Wall clock time and date at job start Mon Mar 30 2020 07:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46903 * 109.46909 * 2 1 4 4 C 1.46901 * 110.99860 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47172 * 180.02562 * 4 3 2 6 6 C 1.37819 * 120.17162 * 259.73122 * 5 4 3 7 7 C 1.38708 * 120.36016 * 179.76017 * 6 5 4 8 8 C 1.37937 * 120.64745 * 0.49468 * 7 6 5 9 9 C 1.38916 * 119.92254 * 359.76559 * 8 7 6 10 10 C 1.39472 * 120.16812 * 80.00237 * 5 4 3 11 11 C 1.46670 * 133.97659 * 359.97438 * 10 5 4 12 12 C 1.34304 * 107.04991 * 180.02562 * 11 10 5 13 13 N 1.37000 * 109.94371 * 359.97438 * 12 11 10 14 14 C 1.37198 * 125.09137 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00277 * 158.97554 * 14 13 12 16 16 C 1.38859 * 120.00093 * 338.97527 * 14 13 12 17 17 N 1.31438 * 119.99499 * 349.13587 * 16 14 13 18 18 Si 1.86792 * 120.00021 * 169.14008 * 16 14 13 19 19 H 1.48498 * 109.47471 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47200 * 120.00279 * 18 16 14 21 21 H 1.48506 * 109.47097 * 239.99686 * 18 16 14 22 22 H 1.09000 * 109.46716 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47088 * 299.99463 * 1 2 3 24 24 H 1.08995 * 109.47024 * 59.99827 * 1 2 3 25 25 H 1.09000 * 109.47088 * 240.00537 * 2 1 3 26 26 H 1.08995 * 109.47024 * 120.00173 * 2 1 3 27 27 H 1.00902 * 110.99564 * 56.04760 * 3 2 1 28 28 H 1.09004 * 109.47338 * 300.00712 * 4 3 2 29 29 H 1.09004 * 109.47078 * 60.00066 * 4 3 2 30 30 H 1.07996 * 119.82373 * 359.97438 * 6 5 4 31 31 H 1.08000 * 119.67464 * 180.23860 * 7 6 5 32 32 H 1.08000 * 120.03892 * 179.78206 * 8 7 6 33 33 H 1.07990 * 126.47199 * 359.97438 * 11 10 5 34 34 H 1.08003 * 125.02458 * 179.97438 * 12 11 10 35 35 H 0.97006 * 119.99767 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 6 3.9524 2.8580 0.0012 6 6 4.3683 3.4519 -1.1708 7 6 4.7917 4.7727 -1.1756 8 6 4.8131 5.5085 -0.0091 9 6 4.4030 4.9275 1.1843 10 6 3.9687 3.5889 1.1890 11 6 3.6112 3.2829 2.5781 12 6 3.8375 4.3945 3.2970 13 7 4.3116 5.3891 2.4828 14 6 4.6443 6.6546 2.8953 15 1 5.3101 7.2598 2.2979 16 6 4.1251 7.1574 4.0810 17 7 3.1568 6.5175 4.6978 18 14 4.8026 8.7431 4.7991 19 1 5.8794 9.2645 3.9195 20 1 3.7132 9.7478 4.8960 21 1 5.3531 8.4780 6.1526 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6441 1.9013 0.7814 28 1 3.8647 0.9203 0.8908 29 1 3.8654 0.9202 -0.8892 30 1 4.3613 2.8869 -2.0912 31 1 5.1117 5.2283 -2.1011 32 1 5.1479 6.5352 -0.0235 33 1 3.2360 2.3418 2.9520 34 1 3.6703 4.4901 4.3597 35 1 2.7942 6.8685 5.5263 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070634791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:56 Heat of formation + Delta-G solvation = 33.993471 kcal Electronic energy + Delta-G solvation = -17003.477950 eV Core-core repulsion = 14386.583627 eV Total energy + Delta-G solvation = -2616.894322 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80229 -38.42428 -36.88717 -35.00045 -33.34229 -31.56340 -29.94820 -29.24050 -26.73784 -25.54189 -22.88799 -22.42787 -22.22937 -21.45417 -18.92793 -17.52819 -17.07818 -16.54820 -16.27195 -15.92770 -15.83822 -15.13045 -15.03938 -14.89978 -14.13009 -13.77641 -13.56188 -13.24750 -13.14558 -12.92379 -12.79571 -12.62555 -12.44113 -12.19555 -12.17911 -11.95993 -11.89987 -11.37098 -11.05692 -10.25985 -9.29981 -8.83548 -8.71216 -8.34748 -6.24403 0.47140 1.01646 1.34952 1.39722 1.51157 2.09883 2.22554 2.88992 3.06557 3.19616 3.62007 4.01997 4.20222 4.31184 4.39534 4.40513 4.56027 4.64251 4.66439 4.74792 4.76938 4.88103 5.00905 5.07970 5.15293 5.30461 5.35481 5.36962 5.39879 5.47843 5.77677 5.84237 5.99852 6.16130 6.31207 6.44469 6.47631 6.57458 7.14958 7.56385 8.42631 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.006090 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.015676 B = 4596.790884 C = 5313.879016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.694 5.694 4 C 0.116 3.884 5 C -0.055 4.055 6 C -0.149 4.149 7 C -0.122 4.122 8 C -0.136 4.136 9 C 0.018 3.982 10 C -0.125 4.125 11 C -0.279 4.279 12 C 0.057 3.943 13 N -0.314 5.314 14 C -0.373 4.373 15 H 0.103 0.897 16 C 0.000 4.000 17 N -0.885 5.885 18 Si 1.012 2.988 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.266 1.266 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.028 0.972 27 H 0.337 0.663 28 H 0.030 0.970 29 H 0.091 0.909 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 -7.512 -6.364 9.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.325 5.325 4 C -0.012 4.012 5 C -0.056 4.056 6 C -0.169 4.169 7 C -0.141 4.141 8 C -0.156 4.156 9 C -0.093 4.093 10 C -0.131 4.131 11 C -0.304 4.304 12 C -0.077 4.077 13 N 0.021 4.979 14 C -0.500 4.500 15 H 0.121 0.879 16 C -0.204 4.204 17 N -0.518 5.518 18 Si 0.832 3.168 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.191 1.191 22 H 0.096 0.904 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.046 0.954 27 H 0.154 0.846 28 H 0.048 0.952 29 H 0.110 0.890 30 H 0.159 0.841 31 H 0.162 0.838 32 H 0.123 0.877 33 H 0.157 0.843 34 H 0.174 0.826 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.662 -7.102 -6.722 9.801 hybrid contribution 0.263 0.727 1.759 1.921 sum -0.399 -6.375 -4.964 8.089 Atomic orbital electron populations 1.21742 0.94252 1.02464 1.01912 1.22015 0.96343 0.88615 1.00732 1.60631 1.07273 1.14272 1.50303 1.20668 0.87941 0.91817 1.00811 1.19289 0.99531 0.95624 0.91168 1.20831 1.03586 0.95292 0.97189 1.20888 1.01981 0.94638 0.96609 1.20137 1.05002 0.99632 0.90876 1.18968 1.07895 0.95854 0.86555 1.19124 1.06248 0.93515 0.94172 1.21380 1.18106 0.98999 0.91936 1.22079 1.01454 0.86870 0.97314 1.40392 1.44349 1.09181 1.03932 1.20183 1.29712 0.91286 1.08825 0.87923 1.26480 0.94094 1.03399 0.96476 1.69999 1.22515 1.41431 1.17870 0.84619 0.78463 0.75397 0.78314 1.18157 1.19501 1.19102 0.90377 0.93516 0.92379 0.90160 0.95389 0.84575 0.95229 0.89034 0.84147 0.83763 0.87657 0.84342 0.82644 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 10.17 71.98 0.73 -2.24 16 2 C 0.05 1.19 6.41 86.30 0.55 1.74 16 3 N -0.69 -20.81 6.49 -517.91 -3.36 -24.17 16 4 C 0.12 3.62 5.73 85.56 0.49 4.11 16 5 C -0.06 -2.13 5.42 -19.67 -0.11 -2.24 16 6 C -0.15 -5.23 9.66 22.28 0.22 -5.02 16 7 C -0.12 -4.44 10.02 22.31 0.22 -4.22 16 8 C -0.14 -6.05 9.95 22.36 0.22 -5.83 16 9 C 0.02 0.90 6.75 38.92 0.26 1.16 16 10 C -0.12 -5.83 6.16 -20.17 -0.12 -5.95 16 11 C -0.28 -13.25 10.95 23.57 0.26 -12.99 16 12 C 0.06 3.04 9.89 82.99 0.82 3.86 16 13 N -0.31 -17.39 2.92 -342.89 -1.00 -18.39 16 14 C -0.37 -20.46 9.93 84.00 0.83 -19.63 16 15 H 0.10 5.41 7.85 -2.91 -0.02 5.39 16 16 C 0.00 0.00 5.35 84.90 0.45 0.45 16 17 N -0.89 -47.44 10.85 21.65 0.23 -47.21 16 18 Si 1.01 39.66 29.56 68.60 2.03 41.69 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 22 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.34 11.30 8.72 -89.69 -0.78 10.52 16 28 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.09 2.42 8.00 -2.39 -0.02 2.40 16 30 H 0.14 3.92 8.03 -2.91 -0.02 3.90 16 31 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 32 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.14 5.74 8.06 -2.92 -0.02 5.71 16 34 H 0.16 8.45 6.34 -2.91 -0.02 8.43 16 35 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -61.13 297.80 3.03 -58.09 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.30 Total: 36.77 kcal Atomic # 6 Polarization: -51.62 SS G_CDS: 4.84 Total: -46.78 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -4.13 Total: -89.77 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -61.13 3.03 -58.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070634791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.086 kcal (2) G-P(sol) polarization free energy of solvation -61.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds