Wall clock time and date at job start Mon Mar 30 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50698 * 109.47099 * 2 1 4 4 N 1.30112 * 124.94930 * 89.97352 * 3 2 1 5 5 C 1.35785 * 109.64631 * 180.02562 * 4 3 2 6 6 C 1.39735 * 133.60204 * 179.97438 * 5 4 3 7 7 C 1.36605 * 119.88505 * 180.02562 * 6 5 4 8 8 C 1.38772 * 120.67413 * 359.97438 * 7 6 5 9 9 C 1.37857 * 120.44773 * 359.97248 * 8 7 6 10 10 C 1.38836 * 119.69151 * 0.06034 * 9 8 7 11 11 N 1.36038 * 124.95255 * 270.00497 * 3 2 1 12 12 C 1.46497 * 126.35114 * 359.97098 * 11 3 2 13 13 H 1.09002 * 109.46747 * 0.02562 * 12 11 3 14 14 C 1.52997 * 109.47491 * 240.00480 * 12 11 3 15 15 C 1.50704 * 109.46975 * 120.00088 * 12 11 3 16 16 H 1.07998 * 119.99839 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99945 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00017 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99984 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46827 * 90.00549 * 19 17 15 21 21 H 1.48498 * 109.47281 * 210.00366 * 19 17 15 22 22 H 1.48494 * 109.47168 * 330.00466 * 19 17 15 23 23 H 1.09003 * 109.47433 * 60.00167 * 1 2 3 24 24 H 1.09008 * 109.46922 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47442 * 299.99691 * 1 2 3 26 26 H 1.09010 * 109.47192 * 240.00323 * 2 1 3 27 27 H 1.08998 * 109.47446 * 120.00302 * 2 1 3 28 28 H 1.08000 * 120.05646 * 359.97438 * 6 5 4 29 29 H 1.07999 * 119.66329 * 179.72373 * 7 6 5 30 30 H 1.07998 * 119.77865 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.15633 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47362 * 299.99913 * 14 12 11 33 33 H 1.08997 * 109.47241 * 59.99786 * 14 12 11 34 34 H 1.09002 * 109.47129 * 179.97438 * 14 12 11 35 35 H 0.97003 * 120.00273 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2802 2.1237 1.0665 5 6 2.7164 3.3586 0.7081 6 6 3.1143 4.4871 1.4298 7 6 3.5118 5.6136 0.7671 8 6 3.5260 5.6510 -0.6201 9 6 3.1387 4.5493 -1.3527 10 6 2.7309 3.3958 -0.6964 11 7 2.2919 2.1556 -1.1150 12 6 2.1358 1.7127 -2.5027 13 1 1.7725 0.6851 -2.5173 14 6 3.4869 1.7867 -3.2167 15 6 1.1461 2.6051 -3.2065 16 1 0.6804 3.4208 -2.6735 17 6 0.8353 2.3801 -4.5308 18 7 1.4021 1.3865 -5.1796 19 14 -0.3920 3.4858 -5.4029 20 1 0.3251 4.6287 -6.0232 21 1 -1.0941 2.7110 -6.4574 22 1 -1.3825 3.9966 -4.4216 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.1067 4.4690 2.5096 29 1 3.8143 6.4852 1.3284 30 1 3.8433 6.5491 -1.1291 31 1 3.1519 4.5835 -2.4320 32 1 3.8499 2.8144 -3.2021 33 1 4.2027 1.1413 -2.7077 34 1 3.3708 1.4567 -4.2491 35 1 1.1832 1.2279 -6.1112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062807690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:08 Heat of formation + Delta-G solvation = 53.960331 kcal Electronic energy + Delta-G solvation = -17733.042789 eV Core-core repulsion = 15117.014295 eV Total energy + Delta-G solvation = -2616.028494 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.42576 -36.90115 -34.96607 -32.98392 -32.31808 -30.00538 -28.49238 -28.14736 -25.48513 -23.97456 -22.43223 -21.24559 -20.68821 -19.02149 -16.99687 -16.53626 -15.83099 -14.98544 -14.64833 -14.51041 -13.87768 -13.41183 -13.28429 -13.16986 -12.67967 -12.17299 -12.04030 -11.58428 -11.46578 -11.31784 -11.20145 -11.05841 -10.82427 -10.75026 -10.61692 -10.46493 -10.25263 -9.79137 -9.27004 -9.08805 -8.70245 -7.54831 -7.34084 -6.34601 -4.44352 1.62041 2.22724 3.13972 3.21421 3.25293 3.49320 3.67568 4.20558 4.53095 4.71625 4.97183 5.20324 5.47533 5.51199 5.61437 5.65159 5.84799 6.02729 6.11099 6.12784 6.16841 6.21849 6.39247 6.41794 6.57310 6.59952 6.65973 6.80608 7.02483 7.08889 7.24640 7.34253 7.49653 7.57229 7.64418 7.90302 8.10601 8.60245 8.68428 9.24056 10.70403 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.009728 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.466847 B = 2877.622571 C = 3718.987367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C 0.276 3.724 4 N -0.519 5.519 5 C 0.034 3.966 6 C -0.079 4.079 7 C -0.138 4.138 8 C -0.130 4.130 9 C -0.086 4.086 10 C 0.065 3.935 11 N -0.450 5.450 12 C 0.257 3.743 13 H 0.062 0.938 14 C -0.152 4.152 15 C -0.532 4.532 16 H 0.065 0.935 17 C 0.071 3.929 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.272 1.272 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.039 0.961 33 H 0.016 0.984 34 H 0.102 0.898 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.944 1.325 6.040 6.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C 0.010 3.990 4 N -0.240 5.240 5 C -0.086 4.086 6 C -0.099 4.099 7 C -0.158 4.158 8 C -0.150 4.150 9 C -0.106 4.106 10 C -0.048 4.048 11 N -0.135 5.135 12 C 0.157 3.843 13 H 0.079 0.921 14 C -0.211 4.211 15 C -0.570 4.570 16 H 0.083 0.917 17 C -0.133 4.133 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.197 1.197 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.058 0.942 33 H 0.035 0.965 34 H 0.120 0.880 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.826 0.878 6.493 6.802 hybrid contribution -0.539 0.864 -1.481 1.798 sum 1.288 1.743 5.012 5.460 Atomic orbital electron populations 1.21708 0.93745 1.01869 1.03029 1.20042 0.96803 0.87559 1.03688 1.23424 0.98062 0.95873 0.81621 1.70301 1.22399 1.03457 1.27835 1.19111 1.04907 0.93703 0.90871 1.19784 1.00444 0.90864 0.98796 1.20430 1.03460 0.97613 0.94342 1.20741 1.02792 0.97667 0.93825 1.20219 0.99775 0.90509 1.00085 1.18822 1.03245 0.88503 0.94213 1.46176 1.48785 1.09430 1.09106 1.19340 0.95169 0.97148 0.72623 0.92067 1.22169 0.95335 0.99576 1.03995 1.21208 1.24493 1.15145 0.96131 0.91724 1.24860 0.96171 0.95359 0.96913 1.69842 1.42402 1.29084 1.11018 0.86394 0.81022 0.80326 0.79257 1.20258 1.20854 1.19670 0.91568 0.92001 0.92384 0.89836 0.89277 0.86552 0.86509 0.86300 0.85490 0.94169 0.96509 0.87966 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.89 37.15 0.37 -1.88 16 2 C -0.04 -0.70 6.06 -27.89 -0.17 -0.86 16 3 C 0.28 5.75 7.11 -154.82 -1.10 4.65 16 4 N -0.52 -11.23 11.27 -8.23 -0.09 -11.33 16 5 C 0.03 0.74 7.23 -84.70 -0.61 0.13 16 6 C -0.08 -1.43 10.05 -39.61 -0.40 -1.83 16 7 C -0.14 -2.21 9.96 -39.97 -0.40 -2.60 16 8 C -0.13 -2.19 10.03 -39.52 -0.40 -2.59 16 9 C -0.09 -1.72 9.25 -39.50 -0.37 -2.09 16 10 C 0.06 1.43 6.17 -83.98 -0.52 0.91 16 11 N -0.45 -10.14 2.64 -105.33 -0.28 -10.41 16 12 C 0.26 6.06 2.89 -69.08 -0.20 5.86 16 13 H 0.06 1.49 6.62 -51.93 -0.34 1.14 16 14 C -0.15 -3.47 9.03 37.16 0.34 -3.14 16 15 C -0.53 -13.62 8.38 -34.44 -0.29 -13.90 16 16 H 0.06 1.74 7.75 -52.49 -0.41 1.34 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 18 N -0.89 -22.94 11.32 55.43 0.63 -22.31 16 19 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 1.35 7.03 -51.92 -0.36 0.99 16 27 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.13 2.62 7.05 -52.49 -0.37 2.25 16 32 H 0.04 0.90 6.33 -51.93 -0.33 0.57 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 291.49 15.07 4.39 4.39 Total: -1.00 -27.88 291.49 -8.86 -36.73 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.65 Total: 3.43 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -3.84 Total: -15.65 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.26 Total: -44.05 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.88 -8.86 -36.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062807690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.694 kcal (2) G-P(sol) polarization free energy of solvation -27.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds