20 20 C 1.38231 * 120.00159 * 180.02562 * 19 18 16 21 21 C 1.38237 * 120.00189 * 359.95617 * 20 19 18 22 22 C 1.38238 * 119.99679 * 0.27444 * 21 20 19 23 23 C 1.38238 * 119.99711 * 223.14310 * 18 16 15 24 24 H 0.97001 * 119.99759 * 0.02562 * 1 2 3 25 25 H 1.09000 * 108.87925 * 283.30042 * 11 9 7 26 26 H 1.09003 * 108.87537 * 41.74185 * 11 9 7 27 27 H 1.08993 * 109.62849 * 25.56147 * 12 11 9 28 28 H 1.09001 * 109.62771 * 145.94559 * 12 11 9 29 29 H 1.09004 * 108.89027 * 200.74653 * 13 12 11 30 30 H 1.08994 * 108.89562 * 319.33487 * 13 12 11 31 31 H 1.08993 * 108.90196 * 58.81090 * 14 13 12 32 32 H 1.08996 * 108.89487 * 177.40683 * 14 13 12 33 33 H 1.08994 * 109.72242 * 320.37668 * 15 14 13 34 34 H 1.08999 * 109.60528 * 199.75462 * 15 14 13 35 35 H 1.08000 * 119.99737 * 359.97438 * 19 18 16 36 36 H 1.07997 * 120.00116 * 179.97438 * 20 19 18 37 37 H 1.07991 * 120.00247 * 180.02562 * 21 20 19 38 38 H 1.08001 * 120.00075 * 179.72686 * 22 21 20 39 39 H 1.08001 * 120.00260 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6035 1.9847 -1.3947 5 1 1.3973 2.6811 0.5905 6 1 3.4892 1.4733 0.8041 7 6 2.0046 -1.1940 0.0005 8 1 1.4702 -2.1261 0.1101 9 6 3.5038 -1.1986 -0.1516 10 1 3.8428 -0.1762 -0.3193 11 6 4.1320 -1.7223 1.1541 12 6 5.5602 -2.1594 0.9711 13 6 5.5762 -3.6762 0.6917 14 6 5.2553 -3.9886 -0.6931 15 6 3.8347 -3.5281 -1.0843 16 6 3.8762 -2.0530 -1.3784 17 1 4.8823 -1.7860 -1.7019 18 6 2.9096 -1.7510 -2.4944 19 6 1.6552 -2.3317 -2.4986 20 6 0.7688 -2.0551 -3.5225 21 6 1.1364 -1.1969 -4.5420 22 6 2.3926 -0.6199 -4.5404 23 6 3.2776 -0.8934 -3.5143 24 1 -0.4850 0.8401 -0.0004 25 1 4.0985 -0.9315 1.9035 26 1 3.5469 -2.5696 1.5119 27 1 6.0009 -1.6271 0.1283 28 1 6.1276 -1.9450 1.8768 29 1 6.5676 -4.0669 0.9211 30 1 4.8471 -4.1623 1.3399 31 1 5.9786 -3.4961 -1.3429 32 1 5.3280 -5.0665 -0.8378 33 1 3.1467 -3.7180 -0.2606 34 1 3.5063 -4.0692 -1.9717 35 1 1.3680 -3.0023 -1.7021 36 1 -0.2111 -2.5092 -3.5260 37 1 0.4438 -0.9805 -5.3418 38 1 2.6815 0.0472 -5.3392 39 1 4.2576 -0.4396 -3.5111 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062571115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:52 Heat of formation + Delta-G solvation = 0.974648 kcal Electronic energy + Delta-G solvation = -18512.293211 eV Core-core repulsion = 15997.507428 eV Total energy + Delta-G solvation = -2514.785783 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.31026 -37.37141 -33.50761 -32.26109 -31.20498 -30.01542 -28.65858 -25.97614 -23.92887 -22.63376 -21.46440 -20.69477 -19.88336 -17.98014 -16.87212 -16.03322 -15.07882 -14.45959 -14.23666 -14.10522 -13.80829 -13.21203 -12.92452 -12.52673 -12.42479 -12.34572 -12.14658 -11.76116 -11.34551 -11.21506 -10.84471 -10.73879 -10.65976 -10.26072 -10.12602 -9.93955 -9.78712 -9.61904 -9.39841 -9.14725 -8.77616 -8.44869 -7.94176 -7.62009 -6.00989 -3.94247 2.31214 2.36921 3.34672 3.41293 3.42875 4.49223 4.72936 5.16804 5.25232 5.30095 5.53516 5.63195 5.69588 5.80723 5.90488 5.93333 6.01343 6.08581 6.18033 6.21657 6.30920 6.38910 6.50787 6.52545 6.55757 6.68400 6.70982 6.78282 6.91722 6.92285 6.98843 7.01170 7.07743 7.30397 7.33735 7.42767 7.53029 7.70228 7.87885 7.96963 8.57720 9.01821 9.64306 11.11995 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.012532 C = 0.008821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.802629 B = 2233.770490 C = 3173.423828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.079 3.921 3 Si 0.866 3.134 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.497 4.497 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.028 0.972 11 C -0.108 4.108 12 C -0.120 4.120 13 C -0.113 4.113 14 C -0.114 4.114 15 C -0.104 4.104 16 C -0.038 4.038 17 H 0.048 0.952 18 C -0.034 4.034 19 C -0.055 4.055 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.135 4.135 24 H 0.260 0.740 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 -5.073 -3.996 10.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.123 4.123 3 Si 0.694 3.306 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.535 4.535 8 H 0.093 0.907 9 C 0.003 3.997 10 H 0.047 0.953 11 C -0.146 4.146 12 C -0.158 4.158 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.141 4.141 16 C -0.057 4.057 17 H 0.066 0.934 18 C -0.035 4.035 19 C -0.073 4.073 20 C -0.145 4.145 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.153 4.153 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.795 -4.949 -3.988 10.058 hybrid contribution 0.243 1.293 0.045 1.316 sum 8.038 -3.656 -3.943 9.671 Atomic orbital electron populations 1.69886 1.06128 1.26585 1.50714 1.24948 0.94506 0.98369 0.94484 0.87015 0.80148 0.84625 0.78799 1.20130 1.22024 1.19403 1.20897 0.89143 0.94307 1.49115 0.90738 1.19574 0.96939 0.94002 0.89151 0.95349 1.21520 0.93059 1.00385 0.99617 1.21450 0.98848 0.95171 1.00281 1.20457 1.00206 0.96914 0.97432 1.20496 0.97859 0.99810 0.97020 1.21410 0.95889 0.95636 1.01155 1.20145 0.95102 0.95367 0.95072 0.93366 1.19760 0.95332 0.94879 0.93481 1.20895 0.92348 0.98731 0.95289 1.20985 0.99018 0.99376 0.95098 1.20841 0.96293 0.99293 0.99213 1.20812 0.94716 1.01076 0.98957 1.20884 0.99278 0.99749 0.95432 0.92971 0.93798 0.92459 0.92443 0.93425 0.93660 0.92369 0.92837 0.93294 0.90875 0.92784 0.86155 0.87389 0.87726 0.87735 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 21.83 26.90 -169.99 -4.57 17.25 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.27 -6.53 6.85 56.52 0.39 -6.14 16 7 C -0.50 -12.83 5.62 -34.44 -0.19 -13.02 16 8 H 0.07 2.07 6.85 -52.49 -0.36 1.71 16 9 C 0.02 0.49 1.88 -90.66 -0.17 0.32 16 10 H 0.03 0.67 4.79 -51.92 -0.25 0.42 16 11 C -0.11 -2.12 4.67 -27.43 -0.13 -2.25 16 12 C -0.12 -1.94 5.61 -27.34 -0.15 -2.09 16 13 C -0.11 -1.62 5.26 -29.60 -0.16 -1.78 16 14 C -0.11 -1.66 5.27 -29.53 -0.16 -1.82 16 15 C -0.10 -1.77 4.12 -27.27 -0.11 -1.88 16 16 C -0.04 -0.74 1.71 -92.48 -0.16 -0.90 16 17 H 0.05 0.88 6.43 -51.93 -0.33 0.55 16 18 C -0.03 -0.71 4.11 -104.62 -0.43 -1.14 16 19 C -0.05 -1.16 7.05 -39.58 -0.28 -1.44 16 20 C -0.13 -2.53 10.05 -39.58 -0.40 -2.93 16 21 C -0.14 -2.59 10.05 -39.58 -0.40 -2.99 16 22 C -0.14 -2.57 10.05 -39.58 -0.40 -2.96 16 23 C -0.14 -2.67 9.66 -39.58 -0.38 -3.06 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.06 1.14 6.45 -51.93 -0.34 0.80 16 27 H 0.06 0.93 6.97 -51.93 -0.36 0.57 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.85 7.47 -51.93 -0.39 0.46 16 31 H 0.05 0.76 7.47 -51.93 -0.39 0.37 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.35 6.60 -51.93 -0.34 1.01 16 34 H 0.05 0.89 7.33 -51.93 -0.38 0.51 16 35 H 0.12 2.61 6.32 -52.49 -0.33 2.28 16 36 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.10 1.88 8.01 -52.49 -0.42 1.46 16 LS Contribution 292.23 15.07 4.40 4.40 Total: -1.00 -28.31 292.23 -9.00 -37.32 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.00 Total: 2.61 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: -3.61 Total: -35.84 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.77 Total: -25.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.57 Total: 17.25 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.31 -9.00 -37.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.292 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds