Wall clock time and date at job start Mon Mar 30 2020 06:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.37850 * 126.53633 * 90.02950 * 4 3 2 6 6 C 1.40196 * 125.30581 * 359.95261 * 5 4 3 7 7 H 1.07999 * 119.99305 * 0.02562 * 6 5 4 8 8 C 1.40341 * 120.00035 * 180.02562 * 6 5 4 9 9 N 1.30587 * 120.00251 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99991 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47281 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47134 * 120.00040 * 10 8 6 13 13 H 1.48494 * 109.47357 * 240.00075 * 10 8 6 14 14 N 1.32468 * 109.39221 * 179.97438 * 5 4 3 15 15 C 1.33966 * 109.77776 * 359.97438 * 14 5 4 16 16 C 1.40543 * 133.19543 * 179.97438 * 15 14 5 17 17 C 1.36357 * 119.84914 * 179.29421 * 16 15 14 18 18 C 1.50697 * 119.61996 * 180.21472 * 17 16 15 19 19 C 1.39041 * 120.75689 * 0.58609 * 17 16 15 20 20 C 1.37962 * 120.57450 * 359.65136 * 19 17 16 21 21 C 1.37958 * 126.54257 * 269.71235 * 4 3 2 22 22 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 23 23 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 24 24 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 26 26 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 27 27 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 28 28 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 29 29 H 0.96997 * 119.99885 * 180.02562 * 9 8 6 30 30 H 1.08006 * 120.07120 * 359.97438 * 16 15 14 31 31 H 1.08999 * 109.46957 * 270.36557 * 18 17 16 32 32 H 1.08998 * 109.47187 * 30.36364 * 18 17 16 33 33 H 1.08998 * 109.47102 * 150.36768 * 18 17 16 34 34 H 1.08000 * 119.71095 * 179.62814 * 19 17 16 35 35 H 1.08004 * 120.11735 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3251 1.4432 -1.1086 6 6 3.8877 1.4432 -2.4405 7 1 2.8305 1.4429 -2.6616 8 6 4.8234 1.4434 -3.4864 9 7 6.1016 1.4432 -3.2191 10 14 4.2405 1.4441 -5.2612 11 1 2.7559 1.4449 -5.2946 12 1 4.7513 2.6567 -5.9495 13 1 4.7509 0.2318 -5.9503 14 7 5.5911 1.4435 -0.7186 15 6 5.6532 1.4436 0.6196 16 6 6.7213 1.4434 1.5331 17 6 6.4685 1.4581 2.8729 18 6 7.6177 1.4627 3.8477 19 6 5.1625 1.4611 3.3501 20 6 4.0958 1.4565 2.4753 21 6 4.3268 1.4479 1.1074 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 6.7483 1.4438 -3.9420 30 1 7.7401 1.4427 1.1745 31 1 7.8943 0.4362 4.0881 32 1 8.4707 1.9738 3.4014 33 1 7.3193 1.9814 4.7587 34 1 4.9817 1.4667 4.4148 35 1 3.0843 1.4585 2.8540 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071745001.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:29 Heat of formation + Delta-G solvation = 44.616221 kcal Electronic energy + Delta-G solvation = -17265.773160 eV Core-core repulsion = 14649.339474 eV Total energy + Delta-G solvation = -2616.433685 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37241 -36.66349 -34.71526 -33.53163 -31.43798 -30.71471 -28.58718 -27.07977 -25.70450 -24.49164 -21.45894 -21.26270 -20.02867 -19.39269 -16.91913 -16.06519 -15.83940 -14.67384 -14.46381 -14.15294 -14.05698 -13.26914 -13.04220 -12.89417 -12.83548 -12.45765 -11.90222 -11.73577 -11.59237 -11.38600 -11.33986 -11.11885 -10.99129 -10.60065 -10.45135 -10.26309 -10.18484 -10.15523 -9.26469 -8.95225 -7.88212 -7.12218 -6.80598 -6.66498 -4.60928 2.27467 2.68243 2.98504 3.02427 3.06740 3.79417 4.08420 4.14766 4.92172 5.22380 5.30440 5.49746 5.54249 5.62970 5.66086 5.70315 5.91686 5.95391 6.03496 6.05977 6.16422 6.17332 6.34090 6.36406 6.45106 6.56631 6.61011 6.80869 6.90829 7.01701 7.24186 7.51008 7.67080 7.76908 7.94555 8.01469 8.34225 8.65431 9.05044 9.97491 10.22841 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.008585 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.929560 B = 3260.884558 C = 4631.624938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.133 3.867 4 N -0.539 5.539 5 C 0.420 3.580 6 C -0.440 4.440 7 H 0.087 0.913 8 C 0.077 3.923 9 N -0.716 5.716 10 Si 0.917 3.083 11 H -0.260 1.260 12 H -0.271 1.271 13 H -0.271 1.271 14 N -0.537 5.537 15 C 0.111 3.889 16 C -0.127 4.127 17 C -0.096 4.096 18 C -0.099 4.099 19 C -0.178 4.178 20 C -0.101 4.101 21 C -0.006 4.006 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.278 0.722 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 -0.812 4.518 7.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.009 3.991 4 N -0.235 5.235 5 C 0.183 3.817 6 C -0.478 4.478 7 H 0.105 0.895 8 C -0.150 4.150 9 N -0.338 5.338 10 Si 0.740 3.260 11 H -0.184 1.184 12 H -0.197 1.197 13 H -0.196 1.196 14 N -0.260 5.260 15 C -0.017 4.017 16 C -0.148 4.148 17 C -0.099 4.099 18 C -0.156 4.156 19 C -0.199 4.199 20 C -0.122 4.122 21 C -0.114 4.114 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.884 -0.803 3.866 6.280 hybrid contribution -1.055 -0.031 -0.233 1.081 sum -5.939 -0.833 3.633 7.011 Atomic orbital electron populations 1.21686 0.95591 1.01505 1.01575 1.21918 0.95352 0.97694 1.02992 1.21290 0.79063 0.96568 1.02165 1.45538 1.04685 1.67813 1.05451 1.20459 0.83304 0.90434 0.87462 1.18522 0.94650 1.47842 0.86776 0.89498 1.25863 0.94399 0.93494 1.01277 1.69988 1.01500 1.28197 1.34131 0.86127 0.80070 0.78746 0.81037 1.18407 1.19651 1.19649 1.71390 1.15992 1.32627 1.05998 1.19545 0.90917 0.98621 0.92584 1.19602 0.96656 1.07771 0.90807 1.18982 0.94020 1.03446 0.93442 1.20615 0.96435 1.00967 0.97597 1.20146 0.91610 1.10882 0.97251 1.19568 0.97620 1.05412 0.89650 1.18886 0.92605 1.11108 0.88785 0.92998 0.92572 0.92762 0.91008 0.92107 0.90140 0.91651 0.91053 0.87475 0.92505 0.92516 0.92731 0.87900 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.14 -2.31 6.26 -26.73 -0.17 -2.48 16 3 C 0.13 2.46 5.90 -4.04 -0.02 2.44 16 4 N -0.54 -12.85 2.86 -113.48 -0.32 -13.18 16 5 C 0.42 11.44 7.41 -155.67 -1.15 10.28 16 6 C -0.44 -11.32 8.99 -38.06 -0.34 -11.67 16 7 H 0.09 2.03 7.10 -52.49 -0.37 1.66 16 8 C 0.08 1.91 5.50 -17.29 -0.10 1.82 16 9 N -0.72 -19.16 11.85 55.57 0.66 -18.50 16 10 Si 0.92 18.00 29.56 -169.99 -5.03 12.97 16 11 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 12 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 13 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 14 N -0.54 -15.65 9.33 -10.31 -0.10 -15.75 16 15 C 0.11 2.96 7.21 -84.89 -0.61 2.35 16 16 C -0.13 -2.98 9.69 -39.39 -0.38 -3.36 16 17 C -0.10 -1.94 5.84 -105.00 -0.61 -2.55 16 18 C -0.10 -1.54 9.98 36.00 0.36 -1.18 16 19 C -0.18 -3.49 9.68 -39.38 -0.38 -3.87 16 20 C -0.10 -2.12 10.04 -39.50 -0.40 -2.52 16 21 C -0.01 -0.16 6.88 -83.75 -0.58 -0.73 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 1.43 7.32 -51.93 -0.38 1.05 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.28 6.69 8.29 -40.82 -0.34 6.35 16 30 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 298.25 15.07 4.49 4.49 Total: -1.00 -30.33 298.25 -9.26 -39.59 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -4.95 Total: 3.28 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -4.02 Total: -12.91 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.24 Total: -47.42 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.33 -9.26 -39.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071745001.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.208 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds