Wall clock time and date at job start Mon Mar 30 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50698 * 109.47099 * 2 1 4 4 N 1.30112 * 124.94930 * 89.97352 * 3 2 1 5 5 C 1.35785 * 109.64631 * 180.02562 * 4 3 2 6 6 C 1.39735 * 133.60204 * 179.97438 * 5 4 3 7 7 C 1.36605 * 119.88505 * 180.02562 * 6 5 4 8 8 C 1.38772 * 120.67413 * 359.97438 * 7 6 5 9 9 C 1.37857 * 120.44773 * 359.97248 * 8 7 6 10 10 C 1.38836 * 119.69151 * 0.06034 * 9 8 7 11 11 N 1.36038 * 124.95255 * 270.00497 * 3 2 1 12 12 C 1.46497 * 126.35114 * 359.97098 * 11 3 2 13 13 H 1.09002 * 109.46747 * 0.02562 * 12 11 3 14 14 C 1.52997 * 109.47491 * 240.00480 * 12 11 3 15 15 C 1.50704 * 109.46975 * 120.00088 * 12 11 3 16 16 H 1.07998 * 119.99839 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99945 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00017 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99984 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46827 * 90.00549 * 19 17 15 21 21 H 1.48498 * 109.47281 * 210.00366 * 19 17 15 22 22 H 1.48494 * 109.47168 * 330.00466 * 19 17 15 23 23 H 1.09003 * 109.47433 * 60.00167 * 1 2 3 24 24 H 1.09008 * 109.46922 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47442 * 299.99691 * 1 2 3 26 26 H 1.09010 * 109.47192 * 240.00323 * 2 1 3 27 27 H 1.08998 * 109.47446 * 120.00302 * 2 1 3 28 28 H 1.08000 * 120.05646 * 359.97438 * 6 5 4 29 29 H 1.07999 * 119.66329 * 179.72373 * 7 6 5 30 30 H 1.07998 * 119.77865 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.15633 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47362 * 299.99913 * 14 12 11 33 33 H 1.08997 * 109.47241 * 59.99786 * 14 12 11 34 34 H 1.09002 * 109.47129 * 179.97438 * 14 12 11 35 35 H 0.97003 * 120.00273 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2802 2.1237 1.0665 5 6 2.7164 3.3586 0.7081 6 6 3.1143 4.4871 1.4298 7 6 3.5118 5.6136 0.7671 8 6 3.5260 5.6510 -0.6201 9 6 3.1387 4.5493 -1.3527 10 6 2.7309 3.3958 -0.6964 11 7 2.2919 2.1556 -1.1150 12 6 2.1358 1.7127 -2.5027 13 1 1.7725 0.6851 -2.5173 14 6 3.4869 1.7867 -3.2167 15 6 1.1461 2.6051 -3.2065 16 1 0.6804 3.4208 -2.6735 17 6 0.8353 2.3801 -4.5308 18 7 1.4021 1.3865 -5.1796 19 14 -0.3920 3.4858 -5.4029 20 1 0.3251 4.6287 -6.0232 21 1 -1.0941 2.7110 -6.4574 22 1 -1.3825 3.9966 -4.4216 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.1067 4.4690 2.5096 29 1 3.8143 6.4852 1.3284 30 1 3.8433 6.5491 -1.1291 31 1 3.1519 4.5835 -2.4320 32 1 3.8499 2.8144 -3.2021 33 1 4.2027 1.1413 -2.7077 34 1 3.3708 1.4567 -4.2491 35 1 1.1832 1.2279 -6.1112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062807690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:08 Heat of formation + Delta-G solvation = 40.378697 kcal Electronic energy + Delta-G solvation = -17733.631733 eV Core-core repulsion = 15117.014295 eV Total energy + Delta-G solvation = -2616.617438 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.98080 -38.34810 -36.75640 -34.32812 -34.13293 -31.59030 -30.16583 -29.58753 -27.45138 -25.33413 -24.11851 -22.73443 -22.24649 -20.60932 -18.80338 -18.07751 -17.57510 -16.49714 -16.29536 -16.11146 -15.31576 -14.95098 -14.81324 -14.62393 -14.35868 -13.86020 -13.49930 -13.27167 -13.12102 -12.89232 -12.84036 -12.56754 -12.44567 -12.34655 -12.12540 -12.06253 -11.89846 -11.56196 -10.94910 -10.78568 -10.64070 -9.06694 -8.87120 -8.29413 -6.45787 0.15044 0.77749 1.35315 1.38003 1.46961 1.92416 2.07311 2.34951 2.99049 3.05925 3.29104 3.70775 4.15634 4.19914 4.26024 4.34390 4.37571 4.50937 4.62499 4.68755 4.73674 4.78011 4.80211 4.94342 4.96877 5.09869 5.17972 5.31401 5.39288 5.50992 5.66561 5.69386 5.77809 5.78828 6.03672 6.13641 6.39501 6.66787 7.07711 7.25373 8.74189 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.009728 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.466847 B = 2877.622571 C = 3718.987367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.042 4.042 3 C 0.262 3.738 4 N -0.532 5.532 5 C 0.006 3.994 6 C -0.086 4.086 7 C -0.123 4.123 8 C -0.114 4.114 9 C -0.115 4.115 10 C 0.034 3.966 11 N -0.465 5.465 12 C 0.265 3.735 13 H 0.050 0.950 14 C -0.139 4.139 15 C -0.542 4.542 16 H 0.043 0.957 17 C 0.035 3.965 18 N -0.903 5.903 19 Si 0.957 3.043 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.278 1.278 23 H 0.034 0.966 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.139 0.861 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.111 0.889 32 H 0.036 0.964 33 H 0.026 0.974 34 H 0.086 0.914 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 2.515 6.924 7.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 C -0.003 4.003 4 N -0.254 5.254 5 C -0.114 4.114 6 C -0.105 4.105 7 C -0.143 4.143 8 C -0.133 4.133 9 C -0.136 4.136 10 C -0.078 4.078 11 N -0.151 5.151 12 C 0.165 3.835 13 H 0.067 0.933 14 C -0.198 4.198 15 C -0.580 4.580 16 H 0.062 0.938 17 C -0.167 4.167 18 N -0.541 5.541 19 Si 0.783 3.217 20 H -0.197 1.197 21 H -0.200 1.200 22 H -0.203 1.203 23 H 0.054 0.946 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.132 0.868 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.173 0.827 31 H 0.129 0.871 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.105 0.895 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.071 2.078 7.391 7.952 hybrid contribution -0.566 0.579 -1.683 1.868 sum 1.505 2.657 5.708 6.473 Atomic orbital electron populations 1.21642 0.92932 1.03524 1.01328 1.20234 0.97384 0.85586 1.04860 1.24185 0.97791 0.97217 0.81103 1.70288 1.23049 1.03969 1.28070 1.19648 1.06025 0.94659 0.91045 1.20216 0.99901 0.90366 1.00063 1.20941 1.01067 0.98241 0.94075 1.21219 1.00123 0.97480 0.94515 1.20342 1.02065 0.91497 0.99704 1.19258 1.04442 0.88964 0.95096 1.46114 1.49995 1.10226 1.08794 1.19054 0.94860 0.96056 0.73573 0.93261 1.21988 0.95345 0.99435 1.02988 1.21224 1.25172 1.15008 0.96582 0.93850 1.25467 0.97484 0.96436 0.97303 1.69912 1.43046 1.29827 1.11312 0.85560 0.79034 0.78992 0.78160 1.19687 1.19952 1.20349 0.94648 0.88645 0.92535 0.89781 0.86814 0.84322 0.81836 0.82739 0.87066 0.94522 0.95483 0.89515 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.89 71.98 0.71 -3.47 16 2 C -0.04 -1.38 6.06 29.84 0.18 -1.20 16 3 C 0.26 11.12 7.11 137.92 0.98 12.10 16 4 N -0.53 -23.13 11.27 -179.96 -2.03 -25.16 16 5 C 0.01 0.24 7.23 39.45 0.29 0.53 16 6 C -0.09 -2.91 10.05 22.25 0.22 -2.68 16 7 C -0.12 -3.48 9.96 22.02 0.22 -3.26 16 8 C -0.11 -3.54 10.03 22.31 0.22 -3.32 16 9 C -0.12 -4.66 9.25 22.32 0.21 -4.45 16 10 C 0.03 1.51 6.17 38.86 0.24 1.75 16 11 N -0.47 -21.55 2.64 -487.17 -1.29 -22.84 16 12 C 0.26 12.91 2.89 44.25 0.13 13.04 16 13 H 0.05 2.49 6.62 -2.39 -0.02 2.47 16 14 C -0.14 -6.51 9.03 71.98 0.65 -5.86 16 15 C -0.54 -28.59 8.38 25.60 0.21 -28.37 16 16 H 0.04 2.43 7.75 -2.91 -0.02 2.41 16 17 C 0.03 1.80 5.30 84.65 0.45 2.25 16 18 N -0.90 -47.26 11.32 21.45 0.24 -47.01 16 19 Si 0.96 41.61 29.54 68.60 2.03 43.63 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 26 H 0.08 2.74 7.03 -2.38 -0.02 2.72 16 27 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 29 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.11 4.73 7.05 -2.91 -0.02 4.70 16 32 H 0.04 1.69 6.33 -2.39 -0.02 1.67 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 4.32 6.07 -2.39 -0.01 4.30 16 35 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -61.15 291.49 4.74 -56.41 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 1.08 Total: 17.92 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 4.71 Total: -22.96 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -3.07 Total: -95.01 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -61.15 4.74 -56.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062807690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.786 kcal (2) G-P(sol) polarization free energy of solvation -61.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds