Wall clock time and date at job start Mon Mar 30 2020 07:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99856 * 2 1 4 4 H 1.48498 * 109.47106 * 270.00197 * 3 2 1 5 5 H 1.48500 * 109.47117 * 30.00240 * 3 2 1 6 6 H 1.48503 * 109.46846 * 150.00085 * 3 2 1 7 7 C 1.37876 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99782 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00352 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46483 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.46689 * 180.02562 * 11 10 9 13 13 C 1.38263 * 120.11053 * 269.72339 * 12 11 10 14 14 C 1.37935 * 119.76651 * 180.41560 * 13 12 11 15 15 C 1.38900 * 120.54344 * 0.02562 * 14 13 12 16 16 C 1.37658 * 119.69138 * 359.70441 * 15 14 13 17 17 C 1.37935 * 120.11215 * 90.00262 * 12 11 10 18 18 C 1.50634 * 122.56331 * 180.79939 * 16 15 14 19 19 C 1.52729 * 110.59432 * 341.99912 * 18 16 15 20 20 C 1.53324 * 108.41009 * 51.10413 * 19 18 16 21 21 C 1.50639 * 117.75329 * 179.38690 * 15 14 13 22 22 H 0.97004 * 119.99936 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46807 * 59.99777 * 9 7 2 24 24 H 1.09002 * 109.47096 * 299.99947 * 9 7 2 25 25 H 1.09001 * 109.47045 * 60.00950 * 10 9 7 26 26 H 1.08990 * 109.47355 * 300.00330 * 10 9 7 27 27 H 1.08997 * 109.47375 * 60.00577 * 11 10 9 28 28 H 1.09002 * 109.47313 * 299.99990 * 11 10 9 29 29 H 1.07996 * 120.11747 * 0.39549 * 13 12 11 30 30 H 1.08007 * 119.72876 * 179.97438 * 14 13 12 31 31 H 1.07999 * 119.72461 * 359.73672 * 17 12 11 32 32 H 1.08997 * 109.25147 * 102.28705 * 18 16 15 33 33 H 1.09001 * 109.25257 * 221.71412 * 18 16 15 34 34 H 1.08994 * 109.67716 * 291.37373 * 19 18 16 35 35 H 1.09000 * 109.70613 * 170.84423 * 19 18 16 36 36 H 1.09000 * 109.67889 * 170.47084 * 20 19 18 37 37 H 1.08994 * 109.68330 * 49.91891 * 20 19 18 38 38 H 1.08992 * 109.25427 * 282.51168 * 21 15 14 39 39 H 1.09001 * 109.25420 * 41.94672 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6364 -0.0022 12 6 6.0539 -4.0573 -0.0027 13 6 6.2915 -4.7094 1.1931 14 6 6.7594 -6.0069 1.1843 15 6 6.9946 -6.6644 -0.0165 16 6 6.7527 -6.0171 -1.2070 17 6 6.2836 -4.7096 -1.1962 18 6 6.9683 -6.6739 -2.5454 19 6 7.8696 -7.8987 -2.4037 20 6 7.3075 -8.7870 -1.2876 21 6 7.5187 -8.0752 0.0472 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6803 0.8889 24 1 3.8745 -0.6800 -0.8912 25 1 3.6579 -3.1505 -0.8908 26 1 3.6585 -3.1501 0.8891 27 1 5.9156 -2.1223 0.8873 28 1 5.9142 -2.1229 -0.8927 29 1 6.1117 -4.2045 2.1307 30 1 6.9452 -6.5156 2.1188 31 1 6.0980 -4.1993 -2.1297 32 1 6.0057 -6.9813 -2.9540 33 1 7.4352 -5.9608 -3.2247 34 1 8.8806 -7.5827 -2.1472 35 1 7.8853 -8.4539 -3.3416 36 1 7.8311 -9.7431 -1.2806 37 1 6.2427 -8.9523 -1.4510 38 1 8.5836 -8.0530 0.2782 39 1 6.9925 -8.6190 0.8318 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082533872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:55 Heat of formation + Delta-G solvation = -36.821648 kcal Electronic energy + Delta-G solvation = -16732.609932 eV Core-core repulsion = 14216.185179 eV Total energy + Delta-G solvation = -2516.424753 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97104 -37.74709 -35.97103 -34.33108 -33.32196 -31.64315 -30.01877 -28.42863 -25.33669 -24.18631 -23.15704 -22.64753 -21.77633 -19.91022 -18.87549 -17.09739 -16.64775 -16.39810 -16.01129 -15.51496 -15.31492 -14.89210 -14.70519 -14.55472 -14.28533 -13.88423 -13.59009 -13.46368 -13.17224 -12.94533 -12.76978 -12.56015 -12.26631 -12.10468 -11.77235 -11.72992 -11.52766 -11.45707 -11.32932 -11.24242 -11.04658 -10.77443 -9.57909 -9.23208 -8.30482 -6.35200 0.47936 0.51030 1.35467 1.37765 1.50322 2.35982 2.82703 3.04658 3.73088 3.79691 3.99653 4.06672 4.10515 4.16581 4.28540 4.40342 4.45128 4.53632 4.61288 4.68509 4.70378 4.75565 4.86947 4.99153 5.03357 5.06936 5.07166 5.10689 5.17590 5.18132 5.25718 5.38884 5.47512 5.52323 5.56535 5.62619 5.66687 5.79849 5.83843 6.19697 6.28232 6.72741 7.29478 8.86704 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.043157 B = 0.003954 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.635461 B = 7079.397966 C = 7201.090470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.537 4.537 8 H 0.026 0.974 9 C -0.012 4.012 10 C -0.085 4.085 11 C -0.075 4.075 12 C -0.089 4.089 13 C -0.134 4.134 14 C -0.125 4.125 15 C -0.096 4.096 16 C -0.085 4.085 17 C -0.135 4.135 18 C -0.082 4.082 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.077 4.077 22 H 0.267 0.733 23 H 0.022 0.978 24 H 0.021 0.979 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.139 0.861 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.503 -15.716 -2.077 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.575 4.575 8 H 0.044 0.956 9 C -0.049 4.049 10 C -0.123 4.123 11 C -0.112 4.112 12 C -0.089 4.089 13 C -0.152 4.152 14 C -0.142 4.142 15 C -0.096 4.096 16 C -0.085 4.085 17 C -0.153 4.153 18 C -0.119 4.119 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.114 4.114 22 H 0.075 0.925 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.143 0.857 30 H 0.156 0.844 31 H 0.139 0.861 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.360 -15.616 -2.075 25.742 hybrid contribution -0.673 1.016 0.107 1.223 sum 19.686 -14.600 -1.968 24.588 Atomic orbital electron populations 1.70082 1.08424 1.28240 1.52689 1.26098 0.95689 1.03785 0.93976 0.85579 0.79501 0.77757 0.79331 1.18990 1.20852 1.16778 1.21538 0.92398 0.92986 1.50536 0.95567 1.19562 0.93663 0.95005 0.96679 1.21266 0.93899 0.96978 1.00151 1.20623 0.94808 0.92698 1.03064 1.19987 0.98591 0.96486 0.93870 1.21172 1.00555 0.95759 0.97750 1.21387 0.99788 0.94577 0.98489 1.19923 1.00259 0.97313 0.92137 1.19870 0.99078 0.93664 0.95865 1.21237 1.01001 0.95311 0.97743 1.20525 1.00821 0.97836 0.92754 1.21538 0.98728 0.95397 0.99626 1.21567 1.01341 0.98863 0.93926 1.20501 1.01448 0.90423 0.99030 0.92454 0.95936 0.96088 0.94031 0.93931 0.90654 0.90750 0.85667 0.84350 0.86139 0.90794 0.90376 0.91547 0.89993 0.89614 0.92409 0.89761 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.52 13.96 21.45 0.30 -61.23 16 2 C 0.00 0.05 5.47 84.66 0.46 0.51 16 3 Si 0.96 45.18 27.47 68.60 1.88 47.06 16 4 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.24 -10.66 6.54 99.48 0.65 -10.01 16 7 C -0.54 -32.36 9.66 25.60 0.25 -32.11 16 8 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.09 -3.55 5.14 30.60 0.16 -3.39 16 11 C -0.07 -2.45 5.35 29.85 0.16 -2.29 16 12 C -0.09 -2.73 5.13 -19.93 -0.10 -2.83 16 13 C -0.13 -3.76 9.71 22.20 0.22 -3.54 16 14 C -0.12 -3.00 9.61 22.36 0.21 -2.79 16 15 C -0.10 -2.22 5.74 -19.86 -0.11 -2.33 16 16 C -0.08 -2.10 5.74 -19.86 -0.11 -2.21 16 17 C -0.13 -3.85 9.27 22.36 0.21 -3.64 16 18 C -0.08 -1.57 5.67 29.74 0.17 -1.40 16 19 C -0.12 -1.66 5.98 30.61 0.18 -1.48 16 20 C -0.12 -1.68 5.98 30.62 0.18 -1.50 16 21 C -0.08 -1.25 5.67 29.74 0.17 -1.08 16 22 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 23 H 0.02 1.06 7.20 -2.38 -0.02 1.04 16 24 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 28 H 0.07 2.29 8.09 -2.39 -0.02 2.27 16 29 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.14 2.61 8.05 -2.91 -0.02 2.58 16 31 H 0.12 3.26 8.05 -2.91 -0.02 3.24 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 34 H 0.07 0.94 8.10 -2.39 -0.02 0.92 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 Total: -1.00 -68.88 313.03 5.28 -63.61 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.93 Total: 11.10 kcal Atomic # 6 Polarization: -62.70 SS G_CDS: 2.16 Total: -60.54 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.30 Total: -61.23 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -68.88 5.28 -63.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082533872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.785 kcal (2) G-P(sol) polarization free energy of solvation -68.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds