Wall clock time and date at job start Mon Mar 30 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.37850 * 126.53633 * 90.02950 * 5 4 3 7 7 C 1.40190 * 125.30647 * 359.95886 * 6 5 4 8 8 H 1.08004 * 119.99770 * 0.02562 * 7 6 5 9 9 C 1.40345 * 120.00423 * 179.97438 * 7 6 5 10 10 N 1.30587 * 119.99815 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00348 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46883 * 90.00017 * 11 9 7 13 13 H 1.48491 * 109.47157 * 210.00334 * 11 9 7 14 14 H 1.48500 * 109.46973 * 330.00773 * 11 9 7 15 15 N 1.32468 * 109.39444 * 179.97438 * 6 5 4 16 16 C 1.33972 * 109.77694 * 359.97438 * 15 6 5 17 17 C 1.40540 * 133.19506 * 179.97438 * 16 15 6 18 18 C 1.36357 * 119.84760 * 180.02562 * 17 16 15 19 19 C 1.39043 * 120.75990 * 359.97438 * 18 17 16 20 20 C 1.37962 * 120.57274 * 0.02562 * 19 18 17 21 21 C 1.37958 * 126.54257 * 269.71235 * 5 4 3 22 22 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 24 24 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 25 25 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 26 26 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 27 27 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 28 28 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 29 29 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 31 31 H 0.97005 * 119.99754 * 179.97438 * 10 9 7 32 32 H 1.07993 * 120.07700 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.61660 * 180.02562 * 18 17 16 34 34 H 1.08003 * 119.71010 * 180.02562 * 19 18 17 35 35 H 1.08002 * 120.11421 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3327 3.5966 1.1079 7 6 4.1876 3.1840 2.4398 8 1 3.8352 2.1873 2.6610 9 6 4.5011 4.0656 3.4858 10 7 4.9276 5.2706 3.2184 11 14 4.3084 3.5155 5.2606 12 1 5.5770 2.9023 5.7292 13 1 3.9824 4.6891 6.1099 14 1 3.2125 2.5177 5.3532 15 7 4.7548 4.7902 0.7180 16 6 4.7750 4.8490 -0.6203 17 6 5.1304 5.8562 -1.5337 18 6 5.0452 5.6181 -2.8736 19 6 4.6100 4.3868 -3.3508 20 6 4.2550 3.3808 -2.4759 21 6 4.3368 3.5970 -1.1080 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9337 0.9285 0.8891 30 1 3.9329 0.9289 -0.8909 31 1 5.1440 5.8800 3.9414 32 1 5.4695 6.8169 -1.1752 33 1 5.3196 6.3947 -3.5722 34 1 4.5494 4.2164 -4.4156 35 1 3.9176 2.4273 -2.8547 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075622941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:59 Heat of formation + Delta-G solvation = 44.417435 kcal Electronic energy + Delta-G solvation = -17235.792134 eV Core-core repulsion = 14619.349828 eV Total energy + Delta-G solvation = -2616.442305 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36219 -36.30595 -35.31518 -33.50259 -32.28192 -29.63533 -28.68774 -27.63431 -25.82123 -23.45525 -21.34056 -20.96795 -20.60842 -19.37152 -16.94378 -16.21115 -15.82584 -15.10569 -14.81038 -14.35624 -14.02234 -13.20064 -13.18903 -13.02827 -12.69540 -12.54295 -12.22037 -11.55384 -11.39705 -11.30633 -11.28337 -10.98776 -10.86905 -10.60017 -10.46403 -10.38949 -10.24532 -10.15728 -9.33081 -8.96780 -7.88835 -7.21800 -6.83710 -6.66795 -4.61529 2.27003 2.72875 2.99246 3.02015 3.05411 3.78757 4.06422 4.15529 4.93603 5.09391 5.15371 5.27178 5.44419 5.53954 5.66677 5.82095 5.86931 5.88761 5.93466 5.94787 6.03100 6.09318 6.26087 6.39526 6.43537 6.57092 6.61826 6.75137 6.89257 7.00840 7.27707 7.49239 7.63037 7.75768 7.93265 8.00727 8.33795 8.64837 9.04312 9.96800 10.22471 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.010243 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.227633 B = 2732.872998 C = 4543.375227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.136 4.136 4 C 0.133 3.867 5 N -0.539 5.539 6 C 0.420 3.580 7 C -0.440 4.440 8 H 0.087 0.913 9 C 0.077 3.923 10 N -0.716 5.716 11 Si 0.917 3.083 12 H -0.268 1.268 13 H -0.274 1.274 14 H -0.261 1.261 15 N -0.537 5.537 16 C 0.108 3.892 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.183 4.183 20 C -0.103 4.103 21 C -0.004 4.004 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.279 0.721 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 -7.048 -3.275 8.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.174 4.174 4 C 0.009 3.991 5 N -0.234 5.234 6 C 0.184 3.816 7 C -0.478 4.478 8 H 0.105 0.895 9 C -0.150 4.150 10 N -0.338 5.338 11 Si 0.740 3.260 12 H -0.193 1.193 13 H -0.199 1.199 14 H -0.185 1.185 15 N -0.260 5.260 16 C -0.020 4.020 17 C -0.151 4.151 18 C -0.145 4.145 19 C -0.203 4.203 20 C -0.125 4.125 21 C -0.111 4.111 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.984 -6.309 -2.618 7.908 hybrid contribution -0.341 -0.932 0.177 1.008 sum -4.325 -7.241 -2.441 8.780 Atomic orbital electron populations 1.21749 0.95967 1.01118 1.01930 1.21450 0.95838 0.96741 1.01785 1.22009 0.95809 0.96546 1.03072 1.21272 0.93630 0.82035 1.02161 1.45535 1.60516 1.11948 1.05440 1.20447 0.89625 0.84127 0.87448 1.18483 1.41966 1.00531 0.86778 0.89536 1.25863 0.93601 0.94303 1.01269 1.69980 1.25131 1.04474 1.34245 0.86180 0.79669 0.79306 0.80835 1.19272 1.19897 1.18514 1.71394 1.30768 1.17835 1.06012 1.19586 0.97960 0.91806 0.92623 1.19772 1.05933 0.97850 0.91502 1.20206 1.02968 0.96736 0.94583 1.20283 1.08409 0.94322 0.97319 1.19587 1.04679 0.98550 0.89662 1.18894 1.08767 0.94680 0.88800 0.93047 0.92635 0.92906 0.92277 0.91866 0.90965 0.92058 0.90145 0.91647 0.90989 0.87455 0.87864 0.87913 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.50 5.93 -26.73 -0.16 -1.66 16 3 C -0.14 -2.21 5.54 -26.73 -0.15 -2.35 16 4 C 0.13 2.44 5.90 -4.04 -0.02 2.42 16 5 N -0.54 -12.78 2.86 -113.48 -0.32 -13.10 16 6 C 0.42 11.40 7.41 -155.68 -1.15 10.25 16 7 C -0.44 -11.28 8.99 -38.06 -0.34 -11.62 16 8 H 0.09 2.01 7.10 -52.48 -0.37 1.64 16 9 C 0.08 1.91 5.50 -17.29 -0.10 1.82 16 10 N -0.72 -19.14 11.85 55.57 0.66 -18.48 16 11 Si 0.92 17.97 29.56 -169.99 -5.03 12.94 16 12 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 13 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 14 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 15 N -0.54 -15.62 9.33 -10.31 -0.10 -15.72 16 16 C 0.11 2.88 7.21 -84.89 -0.61 2.26 16 17 C -0.13 -3.02 10.07 -39.39 -0.40 -3.42 16 18 C -0.12 -2.50 9.96 -39.96 -0.40 -2.90 16 19 C -0.18 -3.56 10.04 -39.38 -0.40 -3.96 16 20 C -0.10 -2.16 10.04 -39.50 -0.40 -2.56 16 21 C 0.00 -0.09 6.88 -83.75 -0.58 -0.67 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.42 7.32 -51.93 -0.38 1.04 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 32 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -30.12 298.38 -9.58 -39.70 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.96 Total: 3.90 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -4.33 Total: -13.73 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.24 Total: -47.31 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.12 -9.58 -39.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075622941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.114 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds