Wall clock time and date at job start Mon Mar 30 2020 05:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37670 * 119.96026 * 2 1 4 4 C 1.39786 * 119.92368 * 180.02562 * 3 2 1 5 5 C 1.43205 * 120.07560 * 179.97438 * 4 3 2 6 6 N 4.79920 * 134.66610 * 359.97438 * 2 1 3 7 7 C 1.39827 * 119.84980 * 0.27420 * 4 3 2 8 8 C 1.37626 * 119.92325 * 359.39656 * 7 4 3 9 9 C 1.39158 * 119.96430 * 179.97438 * 2 1 3 10 10 N 1.39185 * 119.92557 * 0.02562 * 9 2 1 11 11 C 1.46907 * 111.00019 * 116.04414 * 10 9 2 12 12 C 1.46896 * 111.00501 * 239.99999 * 10 9 2 13 13 H 1.09006 * 109.46868 * 300.00142 * 12 10 9 14 14 C 1.52999 * 109.46971 * 59.99473 * 12 10 9 15 15 C 1.50693 * 109.47414 * 180.02562 * 12 10 9 16 16 H 1.08000 * 120.00186 * 359.97438 * 15 12 10 17 17 C 1.37884 * 119.99897 * 179.97438 * 15 12 10 18 18 N 1.31520 * 119.99747 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00197 * 359.97438 * 17 15 12 20 20 H 1.48508 * 109.46828 * 89.99918 * 19 17 15 21 21 H 1.48493 * 109.47245 * 209.99951 * 19 17 15 22 22 H 1.48504 * 109.47062 * 330.00256 * 19 17 15 23 23 H 1.08992 * 109.47071 * 90.00441 * 1 2 3 24 24 H 1.09006 * 109.46879 * 210.00508 * 1 2 3 25 25 H 1.08995 * 109.47027 * 329.99630 * 1 2 3 26 26 H 1.07999 * 120.04145 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.03968 * 179.72491 * 7 4 3 28 28 H 1.08006 * 119.96343 * 180.31572 * 8 7 4 29 29 H 1.08992 * 109.47161 * 60.00020 * 11 10 9 30 30 H 1.08998 * 109.47063 * 180.02562 * 11 10 9 31 31 H 1.09004 * 109.46841 * 300.00225 * 11 10 9 32 32 H 1.08996 * 109.46686 * 60.00772 * 14 12 10 33 33 H 1.08996 * 109.47001 * 180.02562 * 14 12 10 34 34 H 1.08997 * 109.47802 * 300.00384 * 14 12 10 35 35 H 0.96998 * 119.99536 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1927 0.0000 4 6 3.5924 1.1918 -0.0005 5 6 4.3108 2.4306 -0.0011 6 7 4.8807 3.4133 -0.0015 7 6 4.2876 -0.0214 -0.0069 8 6 3.5940 -1.2101 0.0000 9 6 2.2020 -1.2056 0.0005 10 7 1.5038 -2.4096 0.0005 11 6 1.7611 -3.1674 -1.2314 12 6 1.8323 -3.2088 1.1885 13 1 2.9008 -3.4244 1.1972 14 6 1.4599 -2.4257 2.4490 15 6 1.0597 -4.5021 1.1533 16 1 0.3911 -4.7095 0.3309 17 6 1.2064 -5.4207 2.1710 18 7 0.5325 -6.5497 2.1400 19 14 2.3634 -5.0624 3.5931 20 1 1.6210 -4.3592 4.6701 21 1 2.9098 -6.3385 4.1204 22 1 3.4791 -4.2044 3.1194 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 1.6546 2.1280 0.0004 27 1 5.3676 -0.0256 -0.0118 28 1 4.1304 -2.1475 0.0003 29 1 2.8268 -3.3815 -1.3104 30 1 1.2030 -4.1034 -1.2055 31 1 1.4438 -2.5793 -2.0926 32 1 0.3915 -2.2101 2.4403 33 1 1.7041 -3.0185 3.3304 34 1 2.0191 -1.4904 2.4742 35 1 0.6354 -7.1957 2.8562 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:26 Heat of formation + Delta-G solvation = 68.723258 kcal Electronic energy + Delta-G solvation = -17345.091806 eV Core-core repulsion = 14729.703480 eV Total energy + Delta-G solvation = -2615.388326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.03877 -37.31154 -35.93036 -32.96702 -32.61006 -30.63818 -29.74910 -26.83663 -25.67711 -24.54574 -22.78879 -21.76390 -19.93038 -18.14968 -17.00283 -15.86718 -15.63427 -15.35026 -14.35394 -14.11994 -13.83692 -13.52408 -13.33636 -13.11649 -12.95328 -12.91899 -12.58894 -12.26836 -12.15112 -11.91927 -11.56396 -11.35874 -11.11163 -10.94304 -10.71685 -10.67228 -10.23643 -9.61818 -9.22464 -8.79678 -8.66755 -8.33627 -7.71712 -6.17156 -4.17246 0.84085 1.42919 2.64679 2.96604 3.20029 3.29640 3.32221 3.90112 3.91946 4.30363 4.46234 4.89565 4.95889 5.14768 5.29028 5.46246 5.61496 5.74689 5.94925 5.98716 6.04236 6.07253 6.21765 6.24512 6.33110 6.34549 6.43619 6.50674 6.67614 6.75954 6.77920 6.91307 7.12532 7.45523 7.47311 7.72249 7.98588 8.52404 8.87865 9.43608 10.95058 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031111 B = 0.006627 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.787883 B = 4224.337169 C = 4539.742153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.072 4.072 3 C -0.067 4.067 4 C -0.054 4.054 5 C 0.266 3.734 6 N -0.438 5.438 7 C -0.066 4.066 8 C -0.155 4.155 9 C 0.151 3.849 10 N -0.501 5.501 11 C 0.041 3.959 12 C 0.187 3.813 13 H 0.005 0.995 14 C -0.147 4.147 15 C -0.511 4.511 16 H 0.086 0.914 17 C 0.074 3.926 18 N -0.895 5.895 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.268 1.268 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.020 0.980 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.029 0.971 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 10.572 -4.289 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.073 4.073 3 C -0.088 4.088 4 C -0.057 4.057 5 C -0.048 4.048 6 N -0.114 5.114 7 C -0.087 4.087 8 C -0.175 4.175 9 C 0.055 3.945 10 N -0.223 5.223 11 C -0.106 4.106 12 C 0.082 3.918 13 H 0.022 0.978 14 C -0.204 4.204 15 C -0.549 4.549 16 H 0.104 0.896 17 C -0.128 4.128 18 N -0.533 5.533 19 Si 0.713 3.287 20 H -0.204 1.204 21 H -0.224 1.224 22 H -0.194 1.194 23 H 0.085 0.915 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.039 0.961 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.216 11.986 -4.180 13.095 hybrid contribution 1.339 -0.520 0.949 1.722 sum 4.554 11.466 -3.231 12.754 Atomic orbital electron populations 1.20683 0.89885 1.03371 1.02354 1.19798 0.97084 0.90793 0.99634 1.20929 0.91515 0.98238 0.98161 1.15961 0.92267 0.86668 1.10842 1.25812 0.93132 0.92855 0.93023 1.81210 1.08922 1.11127 1.10106 1.20938 0.99640 0.90594 0.97572 1.21783 0.95372 0.98279 1.02092 1.19252 0.89922 0.92699 0.92655 1.59613 1.55388 1.02776 1.04493 1.22317 0.99305 0.99311 0.89621 1.19805 0.95091 0.92034 0.84873 0.97772 1.22176 1.01818 0.97987 0.98462 1.20921 1.26137 0.98505 1.09335 0.89605 1.24885 0.95326 0.94882 0.97736 1.69866 1.41362 1.08538 1.33503 0.86938 0.81801 0.76661 0.83299 1.20423 1.22383 1.19364 0.91454 0.89096 0.92508 0.85251 0.85623 0.85121 0.96117 0.88907 0.93061 0.91898 0.93815 0.95206 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.76 36.01 0.35 -0.98 16 2 C -0.07 -0.98 5.89 -104.49 -0.62 -1.60 16 3 C -0.07 -0.81 9.39 -39.21 -0.37 -1.18 16 4 C -0.05 -0.67 5.74 -106.80 -0.61 -1.28 16 5 C 0.27 3.51 15.33 -22.47 -0.34 3.17 16 6 N -0.44 -6.54 18.54 41.83 0.78 -5.76 16 7 C -0.07 -0.82 9.75 -39.21 -0.38 -1.21 16 8 C -0.15 -2.24 8.53 -39.45 -0.34 -2.58 16 9 C 0.15 2.37 3.29 -83.82 -0.28 2.09 16 10 N -0.50 -9.15 3.53 -172.67 -0.61 -9.75 16 11 C 0.04 0.69 9.10 60.07 0.55 1.24 16 12 C 0.19 4.03 1.42 -68.87 -0.10 3.94 16 13 H 0.00 0.11 6.16 -51.93 -0.32 -0.21 16 14 C -0.15 -3.03 8.55 37.16 0.32 -2.71 16 15 C -0.51 -13.12 8.46 -34.44 -0.29 -13.41 16 16 H 0.09 2.38 6.65 -52.49 -0.35 2.03 16 17 C 0.07 2.01 5.45 -17.81 -0.10 1.91 16 18 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 19 Si 0.88 20.84 24.37 -169.99 -4.14 16.70 16 20 H -0.28 -6.44 6.87 56.52 0.39 -6.05 16 21 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.27 -6.08 6.53 56.52 0.37 -5.71 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.09 1.36 7.45 -51.93 -0.39 0.97 16 25 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.13 1.91 6.99 -52.48 -0.37 1.54 16 29 H 0.02 0.33 7.32 -51.93 -0.38 -0.05 16 30 H 0.09 1.76 6.10 -51.93 -0.32 1.45 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.04 0.95 3.28 -51.93 -0.17 0.78 16 34 H 0.03 0.55 7.22 -51.93 -0.37 0.17 16 35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 289.65 15.07 4.36 4.36 Total: -1.00 -28.14 289.65 -5.42 -33.57 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -4.38 Total: -1.40 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -2.21 Total: -12.60 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.94 Total: -40.63 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.14 Total: 16.70 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.14 -5.42 -33.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.291 kcal (2) G-P(sol) polarization free energy of solvation -28.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds