Wall clock time and date at job start Mon Mar 30 2020 07:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 110.99663 * 2 1 4 4 C 1.46902 * 110.99793 * 123.95266 * 2 1 3 5 5 C 1.47193 * 109.47095 * 175.46488 * 4 2 1 6 6 N 3.39312 * 157.12367 * 132.42917 * 2 1 3 7 7 C 1.53002 * 109.47266 * 295.46348 * 4 2 1 8 8 C 1.50699 * 109.47277 * 185.68950 * 7 4 2 9 9 H 1.08006 * 119.99673 * 353.63094 * 8 7 4 10 10 C 1.37871 * 120.00201 * 173.62579 * 8 7 4 11 11 N 1.31520 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00272 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47022 * 90.00018 * 12 10 8 14 14 H 1.48503 * 109.47458 * 210.00364 * 12 10 8 15 15 H 1.48509 * 109.47006 * 330.00540 * 12 10 8 16 16 C 1.50703 * 109.47237 * 55.46366 * 4 2 1 17 17 C 1.38241 * 119.99762 * 44.43860 * 16 4 2 18 18 C 1.38236 * 119.99746 * 180.02562 * 17 16 4 19 19 C 1.38226 * 120.00273 * 359.94777 * 18 17 16 20 20 C 1.38240 * 120.00122 * 0.28638 * 19 18 17 21 21 C 1.38231 * 120.00375 * 224.41335 * 16 4 2 22 22 H 1.09000 * 109.47556 * 296.04300 * 1 2 3 23 23 H 1.09000 * 109.47077 * 56.04831 * 1 2 3 24 24 H 1.09007 * 109.46976 * 176.04660 * 1 2 3 25 25 H 1.09001 * 109.46955 * 187.81209 * 3 2 1 26 26 H 1.09000 * 109.47596 * 307.81587 * 3 2 1 27 27 H 1.08999 * 109.47004 * 67.81677 * 3 2 1 28 28 H 1.08993 * 109.47074 * 305.69289 * 7 4 2 29 29 H 1.09004 * 109.46833 * 65.69405 * 7 4 2 30 30 H 0.97001 * 119.99890 * 179.97438 * 11 10 8 31 31 H 1.07999 * 119.99838 * 359.97410 * 17 16 4 32 32 H 1.08003 * 119.99229 * 179.97438 * 18 17 16 33 33 H 1.07998 * 120.00633 * 180.02562 * 19 18 17 34 34 H 1.07993 * 120.00650 * 179.72642 * 20 19 18 35 35 H 1.08000 * 119.99537 * 0.02562 * 21 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4628 -0.8360 1.0451 6 7 4.5953 -0.8899 0.9736 7 6 1.5992 -0.0757 2.4443 8 6 2.2546 -0.7808 3.6038 9 1 2.8056 -1.6949 3.4382 10 6 2.1510 -0.2590 4.8757 11 7 1.4797 0.8538 5.0773 12 14 2.9641 -1.1326 6.3128 13 1 4.3478 -0.6215 6.4841 14 1 2.1854 -0.8783 7.5515 15 1 3.0054 -2.5928 6.0451 16 6 1.4234 -2.1600 1.1124 17 6 1.3661 -2.8622 -0.0770 18 6 0.8410 -4.1407 -0.1003 19 6 0.3741 -4.7174 1.0659 20 6 0.4269 -4.0135 2.2545 21 6 0.9565 -2.7368 2.2786 22 1 -0.3634 0.4512 0.9233 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3633 -1.0253 -0.0709 25 1 3.0761 1.3458 -0.1397 26 1 1.5374 1.9365 -0.8118 27 1 1.7633 1.8496 0.9516 28 1 1.9258 0.9638 2.4196 29 1 0.5161 -0.1137 2.5613 30 1 1.4065 1.2208 5.9722 31 1 1.7309 -2.4115 -0.9882 32 1 0.7959 -4.6890 -1.0297 33 1 -0.0358 -5.7164 1.0479 34 1 0.0582 -4.4623 3.1649 35 1 1.0013 -2.1882 3.2078 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075622983.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:36 Heat of formation + Delta-G solvation = 70.338371 kcal Electronic energy + Delta-G solvation = -17874.294381 eV Core-core repulsion = 15258.976092 eV Total energy + Delta-G solvation = -2615.318289 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.79545 -37.25965 -35.07135 -33.44150 -31.53036 -30.39462 -28.68551 -27.07376 -26.23884 -23.09244 -21.91286 -21.70507 -20.51061 -17.28228 -17.12011 -15.43057 -15.26098 -14.96257 -14.22082 -13.93267 -13.88272 -13.52940 -13.23682 -12.85923 -12.48249 -12.24531 -12.05208 -12.02065 -11.77864 -11.32938 -11.22404 -11.17940 -11.10471 -10.85414 -10.60590 -10.53391 -10.15625 -9.84813 -9.38823 -8.57786 -8.31390 -8.19914 -7.81504 -6.24392 -4.25716 1.81731 2.01233 3.21995 3.29545 3.33143 3.45975 3.62009 4.27815 4.29812 4.42260 5.05100 5.09398 5.30558 5.41004 5.51408 5.57605 5.70927 5.87411 5.91556 5.97476 6.11227 6.26186 6.26632 6.30234 6.33044 6.50261 6.69530 6.93441 7.10765 7.15570 7.24181 7.34317 7.38974 7.47063 7.62967 7.76097 8.09138 8.39396 8.76022 9.36136 10.85200 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.010667 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.824752 B = 2624.246681 C = 3372.307844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.535 5.535 3 C 0.014 3.986 4 C 0.243 3.757 5 C 0.262 3.738 6 N -0.460 5.460 7 C 0.002 3.998 8 C -0.527 4.527 9 H 0.065 0.935 10 C 0.068 3.932 11 N -0.882 5.882 12 Si 0.888 3.112 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.269 1.269 16 C -0.071 4.071 17 C -0.097 4.097 18 C -0.144 4.144 19 C -0.122 4.122 20 C -0.138 4.138 21 C -0.098 4.098 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.453 -4.454 -7.840 10.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.259 5.259 3 C -0.135 4.135 4 C 0.151 3.849 5 C -0.056 4.056 6 N -0.137 5.137 7 C -0.037 4.037 8 C -0.565 4.565 9 H 0.083 0.917 10 C -0.136 4.136 11 N -0.520 5.520 12 Si 0.715 3.285 13 H -0.205 1.205 14 H -0.209 1.209 15 H -0.194 1.194 16 C -0.073 4.073 17 C -0.115 4.115 18 C -0.162 4.162 19 C -0.141 4.141 20 C -0.156 4.156 21 C -0.115 4.115 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.639 -4.616 -8.268 10.145 hybrid contribution -0.201 -0.006 1.581 1.594 sum -3.840 -4.623 -6.687 8.990 Atomic orbital electron populations 1.22414 0.86496 1.02669 1.00932 1.62265 1.08696 1.13796 1.41128 1.22502 1.00397 0.89019 1.01541 1.17582 0.81318 0.92597 0.93375 1.28420 0.94191 0.92137 0.90830 1.80990 1.12842 1.09245 1.10575 1.19846 0.98217 0.96834 0.88797 1.21065 1.33922 1.09687 0.91830 0.91711 1.24960 0.94846 0.94739 0.99049 1.69935 1.40107 1.19475 1.22435 0.86631 0.79668 0.80417 0.81790 1.20467 1.20931 1.19352 1.19351 1.00248 0.93910 0.93761 1.21075 0.98451 0.93995 0.97982 1.20953 1.01729 0.95726 0.97817 1.21116 1.00316 0.99296 0.93338 1.21230 1.01219 0.95641 0.97502 1.22801 0.92508 0.94811 1.01383 0.94044 0.91726 0.90956 0.92042 0.91480 0.93279 0.94207 0.94190 0.92534 0.85997 0.86940 0.87131 0.86576 0.80067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.85 60.07 0.53 0.87 16 2 N -0.54 -9.09 4.29 -240.07 -1.03 -10.12 16 3 C 0.01 0.22 8.97 60.06 0.54 0.76 16 4 C 0.24 4.82 0.25 -135.54 -0.03 4.79 16 5 C 0.26 5.77 11.45 -20.76 -0.24 5.53 16 6 N -0.46 -10.70 18.54 42.15 0.78 -9.91 16 7 C 0.00 0.05 2.89 -27.88 -0.08 -0.03 16 8 C -0.53 -13.25 5.37 -34.44 -0.19 -13.44 16 9 H 0.06 1.66 6.32 -52.48 -0.33 1.33 16 10 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 11 N -0.88 -24.00 13.28 55.43 0.74 -23.26 16 12 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 C -0.07 -1.33 3.44 -104.62 -0.36 -1.69 16 17 C -0.10 -1.60 8.26 -39.58 -0.33 -1.93 16 18 C -0.14 -2.12 10.05 -39.59 -0.40 -2.52 16 19 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 20 C -0.14 -2.26 10.05 -39.58 -0.40 -2.66 16 21 C -0.10 -1.87 8.00 -39.58 -0.32 -2.18 16 22 H 0.04 0.66 6.55 -51.93 -0.34 0.32 16 23 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 24 H 0.07 1.07 6.26 -51.92 -0.33 0.74 16 25 H 0.06 1.04 7.26 -51.93 -0.38 0.67 16 26 H 0.07 0.88 8.06 -51.93 -0.42 0.47 16 27 H 0.05 0.86 5.97 -51.93 -0.31 0.55 16 28 H 0.04 0.98 6.02 -51.93 -0.31 0.67 16 29 H 0.04 0.93 6.56 -51.93 -0.34 0.59 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.12 1.94 7.86 -52.49 -0.41 1.52 16 32 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 33 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.18 3.92 4.33 -52.49 -0.23 3.69 16 LS Contribution 285.78 15.07 4.31 4.31 Total: -1.00 -27.67 285.78 -6.20 -33.87 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.22 Total: 2.62 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.76 Total: -13.01 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.49 Total: -43.29 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.67 -6.20 -33.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075622983.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.212 kcal (2) G-P(sol) polarization free energy of solvation -27.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds