Wall clock time and date at job start Mon Mar 30 2020 06:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47098 * 2 1 4 4 N 1.46908 * 109.46897 * 119.99495 * 2 1 3 5 5 C 1.52995 * 109.47345 * 239.99477 * 2 1 3 6 6 C 1.50701 * 109.47139 * 175.00424 * 5 2 1 7 7 C 1.37823 * 120.17130 * 265.00459 * 6 5 2 8 8 C 1.38700 * 120.36297 * 179.97438 * 7 6 5 9 9 C 1.37947 * 120.64973 * 0.03988 * 8 7 6 10 10 C 1.38912 * 119.91942 * 359.97438 * 9 8 7 11 11 C 1.39470 * 120.17517 * 84.72519 * 6 5 2 12 12 C 1.46670 * 133.96669 * 0.70465 * 11 6 5 13 13 C 1.34296 * 107.05667 * 179.52143 * 12 11 6 14 14 N 1.37009 * 109.93617 * 359.76451 * 13 12 11 15 15 C 1.37200 * 125.08810 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00200 * 158.98516 * 15 14 13 17 17 C 1.38858 * 119.99988 * 338.98578 * 15 14 13 18 18 N 1.31437 * 120.00099 * 349.14601 * 17 15 14 19 19 Si 1.86803 * 119.99890 * 169.15171 * 17 15 14 20 20 H 1.48501 * 109.47212 * 59.99921 * 19 17 15 21 21 H 1.48503 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47140 * 299.99853 * 19 17 15 23 23 H 1.09002 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46663 * 60.00021 * 1 2 3 25 25 H 1.09005 * 109.47399 * 300.00312 * 1 2 3 26 26 H 1.00905 * 110.99226 * 59.99955 * 4 2 1 27 27 H 1.00893 * 111.00102 * 183.95528 * 4 2 1 28 28 H 1.08994 * 109.47255 * 295.00399 * 5 2 1 29 29 H 1.08999 * 109.47093 * 55.00260 * 5 2 1 30 30 H 1.08005 * 119.82001 * 359.96920 * 7 6 5 31 31 H 1.08002 * 119.67715 * 180.02562 * 8 7 6 32 32 H 1.07998 * 120.04129 * 180.02562 * 9 8 7 33 33 H 1.08001 * 126.46878 * 359.28631 * 12 11 6 34 34 H 1.07997 * 125.02954 * 179.78641 * 13 12 11 35 35 H 0.96996 * 119.99948 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0400 -0.7213 -1.2491 6 6 3.5420 -0.6151 -1.3125 7 6 4.1350 0.3861 -2.0511 8 6 5.5169 0.4879 -2.1118 9 6 6.3185 -0.4090 -1.4365 10 6 5.7412 -1.4258 -0.6865 11 6 4.3391 -1.5257 -0.6193 12 6 4.0550 -2.6853 0.2327 13 6 5.2382 -3.1888 0.6200 14 7 6.2589 -2.4502 0.0818 15 6 7.5953 -2.6920 0.2768 16 1 8.3219 -2.3041 -0.4218 17 6 8.0137 -3.4355 1.3724 18 7 7.1645 -3.7258 2.3326 19 14 9.7837 -4.0229 1.4816 20 1 10.6956 -2.8508 1.4739 21 1 9.9738 -4.7905 2.7385 22 1 10.0885 -4.8948 0.3188 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 0.5139 0.8900 26 1 1.6960 -1.6479 1.2229 27 1 3.0261 -0.6500 1.2561 28 1 1.7517 -1.7715 -1.2054 29 1 1.6055 -0.2619 -2.1369 30 1 3.5202 1.0952 -2.5857 31 1 5.9699 1.2771 -2.6936 32 1 7.3935 -0.3203 -1.4902 33 1 3.0786 -3.0607 0.5013 34 1 5.3661 -4.0488 1.2606 35 1 7.4567 -4.2455 3.0977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070634813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:11 Heat of formation + Delta-G solvation = 40.598861 kcal Electronic energy + Delta-G solvation = -17417.540749 eV Core-core repulsion = 14800.932858 eV Total energy + Delta-G solvation = -2616.607891 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.16255 -37.15316 -35.40375 -33.19376 -31.22948 -29.63219 -28.47804 -27.87276 -25.50399 -24.87961 -21.18063 -20.66064 -20.38780 -19.43678 -17.20610 -15.74016 -15.56702 -15.17161 -14.72012 -14.45331 -13.97373 -13.81307 -13.34098 -13.06638 -12.81308 -12.18502 -11.87804 -11.74324 -11.69482 -11.35458 -11.29011 -11.25271 -10.85539 -10.71524 -10.68091 -10.42769 -10.33030 -9.75423 -9.25064 -8.50454 -8.20238 -7.11892 -6.89302 -6.56950 -4.32904 2.11278 2.62005 2.99466 3.01334 3.03685 3.78090 4.01856 4.66471 4.81077 4.98261 5.09992 5.26105 5.43083 5.66938 5.76965 5.81530 5.92281 5.96454 6.08200 6.21552 6.27582 6.36698 6.39875 6.44866 6.56067 6.89194 7.02464 7.05712 7.09919 7.17569 7.45340 7.56621 7.60929 7.73476 7.96888 8.03553 8.13959 8.43494 8.96849 9.39289 10.25119 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032631 B = 0.006783 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.886205 B = 4126.713677 C = 4788.194719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.844 5.844 5 C -0.105 4.105 6 C -0.055 4.055 7 C -0.168 4.168 8 C -0.136 4.136 9 C -0.111 4.111 10 C 0.054 3.946 11 C -0.112 4.112 12 C -0.287 4.287 13 C 0.088 3.912 14 N -0.289 5.289 15 C -0.342 4.342 16 H 0.104 0.896 17 C 0.043 3.957 18 N -0.852 5.852 19 Si 0.939 3.061 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.268 1.268 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.334 0.666 27 H 0.356 0.644 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.169 0.831 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 2.983 -3.892 7.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 H 0.092 0.908 4 N -0.376 5.376 5 C -0.144 4.144 6 C -0.055 4.055 7 C -0.187 4.187 8 C -0.156 4.156 9 C -0.131 4.131 10 C -0.058 4.058 11 C -0.118 4.118 12 C -0.311 4.311 13 C -0.047 4.047 14 N 0.049 4.951 15 C -0.469 4.469 16 H 0.122 0.878 17 C -0.165 4.165 18 N -0.484 5.484 19 Si 0.764 3.236 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.192 1.192 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.146 0.854 27 H 0.172 0.828 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.186 0.814 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.648 3.327 -3.171 7.282 hybrid contribution 1.455 -0.932 -0.537 1.810 sum -4.193 2.395 -3.708 6.088 Atomic orbital electron populations 1.21812 0.95332 1.01535 1.01317 1.21368 0.94184 0.98176 0.88184 0.90795 1.59131 1.18426 1.20772 1.39223 1.21290 0.92851 1.01036 0.99206 1.18982 0.93488 0.95227 0.97851 1.20357 0.94311 1.00005 1.04060 1.20401 0.93430 0.99712 1.02073 1.19875 0.98511 0.95196 0.99488 1.18354 0.92574 0.93265 1.01581 1.18805 0.91821 0.98564 1.02603 1.21183 0.96563 1.02162 1.11212 1.22091 0.85360 0.97740 0.99485 1.40216 1.05328 1.17481 1.32107 1.19780 0.81294 1.35419 1.10434 0.87841 1.25480 1.01073 0.96291 0.93704 1.69873 1.36071 1.34615 1.07817 0.85790 0.80318 0.79253 0.78260 1.19285 1.20208 1.19249 0.93069 0.92789 0.92294 0.85389 0.82849 0.91681 0.91950 0.87987 0.87624 0.87748 0.86173 0.81350 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.49 37.16 0.35 -1.40 16 2 C 0.09 1.40 3.40 -67.71 -0.23 1.17 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 4 N -0.84 -14.08 8.61 -4.66 -0.04 -14.12 16 5 C -0.10 -1.66 4.93 -27.89 -0.14 -1.80 16 6 C -0.05 -1.06 4.88 -104.31 -0.51 -1.57 16 7 C -0.17 -3.11 9.67 -39.56 -0.38 -3.50 16 8 C -0.14 -2.61 10.02 -39.52 -0.40 -3.00 16 9 C -0.11 -2.41 9.95 -39.44 -0.39 -2.81 16 10 C 0.05 1.30 6.75 -83.84 -0.57 0.74 16 11 C -0.11 -2.49 4.95 -105.09 -0.52 -3.01 16 12 C -0.29 -6.30 9.28 -37.57 -0.35 -6.65 16 13 C 0.09 2.17 9.89 -16.63 -0.16 2.01 16 14 N -0.29 -7.45 2.92 -59.73 -0.17 -7.62 16 15 C -0.34 -8.84 9.93 -14.92 -0.15 -8.99 16 16 H 0.10 2.56 7.85 -52.49 -0.41 2.15 16 17 C 0.04 1.06 5.35 -17.49 -0.09 0.96 16 18 N -0.85 -21.68 10.84 55.49 0.60 -21.08 16 19 Si 0.94 18.86 29.57 -169.99 -5.03 13.83 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.33 5.29 7.88 -39.29 -0.31 4.98 16 27 H 0.36 6.90 6.36 -39.30 -0.25 6.65 16 28 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 29 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 30 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.12 2.33 7.05 -52.49 -0.37 1.96 16 34 H 0.17 4.20 6.34 -52.49 -0.33 3.87 16 35 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 288.39 15.07 4.35 4.35 Total: -1.00 -26.36 288.39 -8.43 -34.80 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -4.60 Total: 17.69 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -3.54 Total: -27.85 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.39 Total: -42.82 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.36 -8.43 -34.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070634813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.396 kcal (2) G-P(sol) polarization free energy of solvation -26.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds