Wall clock time and date at job start Mon Mar 30 2020 07:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 110.99663 * 2 1 4 4 C 1.46902 * 110.99793 * 123.95266 * 2 1 3 5 5 C 1.47193 * 109.47095 * 175.46488 * 4 2 1 6 6 N 3.39312 * 157.12367 * 132.42917 * 2 1 3 7 7 C 1.53002 * 109.47266 * 295.46348 * 4 2 1 8 8 C 1.50699 * 109.47277 * 185.68950 * 7 4 2 9 9 H 1.08006 * 119.99673 * 353.63094 * 8 7 4 10 10 C 1.37871 * 120.00201 * 173.62579 * 8 7 4 11 11 N 1.31520 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00272 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47022 * 90.00018 * 12 10 8 14 14 H 1.48503 * 109.47458 * 210.00364 * 12 10 8 15 15 H 1.48509 * 109.47006 * 330.00540 * 12 10 8 16 16 C 1.50703 * 109.47237 * 55.46366 * 4 2 1 17 17 C 1.38241 * 119.99762 * 44.43860 * 16 4 2 18 18 C 1.38236 * 119.99746 * 180.02562 * 17 16 4 19 19 C 1.38226 * 120.00273 * 359.94777 * 18 17 16 20 20 C 1.38240 * 120.00122 * 0.28638 * 19 18 17 21 21 C 1.38231 * 120.00375 * 224.41335 * 16 4 2 22 22 H 1.09000 * 109.47556 * 296.04300 * 1 2 3 23 23 H 1.09000 * 109.47077 * 56.04831 * 1 2 3 24 24 H 1.09007 * 109.46976 * 176.04660 * 1 2 3 25 25 H 1.09001 * 109.46955 * 187.81209 * 3 2 1 26 26 H 1.09000 * 109.47596 * 307.81587 * 3 2 1 27 27 H 1.08999 * 109.47004 * 67.81677 * 3 2 1 28 28 H 1.08993 * 109.47074 * 305.69289 * 7 4 2 29 29 H 1.09004 * 109.46833 * 65.69405 * 7 4 2 30 30 H 0.97001 * 119.99890 * 179.97438 * 11 10 8 31 31 H 1.07999 * 119.99838 * 359.97410 * 17 16 4 32 32 H 1.08003 * 119.99229 * 179.97438 * 18 17 16 33 33 H 1.07998 * 120.00633 * 180.02562 * 19 18 17 34 34 H 1.07993 * 120.00650 * 179.72642 * 20 19 18 35 35 H 1.08000 * 119.99537 * 0.02562 * 21 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4628 -0.8360 1.0451 6 7 4.5953 -0.8899 0.9736 7 6 1.5992 -0.0757 2.4443 8 6 2.2546 -0.7808 3.6038 9 1 2.8056 -1.6949 3.4382 10 6 2.1510 -0.2590 4.8757 11 7 1.4797 0.8538 5.0773 12 14 2.9641 -1.1326 6.3128 13 1 4.3478 -0.6215 6.4841 14 1 2.1854 -0.8783 7.5515 15 1 3.0054 -2.5928 6.0451 16 6 1.4234 -2.1600 1.1124 17 6 1.3661 -2.8622 -0.0770 18 6 0.8410 -4.1407 -0.1003 19 6 0.3741 -4.7174 1.0659 20 6 0.4269 -4.0135 2.2545 21 6 0.9565 -2.7368 2.2786 22 1 -0.3634 0.4512 0.9233 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3633 -1.0253 -0.0709 25 1 3.0761 1.3458 -0.1397 26 1 1.5374 1.9365 -0.8118 27 1 1.7633 1.8496 0.9516 28 1 1.9258 0.9638 2.4196 29 1 0.5161 -0.1137 2.5613 30 1 1.4065 1.2208 5.9722 31 1 1.7309 -2.4115 -0.9882 32 1 0.7959 -4.6890 -1.0297 33 1 -0.0358 -5.7164 1.0479 34 1 0.0582 -4.4623 3.1649 35 1 1.0013 -2.1882 3.2078 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075622983.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:33 Heat of formation + Delta-G solvation = 54.341608 kcal Electronic energy + Delta-G solvation = -17874.988053 eV Core-core repulsion = 15258.976092 eV Total energy + Delta-G solvation = -2616.011961 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 6.10 seconds Orbital eigenvalues (eV) -41.23857 -38.61859 -36.78329 -35.30263 -33.07845 -31.71345 -30.22384 -28.42517 -27.83197 -24.87149 -23.27825 -23.01040 -21.98575 -19.07506 -18.56441 -17.03501 -16.84314 -16.46733 -15.75107 -15.33206 -15.23536 -15.01432 -14.81801 -14.34176 -14.18731 -13.82460 -13.67937 -13.36421 -13.13060 -13.04840 -12.94251 -12.72691 -12.53046 -12.43647 -12.22201 -12.16464 -11.62216 -11.47485 -11.26108 -10.57481 -9.58753 -9.52379 -9.27028 -8.25231 -6.29382 0.52932 0.72931 1.35091 1.38856 1.47262 1.77351 1.86507 2.35912 2.81646 3.01849 3.08357 3.53916 3.89655 4.20462 4.26051 4.35513 4.43040 4.56376 4.61119 4.72772 4.83821 4.87687 4.96155 4.97303 5.12739 5.21964 5.32002 5.36375 5.48778 5.64969 5.72932 5.80230 5.88783 5.97381 6.07908 6.21249 6.35072 6.63878 6.77303 7.33265 8.84724 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.010667 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.824752 B = 2624.246681 C = 3372.307844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.528 5.528 3 C 0.015 3.985 4 C 0.249 3.751 5 C 0.268 3.732 6 N -0.488 5.488 7 C 0.016 3.984 8 C -0.522 4.522 9 H 0.056 0.944 10 C 0.021 3.979 11 N -0.915 5.915 12 Si 0.939 3.061 13 H -0.286 1.286 14 H -0.276 1.276 15 H -0.262 1.262 16 C -0.088 4.088 17 C -0.100 4.100 18 C -0.134 4.134 19 C -0.113 4.113 20 C -0.142 4.142 21 C -0.124 4.124 22 H 0.023 0.977 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.103 0.897 27 H 0.028 0.972 28 H 0.015 0.985 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.131 0.869 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.334 -6.376 -9.447 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.252 5.252 3 C -0.133 4.133 4 C 0.156 3.844 5 C -0.050 4.050 6 N -0.165 5.165 7 C -0.024 4.024 8 C -0.560 4.560 9 H 0.074 0.926 10 C -0.179 4.179 11 N -0.554 5.554 12 Si 0.764 3.236 13 H -0.212 1.212 14 H -0.201 1.201 15 H -0.186 1.186 16 C -0.089 4.089 17 C -0.118 4.118 18 C -0.152 4.152 19 C -0.131 4.131 20 C -0.160 4.160 21 C -0.142 4.142 22 H 0.042 0.958 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.122 0.878 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.149 0.851 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.526 -6.546 -9.881 12.687 hybrid contribution 0.026 0.544 2.013 2.085 sum -4.500 -6.002 -7.868 10.871 Atomic orbital electron populations 1.22489 0.84904 1.03357 1.01458 1.62345 1.09960 1.13824 1.39050 1.22539 1.00030 0.88908 1.01857 1.17475 0.80233 0.93954 0.92718 1.28958 0.94788 0.91225 0.90018 1.80966 1.13670 1.10367 1.11494 1.19607 0.97200 0.95443 0.90105 1.21238 1.32953 1.09105 0.92688 0.92607 1.25600 0.95642 0.95430 1.01244 1.70020 1.41763 1.20786 1.22827 0.85832 0.78338 0.79782 0.79620 1.21211 1.20118 1.18615 1.19272 1.01536 0.93384 0.94737 1.21182 0.98663 0.94865 0.97137 1.21368 0.99657 0.94802 0.99366 1.21504 0.98882 1.00500 0.92239 1.21424 1.00719 0.94621 0.99261 1.22486 0.95176 0.96283 1.00289 0.95787 0.88419 0.90624 0.93256 0.87817 0.95337 0.96725 0.95140 0.92559 0.85317 0.83380 0.83461 0.85141 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 8.85 127.69 1.13 1.85 16 2 N -0.53 -17.53 4.29 -913.43 -3.92 -21.45 16 3 C 0.01 0.47 8.97 127.69 1.15 1.61 16 4 C 0.25 9.94 0.25 0.97 0.00 9.94 16 5 C 0.27 11.92 11.45 89.44 1.02 12.94 16 6 N -0.49 -22.95 18.54 20.00 0.37 -22.58 16 7 C 0.02 0.74 2.89 29.85 0.09 0.83 16 8 C -0.52 -27.10 5.37 25.60 0.14 -26.97 16 9 H 0.06 2.96 6.32 -2.91 -0.02 2.94 16 10 C 0.02 1.13 5.46 84.65 0.46 1.59 16 11 N -0.91 -51.34 13.28 21.45 0.28 -51.06 16 12 Si 0.94 42.86 29.54 68.60 2.03 44.89 16 13 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 16 C -0.09 -3.23 3.44 -19.86 -0.07 -3.30 16 17 C -0.10 -3.07 8.26 22.27 0.18 -2.89 16 18 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 19 C -0.11 -2.86 10.05 22.27 0.22 -2.63 16 20 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 21 C -0.12 -4.75 8.00 22.27 0.18 -4.57 16 22 H 0.02 0.76 6.55 -2.39 -0.02 0.74 16 23 H 0.10 2.13 8.08 -2.39 -0.02 2.11 16 24 H 0.08 2.10 6.26 -2.38 -0.01 2.09 16 25 H 0.05 1.68 7.26 -2.39 -0.02 1.66 16 26 H 0.10 2.51 8.06 -2.39 -0.02 2.49 16 27 H 0.03 1.02 5.97 -2.39 -0.01 1.01 16 28 H 0.01 0.75 6.02 -2.39 -0.01 0.74 16 29 H 0.03 1.49 6.56 -2.38 -0.02 1.47 16 30 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.13 3.74 7.86 -2.91 -0.02 3.72 16 32 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.15 6.66 4.33 -2.91 -0.01 6.64 16 Total: -1.00 -60.92 285.78 4.81 -56.11 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.10 Total: 13.00 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 4.95 Total: -18.91 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -3.26 Total: -95.08 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -60.92 4.81 -56.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075622983.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.447 kcal (2) G-P(sol) polarization free energy of solvation -60.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.11 seconds