Wall clock time and date at job start Mon Mar 30 2020 07:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09001 * 108.85444 * 61.44163 * 9 7 2 11 11 C 1.54075 * 108.87862 * 302.97661 * 9 7 2 12 12 C 1.54070 * 112.81344 * 197.50691 * 11 9 7 13 13 C 1.50469 * 112.50297 * 318.28251 * 12 11 9 14 14 C 1.54240 * 108.52687 * 94.14820 * 13 12 11 15 15 C 1.45537 * 112.39870 * 280.02092 * 14 13 12 16 16 C 1.50477 * 108.87711 * 180.02562 * 9 7 2 17 17 H 1.08998 * 109.62845 * 95.03094 * 16 9 7 18 18 C 1.50693 * 109.62486 * 334.63927 * 16 9 7 19 19 C 1.38237 * 120.00237 * 299.72522 * 18 16 9 20 20 C 1.38236 * 119.99964 * 179.79165 * 19 18 16 21 21 C 1.38231 * 120.00083 * 0.46515 * 20 19 18 22 22 C 1.38237 * 120.00013 * 359.76586 * 21 20 19 23 23 C 1.38231 * 119.99799 * 0.02908 * 22 21 20 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09002 * 108.81095 * 318.36764 * 11 9 7 26 26 H 1.08997 * 108.80921 * 76.64799 * 11 9 7 27 27 H 1.09007 * 108.87274 * 197.50070 * 12 11 9 28 28 H 1.09003 * 108.87463 * 79.06668 * 12 11 9 29 29 H 1.09002 * 109.62713 * 334.43432 * 13 12 11 30 30 H 1.08997 * 109.62772 * 213.86378 * 13 12 11 31 31 H 1.09001 * 108.89170 * 159.27386 * 14 13 12 32 32 H 1.08994 * 108.89982 * 40.77505 * 14 13 12 33 33 H 1.08996 * 108.90095 * 301.18357 * 15 14 13 34 34 H 1.09009 * 108.89459 * 182.69666 * 15 14 13 35 35 H 1.08000 * 119.99771 * 0.02562 * 19 18 16 36 36 H 1.08006 * 119.99906 * 180.25790 * 20 19 18 37 37 H 1.08004 * 120.00169 * 179.79289 * 21 20 19 38 38 H 1.08002 * 119.99798 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.00029 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6475 -2.5574 -0.9063 11 6 0.3151 -2.5344 1.2228 12 6 -0.1718 -3.9563 1.5618 13 6 -0.5381 -4.7472 0.3353 14 6 0.6873 -5.5787 -0.0959 15 6 1.6591 -4.7900 -0.8386 16 6 2.2407 -3.6327 -0.0005 17 1 2.4136 -3.9678 1.0222 18 6 3.5397 -3.1705 -0.6085 19 6 3.5682 -2.7116 -1.9122 20 6 4.7591 -2.2836 -2.4684 21 6 5.9233 -2.3234 -1.7242 22 6 5.8957 -2.7867 -0.4221 23 6 4.7041 -3.2108 0.1355 24 1 -0.4850 0.8401 0.0004 25 1 0.8470 -2.1302 2.0841 26 1 -0.5515 -1.9050 1.0205 27 1 -1.0456 -3.8848 2.2094 28 1 0.6193 -4.4816 2.0970 29 1 -0.8202 -4.0669 -0.4683 30 1 -1.3703 -5.4130 0.5640 31 1 0.3506 -6.4049 -0.7221 32 1 1.1685 -5.9855 0.7934 33 1 1.1759 -4.3769 -1.7240 34 1 2.4742 -5.4410 -1.1550 35 1 2.6593 -2.6840 -2.4948 36 1 4.7806 -1.9212 -3.4856 37 1 6.8544 -1.9921 -2.1598 38 1 6.8054 -2.8182 0.1593 39 1 4.6826 -3.5732 1.1527 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062571122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:57 Heat of formation + Delta-G solvation = -9.757210 kcal Electronic energy + Delta-G solvation = -18370.964388 eV Core-core repulsion = 15855.713237 eV Total energy + Delta-G solvation = -2515.251151 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86786 -38.76691 -35.22838 -33.97045 -32.46943 -31.55982 -30.13830 -27.40598 -25.51008 -24.09400 -23.39728 -22.32027 -20.97342 -19.82340 -18.25625 -17.38914 -16.71330 -16.17168 -15.63723 -15.45230 -15.34271 -14.99083 -14.41936 -14.18856 -14.00453 -13.73769 -13.62249 -13.04238 -12.96250 -12.72832 -12.65184 -12.44554 -11.93845 -11.89697 -11.74227 -11.38819 -11.29940 -11.11412 -10.97051 -10.79000 -10.43296 -10.24540 -9.58121 -9.13556 -8.00174 -6.06162 0.73731 0.77925 1.37552 1.38368 1.45015 2.46231 3.14726 3.27724 3.90658 3.98174 4.21065 4.24555 4.31086 4.37875 4.45784 4.56200 4.69995 4.75040 4.78164 4.88072 4.94646 5.00785 5.03082 5.11412 5.28564 5.32589 5.39975 5.42109 5.50930 5.53424 5.55477 5.64095 5.70092 5.79975 5.82220 5.87669 6.00233 6.21211 6.25897 6.40472 6.51933 7.05160 7.58920 9.04256 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.013101 C = 0.007807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.589866 B = 2136.678615 C = 3585.830950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.929 3.071 4 H -0.289 1.289 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.065 3.935 10 H -0.006 1.006 11 C -0.093 4.093 12 C -0.114 4.114 13 C -0.112 4.112 14 C -0.107 4.107 15 C -0.101 4.101 16 C -0.036 4.036 17 H 0.063 0.937 18 C -0.034 4.034 19 C -0.112 4.112 20 C -0.136 4.136 21 C -0.146 4.146 22 C -0.127 4.127 23 C -0.147 4.147 24 H 0.253 0.747 25 H 0.014 0.986 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.276 -9.537 -1.014 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.757 3.243 4 H -0.215 1.215 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.046 3.954 10 H 0.012 0.988 11 C -0.131 4.131 12 C -0.152 4.152 13 C -0.149 4.149 14 C -0.144 4.144 15 C -0.139 4.139 16 C -0.055 4.055 17 H 0.082 0.918 18 C -0.034 4.034 19 C -0.130 4.130 20 C -0.154 4.154 21 C -0.164 4.164 22 C -0.145 4.145 23 C -0.165 4.165 24 H 0.063 0.937 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.126 -9.408 -1.015 11.273 hybrid contribution -0.006 1.655 0.019 1.655 sum 6.120 -7.754 -0.996 9.928 Atomic orbital electron populations 1.70053 1.06752 1.26249 1.52889 1.25571 0.95345 1.01437 0.96032 0.86052 0.78693 0.81101 0.78503 1.21472 1.20242 1.20190 1.21869 0.93220 0.91652 1.47737 0.92125 1.18348 0.91845 0.91836 0.93335 0.98768 1.21790 0.99558 0.94514 0.97286 1.21404 0.99833 0.96168 0.97755 1.21282 0.98020 0.98055 0.97567 1.20420 0.95459 0.97918 1.00636 1.20464 0.98490 0.96535 0.98378 1.20037 0.92103 0.95614 0.97705 0.91818 1.19813 0.94745 0.95255 0.93549 1.20901 0.97344 0.99057 0.95703 1.21309 0.93007 1.00419 1.00625 1.21270 0.98489 1.01696 0.94971 1.21309 0.98053 0.99307 0.95805 1.21203 0.92805 1.02622 0.99888 0.93731 0.96739 0.93514 0.93373 0.92358 0.93903 0.90787 0.90850 0.91525 0.93785 0.92016 0.88160 0.85409 0.84285 0.84266 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.75 11.31 21.45 0.24 -53.50 16 2 C 0.01 0.76 5.28 84.66 0.45 1.21 16 3 Si 0.93 45.22 29.54 68.60 2.03 47.25 16 4 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.51 -27.29 7.04 25.60 0.18 -27.11 16 8 H 0.06 3.28 5.35 -2.91 -0.02 3.27 16 9 C 0.06 3.11 1.34 -11.99 -0.02 3.10 16 10 H -0.01 -0.31 6.63 -2.39 -0.02 -0.33 16 11 C -0.09 -4.40 4.61 31.32 0.14 -4.26 16 12 C -0.11 -4.15 5.31 30.14 0.16 -3.99 16 13 C -0.11 -3.63 5.61 30.20 0.17 -3.46 16 14 C -0.11 -3.08 5.26 28.74 0.15 -2.93 16 15 C -0.10 -3.38 4.30 28.74 0.12 -3.26 16 16 C -0.04 -1.43 1.93 -11.93 -0.02 -1.45 16 17 H 0.06 2.46 6.74 -2.39 -0.02 2.45 16 18 C -0.03 -1.32 2.66 -19.87 -0.05 -1.37 16 19 C -0.11 -4.40 7.74 22.27 0.17 -4.23 16 20 C -0.14 -4.64 10.05 22.27 0.22 -4.42 16 21 C -0.15 -4.48 10.05 22.27 0.22 -4.25 16 22 C -0.13 -3.93 10.05 22.27 0.22 -3.70 16 23 C -0.15 -5.19 9.40 22.27 0.21 -4.98 16 24 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.01 0.70 7.97 -2.39 -0.02 0.68 16 26 H 0.05 2.51 6.48 -2.39 -0.02 2.49 16 27 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.06 1.95 6.64 -2.39 -0.02 1.93 16 29 H 0.04 1.62 6.97 -2.39 -0.02 1.61 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.77 7.47 -2.39 -0.02 1.75 16 33 H 0.04 1.59 7.39 -2.39 -0.02 1.57 16 34 H 0.06 1.87 7.97 -2.38 -0.02 1.85 16 35 H 0.10 4.17 7.96 -2.91 -0.02 4.14 16 36 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 38 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.12 3.91 7.95 -2.91 -0.02 3.89 16 Total: -1.00 -60.60 295.23 5.61 -54.99 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 1.01 Total: 16.38 kcal Atomic # 6 Polarization: -67.45 SS G_CDS: 2.34 Total: -65.11 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.24 Total: -53.50 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -60.60 5.61 -54.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.233 kcal (2) G-P(sol) polarization free energy of solvation -60.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds