Wall clock time and date at job start Mon Mar 30 2020 07:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00102 * 2 1 4 4 H 1.48502 * 109.47023 * 264.94728 * 3 2 1 5 5 H 1.48499 * 109.47259 * 24.94605 * 3 2 1 6 6 H 1.48498 * 109.47344 * 144.94757 * 3 2 1 7 7 C 1.37876 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99910 * 353.30046 * 7 2 1 9 9 C 1.50694 * 120.00573 * 173.30381 * 7 2 1 10 10 H 1.09008 * 108.78377 * 355.98813 * 9 7 2 11 11 C 1.54070 * 108.72873 * 114.33714 * 9 7 2 12 12 C 1.50472 * 112.49817 * 162.51769 * 11 9 7 13 13 C 1.54242 * 108.51725 * 265.84782 * 12 11 9 14 14 C 1.45544 * 112.40441 * 79.99838 * 13 12 11 15 15 C 1.54372 * 112.33283 * 298.02707 * 14 13 12 16 16 C 1.50476 * 108.45630 * 80.10253 * 15 14 13 17 17 H 1.08997 * 108.87860 * 26.45865 * 16 15 14 18 18 C 1.50698 * 108.87610 * 145.00394 * 16 15 14 19 19 C 1.38238 * 120.00399 * 43.12181 * 18 16 15 20 20 C 1.38231 * 120.00159 * 180.02562 * 19 18 16 21 21 C 1.38237 * 120.00189 * 359.95617 * 20 19 18 22 22 C 1.38238 * 119.99679 * 0.27444 * 21 20 19 23 23 C 1.38238 * 119.99711 * 223.14310 * 18 16 15 24 24 H 0.97001 * 119.99759 * 0.02562 * 1 2 3 25 25 H 1.09000 * 108.87925 * 283.30042 * 11 9 7 26 26 H 1.09003 * 108.87537 * 41.74185 * 11 9 7 27 27 H 1.08993 * 109.62849 * 25.56147 * 12 11 9 28 28 H 1.09001 * 109.62771 * 145.94559 * 12 11 9 29 29 H 1.09004 * 108.89027 * 200.74653 * 13 12 11 30 30 H 1.08994 * 108.89562 * 319.33487 * 13 12 11 31 31 H 1.08993 * 108.90196 * 58.81090 * 14 13 12 32 32 H 1.08996 * 108.89487 * 177.40683 * 14 13 12 33 33 H 1.08994 * 109.72242 * 320.37668 * 15 14 13 34 34 H 1.08999 * 109.60528 * 199.75462 * 15 14 13 35 35 H 1.08000 * 119.99737 * 359.97438 * 19 18 16 36 36 H 1.07997 * 120.00116 * 179.97438 * 20 19 18 37 37 H 1.07991 * 120.00247 * 180.02562 * 21 20 19 38 38 H 1.08001 * 120.00075 * 179.72686 * 22 21 20 39 39 H 1.08001 * 120.00260 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6035 1.9847 -1.3947 5 1 1.3973 2.6811 0.5905 6 1 3.4892 1.4733 0.8041 7 6 2.0046 -1.1940 0.0005 8 1 1.4702 -2.1261 0.1101 9 6 3.5038 -1.1986 -0.1516 10 1 3.8428 -0.1762 -0.3193 11 6 4.1320 -1.7223 1.1541 12 6 5.5602 -2.1594 0.9711 13 6 5.5762 -3.6762 0.6917 14 6 5.2553 -3.9886 -0.6931 15 6 3.8347 -3.5281 -1.0843 16 6 3.8762 -2.0530 -1.3784 17 1 4.8823 -1.7860 -1.7019 18 6 2.9096 -1.7510 -2.4944 19 6 1.6552 -2.3317 -2.4986 20 6 0.7688 -2.0551 -3.5225 21 6 1.1364 -1.1969 -4.5420 22 6 2.3926 -0.6199 -4.5404 23 6 3.2776 -0.8934 -3.5143 24 1 -0.4850 0.8401 -0.0004 25 1 4.0985 -0.9315 1.9035 26 1 3.5469 -2.5696 1.5119 27 1 6.0009 -1.6271 0.1283 28 1 6.1276 -1.9450 1.8768 29 1 6.5676 -4.0669 0.9211 30 1 4.8471 -4.1623 1.3399 31 1 5.9786 -3.4961 -1.3429 32 1 5.3280 -5.0665 -0.8378 33 1 3.1467 -3.7180 -0.2606 34 1 3.5063 -4.0692 -1.9717 35 1 1.3680 -3.0023 -1.7021 36 1 -0.2111 -2.5092 -3.5260 37 1 0.4438 -0.9805 -5.3418 38 1 2.6815 0.0472 -5.3392 39 1 4.2576 -0.4396 -3.5111 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062571115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:51 Heat of formation + Delta-G solvation = -12.227062 kcal Electronic energy + Delta-G solvation = -18512.865680 eV Core-core repulsion = 15997.507428 eV Total energy + Delta-G solvation = -2515.358252 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.82555 -38.81088 -35.20130 -33.89864 -32.89683 -31.55736 -30.16476 -27.73535 -25.39467 -24.25059 -23.06809 -22.22104 -21.17370 -19.63164 -18.82670 -17.57446 -16.58334 -16.03208 -15.84101 -15.72632 -15.27501 -14.84654 -14.46312 -14.21806 -13.99745 -13.76577 -13.70709 -13.28868 -12.97702 -12.78367 -12.68648 -12.37234 -12.18405 -11.84136 -11.58320 -11.38427 -11.36343 -11.21861 -10.84584 -10.79085 -10.62500 -10.48940 -9.51739 -9.18021 -8.15735 -6.08411 0.75854 0.82395 1.32655 1.34609 1.41010 2.40856 3.14896 3.25145 3.90413 3.99435 4.12247 4.22709 4.31764 4.39550 4.46375 4.54039 4.57666 4.68761 4.73452 4.81802 4.90272 4.93105 4.98197 5.11549 5.21640 5.28405 5.37109 5.44385 5.45504 5.48015 5.50221 5.59814 5.65107 5.69377 5.77651 5.83574 5.89167 5.91776 6.14781 6.43303 6.47918 6.90704 7.50800 9.00490 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.012532 C = 0.008821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.802629 B = 2233.770490 C = 3173.423828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.025 3.975 3 Si 0.912 3.088 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.253 1.253 7 C -0.471 4.471 8 H 0.041 0.959 9 C 0.019 3.981 10 H 0.017 0.983 11 C -0.103 4.103 12 C -0.116 4.116 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.100 4.100 16 C -0.032 4.032 17 H 0.067 0.933 18 C -0.053 4.053 19 C -0.076 4.076 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.148 4.148 24 H 0.256 0.744 25 H 0.030 0.970 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.717 -5.027 -4.996 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.172 4.172 3 Si 0.740 3.260 4 H -0.200 1.200 5 H -0.227 1.227 6 H -0.177 1.177 7 C -0.509 4.509 8 H 0.059 0.941 9 C 0.000 4.000 10 H 0.036 0.964 11 C -0.141 4.141 12 C -0.153 4.153 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.137 4.137 16 C -0.051 4.051 17 H 0.086 0.914 18 C -0.053 4.053 19 C -0.094 4.094 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.166 4.166 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.572 -4.915 -4.984 12.679 hybrid contribution -0.656 1.200 0.316 1.404 sum 9.916 -3.715 -4.668 11.572 Atomic orbital electron populations 1.70026 1.07625 1.26765 1.53955 1.25558 0.94969 1.01239 0.95418 0.86246 0.79542 0.81380 0.78870 1.20007 1.22667 1.17739 1.21051 0.91216 0.92509 1.46130 0.94061 1.19630 0.94307 0.94362 0.91710 0.96435 1.21408 0.95635 0.99495 0.97589 1.21405 0.95963 0.96503 1.01460 1.20438 1.01706 0.95502 0.97154 1.20471 0.95718 1.01200 0.97313 1.21335 0.97615 0.94365 1.00386 1.20079 0.95621 0.96167 0.93235 0.91446 1.19995 0.95354 0.95461 0.94527 1.20858 0.93469 0.99521 0.95583 1.21240 0.99318 1.00083 0.95526 1.21210 0.97122 0.98356 0.99337 1.21250 0.94265 1.00774 0.99333 1.21237 1.00540 0.99449 0.95395 0.93528 0.95071 0.93536 0.91993 0.91540 0.90721 0.93050 0.91662 0.91266 0.93231 0.92627 0.88244 0.86693 0.84841 0.84478 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 2 C 0.02 1.40 5.47 84.65 0.46 1.87 16 3 Si 0.91 45.14 26.90 68.60 1.85 46.98 16 4 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 6 H -0.25 -11.73 6.85 99.48 0.68 -11.05 16 7 C -0.47 -24.98 5.62 25.60 0.14 -24.84 16 8 H 0.04 2.43 6.85 -2.91 -0.02 2.41 16 9 C 0.02 0.82 1.88 -10.82 -0.02 0.80 16 10 H 0.02 0.80 4.79 -2.38 -0.01 0.79 16 11 C -0.10 -3.97 4.67 30.14 0.14 -3.83 16 12 C -0.12 -3.39 5.61 30.20 0.17 -3.22 16 13 C -0.11 -2.82 5.26 28.74 0.15 -2.67 16 14 C -0.11 -2.84 5.27 28.78 0.15 -2.69 16 15 C -0.10 -3.32 4.12 30.24 0.12 -3.19 16 16 C -0.03 -1.22 1.71 -12.00 -0.02 -1.24 16 17 H 0.07 2.28 6.43 -2.39 -0.02 2.26 16 18 C -0.05 -2.18 4.11 -19.86 -0.08 -2.26 16 19 C -0.08 -3.31 7.05 22.27 0.16 -3.15 16 20 C -0.14 -5.80 10.05 22.27 0.22 -5.57 16 21 C -0.14 -5.11 10.05 22.27 0.22 -4.88 16 22 C -0.14 -4.82 10.05 22.27 0.22 -4.59 16 23 C -0.15 -5.56 9.66 22.27 0.22 -5.35 16 24 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.86 6.45 -2.39 -0.02 1.84 16 27 H 0.06 1.78 6.97 -2.39 -0.02 1.76 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.39 7.47 -2.39 -0.02 1.37 16 31 H 0.06 1.57 7.47 -2.39 -0.02 1.55 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.87 6.60 -2.39 -0.02 1.85 16 34 H 0.06 1.82 7.33 -2.39 -0.02 1.80 16 35 H 0.10 4.61 6.32 -2.91 -0.02 4.59 16 36 H 0.11 4.31 8.06 -2.91 -0.02 4.28 16 37 H 0.13 3.93 8.06 -2.92 -0.02 3.91 16 38 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 39 H 0.13 4.10 8.01 -2.91 -0.02 4.07 16 Total: -1.00 -62.22 292.23 5.40 -56.82 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.99 Total: 18.65 kcal Atomic # 6 Polarization: -67.09 SS G_CDS: 2.27 Total: -64.82 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.30 Total: -57.63 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.85 Total: 46.98 kcal Total: -62.22 5.40 -56.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.595 kcal (2) G-P(sol) polarization free energy of solvation -62.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds