Wall clock time and date at job start Mon Mar 30 2020 06:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47107 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00475 * 2 1 3 5 5 C 1.36938 * 119.99752 * 300.86978 * 4 2 1 6 6 H 1.07992 * 120.00253 * 321.64739 * 5 4 2 7 7 C 1.38814 * 119.99731 * 141.64079 * 5 4 2 8 8 N 1.31614 * 120.00067 * 338.80162 * 7 5 4 9 9 Si 1.86802 * 119.99721 * 158.79726 * 7 5 4 10 10 H 1.48501 * 109.47103 * 90.00544 * 9 7 5 11 11 H 1.48508 * 109.46830 * 209.99960 * 9 7 5 12 12 H 1.48494 * 109.47337 * 330.00330 * 9 7 5 13 13 C 1.46498 * 120.00199 * 120.87523 * 4 2 1 14 14 C 1.50698 * 109.47022 * 89.99488 * 13 4 2 15 15 C 1.38384 * 119.92677 * 270.02288 * 14 13 4 16 16 C 1.38346 * 120.30430 * 179.97438 * 15 14 13 17 17 C 1.37967 * 120.15005 * 359.67752 * 16 15 14 18 18 C 1.39609 * 119.84741 * 0.59977 * 17 16 15 19 19 C 1.43195 * 120.15139 * 179.69898 * 18 17 16 20 20 N 7.59952 * 144.48621 * 99.74202 * 2 1 3 21 21 C 1.37929 * 119.92217 * 90.00360 * 14 13 4 22 22 H 1.09000 * 109.47027 * 305.35604 * 1 2 3 23 23 H 1.08996 * 109.46925 * 65.35595 * 1 2 3 24 24 H 1.08998 * 109.46904 * 185.35806 * 1 2 3 25 25 H 1.08998 * 109.46954 * 240.00042 * 2 1 3 26 26 H 1.09001 * 109.46989 * 179.39572 * 3 2 1 27 27 H 1.09000 * 109.47748 * 299.39614 * 3 2 1 28 28 H 1.09000 * 109.47023 * 59.39994 * 3 2 1 29 29 H 0.97000 * 120.00105 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47359 * 329.99866 * 13 4 2 31 31 H 1.08997 * 109.47461 * 209.99522 * 13 4 2 32 32 H 1.08000 * 119.84817 * 359.97438 * 15 14 13 33 33 H 1.08003 * 119.92190 * 179.97438 * 16 15 14 34 34 H 1.08004 * 120.07250 * 180.30105 * 17 16 15 35 35 H 1.07997 * 120.07552 * 0.03983 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6729 -0.2334 2.4398 6 1 1.6172 0.8284 2.6284 7 6 1.3942 -1.1348 3.4580 8 7 1.0512 -2.3716 3.1664 9 14 1.5060 -0.5925 5.2420 10 1 0.1887 -0.0678 5.6834 11 1 1.8860 -1.7517 6.0889 12 1 2.5320 0.4731 5.3721 13 6 2.8764 -1.8705 1.0618 14 6 4.3203 -1.4404 1.0282 15 6 4.9255 -1.1477 -0.1814 16 6 6.2504 -0.7516 -0.2212 17 6 6.9756 -0.6394 0.9471 18 6 6.3730 -0.9387 2.1704 19 6 7.1215 -0.8307 3.3864 20 7 7.7159 -0.7470 4.3509 21 6 5.0355 -1.3389 2.2032 22 1 -0.3633 0.5947 0.8381 23 1 -0.3633 0.4285 -0.9340 24 1 -0.3633 -1.0232 0.0960 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4424 0.0108 27 1 1.6857 1.9532 -0.8953 28 1 1.6680 1.9593 0.8846 29 1 0.8568 -3.0016 3.8778 30 1 2.6318 -2.3944 0.1377 31 1 2.7151 -2.5357 1.9101 32 1 4.3609 -1.2288 -1.0985 33 1 6.7168 -0.5250 -1.1687 34 1 8.0085 -0.3253 0.9150 35 1 4.5620 -1.5680 3.1464 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070216230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:03 Heat of formation + Delta-G solvation = 52.445905 kcal Electronic energy + Delta-G solvation = -17398.046275 eV Core-core repulsion = 14781.952110 eV Total energy + Delta-G solvation = -2616.094165 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 5.12 seconds Orbital eigenvalues (eV) -40.36196 -38.19628 -37.34295 -34.29391 -33.25407 -32.05539 -30.63093 -27.68955 -27.38317 -25.06159 -24.52343 -22.45449 -21.23486 -19.29217 -17.96480 -17.04845 -16.89080 -16.25275 -15.97573 -15.38699 -15.21096 -15.00032 -14.51819 -14.20547 -14.09570 -13.87572 -13.51846 -13.32421 -13.10370 -12.98811 -12.84279 -12.65160 -12.34875 -12.29195 -12.25377 -11.71668 -11.69466 -11.59366 -11.21605 -10.47751 -9.74061 -9.53804 -8.46973 -7.79070 -5.36877 -0.04642 0.60979 1.37766 1.44785 1.49955 1.57887 1.99283 2.49949 2.92800 3.03550 3.30385 3.85016 4.11770 4.13692 4.36299 4.42955 4.57010 4.63570 4.72558 4.82756 4.88014 5.02895 5.10472 5.22601 5.23725 5.27692 5.29052 5.49485 5.58514 5.64878 5.68067 5.74003 5.85627 5.95872 6.12641 6.42071 6.55955 7.24622 7.95303 8.45962 9.16341 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016378 B = 0.010357 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.246538 B = 2702.767740 C = 3872.249227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.157 3.843 3 C -0.143 4.143 4 N -0.583 5.583 5 C -0.237 4.237 6 H 0.048 0.952 7 C -0.023 4.023 8 N -0.908 5.908 9 Si 0.923 3.077 10 H -0.285 1.285 11 H -0.296 1.296 12 H -0.281 1.281 13 C 0.177 3.823 14 C -0.088 4.088 15 C -0.080 4.080 16 C -0.111 4.111 17 C -0.074 4.074 18 C -0.053 4.053 19 C 0.281 3.719 20 N -0.474 5.474 21 C -0.069 4.069 22 H 0.030 0.970 23 H 0.065 0.935 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.249 0.751 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.169 2.898 -11.733 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.051 3.949 3 C -0.202 4.202 4 N -0.303 5.303 5 C -0.368 4.368 6 H 0.066 0.934 7 C -0.221 4.221 8 N -0.552 5.552 9 Si 0.753 3.247 10 H -0.211 1.211 11 H -0.222 1.222 12 H -0.207 1.207 13 C 0.051 3.949 14 C -0.091 4.091 15 C -0.100 4.100 16 C -0.129 4.129 17 C -0.095 4.095 18 C -0.057 4.057 19 C -0.033 4.033 20 N -0.151 5.151 21 C -0.090 4.090 22 H 0.049 0.951 23 H 0.084 0.916 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.186 0.814 34 H 0.171 0.829 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.997 2.894 -10.133 13.229 hybrid contribution -0.630 -0.010 1.548 1.671 sum 7.367 2.884 -8.585 11.674 Atomic orbital electron populations 1.21986 0.97927 0.99847 0.99944 1.20656 0.92372 0.92804 0.89021 1.22031 1.00302 0.97431 1.00426 1.44002 1.52846 1.32088 1.01364 1.18908 1.39299 0.90787 0.87811 0.93393 1.25486 0.99509 0.96742 1.00328 1.70066 1.48139 1.05447 1.31581 0.85979 0.77853 0.77172 0.83704 1.21141 1.22215 1.20651 1.19864 0.84107 0.90007 1.00923 1.20929 0.97446 0.98023 0.92723 1.21545 0.95358 0.95770 0.97293 1.21395 0.93578 0.99016 0.98887 1.21330 1.00900 0.97441 0.89812 1.16128 0.92608 1.09159 0.87806 1.26142 0.92213 0.92021 0.92893 1.81176 1.11227 1.11235 1.11418 1.20941 0.91877 0.97542 0.98682 0.95074 0.91609 0.95388 0.91168 0.93524 0.91394 0.95112 0.94168 0.93207 0.91672 0.83963 0.81398 0.82860 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.06 71.99 0.65 -4.42 16 2 C 0.16 5.67 3.36 44.99 0.15 5.82 16 3 C -0.14 -4.61 9.16 71.98 0.66 -3.95 16 4 N -0.58 -25.61 2.34 -682.36 -1.60 -27.21 16 5 C -0.24 -12.03 8.27 84.03 0.69 -11.33 16 6 H 0.05 2.52 6.92 -2.91 -0.02 2.50 16 7 C -0.02 -1.22 4.95 84.86 0.42 -0.80 16 8 N -0.91 -50.40 11.52 21.65 0.25 -50.15 16 9 Si 0.92 44.43 29.60 68.60 2.03 46.46 16 10 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 13 C 0.18 7.30 5.38 85.63 0.46 7.76 16 14 C -0.09 -3.04 5.46 -19.90 -0.11 -3.14 16 15 C -0.08 -2.03 9.69 22.33 0.22 -1.81 16 16 C -0.11 -2.18 10.03 22.23 0.22 -1.96 16 17 C -0.07 -1.66 9.76 22.54 0.22 -1.44 16 18 C -0.05 -1.64 5.73 -21.36 -0.12 -1.76 16 19 C 0.28 9.50 15.33 88.33 1.35 10.85 16 20 N -0.47 -17.66 18.54 19.00 0.35 -17.31 16 21 C -0.07 -2.51 9.41 22.54 0.21 -2.29 16 22 H 0.03 1.25 7.82 -2.39 -0.02 1.23 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 2.21 7.79 -2.39 -0.02 2.19 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.03 1.11 7.06 -2.39 -0.02 1.10 16 29 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 30 H 0.05 1.88 7.85 -2.39 -0.02 1.86 16 31 H 0.07 3.23 5.51 -2.39 -0.01 3.21 16 32 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.09 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -60.80 304.96 7.14 -53.66 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.07 Total: 3.02 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 5.03 Total: -8.48 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -1.00 Total: -94.67 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -60.80 7.14 -53.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070216230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.104 kcal (2) G-P(sol) polarization free energy of solvation -60.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.12 seconds