Wall clock time and date at job start Mon Mar 30 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.37850 * 126.53633 * 90.02950 * 5 4 3 7 7 C 1.40190 * 125.30647 * 359.95886 * 6 5 4 8 8 H 1.08004 * 119.99770 * 0.02562 * 7 6 5 9 9 C 1.40345 * 120.00423 * 179.97438 * 7 6 5 10 10 N 1.30587 * 119.99815 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00348 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46883 * 90.00017 * 11 9 7 13 13 H 1.48491 * 109.47157 * 210.00334 * 11 9 7 14 14 H 1.48500 * 109.46973 * 330.00773 * 11 9 7 15 15 N 1.32468 * 109.39444 * 179.97438 * 6 5 4 16 16 C 1.33972 * 109.77694 * 359.97438 * 15 6 5 17 17 C 1.40540 * 133.19506 * 179.97438 * 16 15 6 18 18 C 1.36357 * 119.84760 * 180.02562 * 17 16 15 19 19 C 1.39043 * 120.75990 * 359.97438 * 18 17 16 20 20 C 1.37962 * 120.57274 * 0.02562 * 19 18 17 21 21 C 1.37958 * 126.54257 * 269.71235 * 5 4 3 22 22 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 24 24 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 25 25 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 26 26 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 27 27 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 28 28 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 29 29 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 31 31 H 0.97005 * 119.99754 * 179.97438 * 10 9 7 32 32 H 1.07993 * 120.07700 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.61660 * 180.02562 * 18 17 16 34 34 H 1.08003 * 119.71010 * 180.02562 * 19 18 17 35 35 H 1.08002 * 120.11421 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3327 3.5966 1.1079 7 6 4.1876 3.1840 2.4398 8 1 3.8352 2.1873 2.6610 9 6 4.5011 4.0656 3.4858 10 7 4.9276 5.2706 3.2184 11 14 4.3084 3.5155 5.2606 12 1 5.5770 2.9023 5.7292 13 1 3.9824 4.6891 6.1099 14 1 3.2125 2.5177 5.3532 15 7 4.7548 4.7902 0.7180 16 6 4.7750 4.8490 -0.6203 17 6 5.1304 5.8562 -1.5337 18 6 5.0452 5.6181 -2.8736 19 6 4.6100 4.3868 -3.3508 20 6 4.2550 3.3808 -2.4759 21 6 4.3368 3.5970 -1.1080 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9337 0.9285 0.8891 30 1 3.9329 0.9289 -0.8909 31 1 5.1440 5.8800 3.9414 32 1 5.4695 6.8169 -1.1752 33 1 5.3196 6.3947 -3.5722 34 1 4.5494 4.2164 -4.4156 35 1 3.9176 2.4273 -2.8547 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075622941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:58 Heat of formation + Delta-G solvation = 28.598206 kcal Electronic energy + Delta-G solvation = -17236.478107 eV Core-core repulsion = 14619.349828 eV Total energy + Delta-G solvation = -2617.128279 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15688 -37.93744 -36.71163 -35.30619 -33.84567 -31.24324 -30.48850 -29.11218 -27.64733 -24.80083 -23.13352 -22.39445 -22.08594 -21.12181 -18.79278 -17.90695 -17.50020 -16.55131 -16.29437 -15.92060 -15.66302 -14.72160 -14.65415 -14.46894 -14.42468 -13.94189 -13.51116 -13.24084 -13.02147 -12.82028 -12.60760 -12.33948 -12.23062 -12.09057 -12.05055 -11.92423 -11.75709 -11.50985 -11.07669 -10.75726 -9.81046 -9.03135 -8.62236 -8.50019 -6.54909 0.51166 1.01155 1.39907 1.44825 1.56190 2.14857 2.34512 2.42051 3.17942 3.61839 3.83843 3.91530 4.01181 4.20067 4.27292 4.31797 4.45680 4.48259 4.67372 4.73074 4.76094 4.90639 4.91952 4.98906 5.05001 5.17400 5.20702 5.27939 5.31835 5.43894 5.58292 5.68914 5.91925 5.98058 6.17238 6.24361 6.54379 6.78998 7.21358 8.08085 8.42868 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.010243 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.227633 B = 2732.872998 C = 4543.375227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.124 4.124 4 C 0.126 3.874 5 N -0.540 5.540 6 C 0.391 3.609 7 C -0.467 4.467 8 H 0.101 0.899 9 C 0.029 3.971 10 N -0.770 5.770 11 Si 0.999 3.001 12 H -0.260 1.260 13 H -0.270 1.270 14 H -0.248 1.248 15 N -0.587 5.587 16 C 0.049 3.951 17 C -0.149 4.149 18 C -0.117 4.117 19 C -0.163 4.163 20 C -0.106 4.106 21 C -0.021 4.021 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.283 0.717 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 -9.086 -4.836 11.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.162 4.162 4 C 0.004 3.996 5 N -0.235 5.235 6 C 0.152 3.848 7 C -0.504 4.504 8 H 0.119 0.881 9 C -0.193 4.193 10 N -0.394 5.394 11 Si 0.818 3.182 12 H -0.185 1.185 13 H -0.195 1.195 14 H -0.171 1.171 15 N -0.312 5.312 16 C -0.076 4.076 17 C -0.170 4.170 18 C -0.137 4.137 19 C -0.183 4.183 20 C -0.128 4.128 21 C -0.129 4.129 22 H 0.092 0.908 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.733 -8.371 -4.236 10.508 hybrid contribution -0.090 -0.255 0.393 0.477 sum -4.824 -8.626 -3.843 10.604 Atomic orbital electron populations 1.21747 0.94971 1.02431 1.01537 1.21422 0.96632 0.93917 1.03054 1.21889 0.94209 0.98929 1.01198 1.21620 0.94940 0.79701 1.03361 1.45734 1.59958 1.13318 1.04455 1.20800 0.90537 0.84651 0.88827 1.18921 1.43009 1.01550 0.86964 0.88067 1.26994 0.92310 0.93901 1.06108 1.70129 1.27066 1.06181 1.35977 0.84959 0.80082 0.79001 0.74136 1.18479 1.19502 1.17083 1.71243 1.32377 1.19708 1.07883 1.20148 1.00680 0.94239 0.92557 1.20057 1.06714 0.97352 0.92920 1.20667 1.01226 0.98256 0.93571 1.20900 1.04925 0.93045 0.99476 1.20046 1.04060 1.00470 0.88213 1.19318 1.09175 0.94126 0.90305 0.90843 0.93469 0.92960 0.90457 0.91102 0.93672 0.93086 0.89863 0.89365 0.90676 0.87992 0.83836 0.83187 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.91 71.98 0.71 -2.35 16 2 C -0.11 -2.56 5.93 30.59 0.18 -2.38 16 3 C -0.12 -3.95 5.54 30.59 0.17 -3.78 16 4 C 0.13 4.56 5.90 86.38 0.51 5.07 16 5 N -0.54 -26.19 2.86 -512.94 -1.46 -27.66 16 6 C 0.39 22.28 7.41 133.69 0.99 23.27 16 7 C -0.47 -24.92 8.99 23.26 0.21 -24.71 16 8 H 0.10 4.83 7.10 -2.91 -0.02 4.81 16 9 C 0.03 1.50 5.50 85.39 0.47 1.97 16 10 N -0.77 -43.51 11.85 21.89 0.26 -43.25 16 11 Si 1.00 37.60 29.56 68.60 2.03 39.63 16 12 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 13 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 14 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 15 N -0.59 -36.29 9.33 -186.52 -1.74 -38.03 16 16 C 0.05 2.73 7.21 40.14 0.29 3.02 16 17 C -0.15 -7.10 10.07 22.39 0.23 -6.87 16 18 C -0.12 -4.41 9.96 22.02 0.22 -4.19 16 19 C -0.16 -5.71 10.04 22.40 0.22 -5.49 16 20 C -0.11 -4.20 10.04 22.32 0.22 -3.98 16 21 C -0.02 -1.04 6.88 39.06 0.27 -0.77 16 22 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 2.93 7.32 -2.39 -0.02 2.91 16 30 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.28 14.41 8.29 -92.70 -0.77 13.64 16 32 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 33 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 34 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 35 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -70.57 298.38 4.84 -65.73 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 1.06 Total: 24.77 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 4.70 Total: -21.19 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -2.95 Total: -108.94 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -70.57 4.84 -65.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075622941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.325 kcal (2) G-P(sol) polarization free energy of solvation -70.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds