Wall clock time and date at job start Mon Mar 30 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36049 * 126.34717 * 90.03036 * 3 2 1 5 5 C 1.50692 * 124.94788 * 359.97297 * 4 3 2 6 6 N 1.30109 * 110.09465 * 180.02562 * 4 3 2 7 7 C 1.35777 * 109.64909 * 359.97438 * 6 4 3 8 8 C 1.39747 * 133.60406 * 180.02562 * 7 6 4 9 9 C 1.36608 * 119.88295 * 179.23142 * 8 7 6 10 10 C 1.50695 * 119.66164 * 180.23133 * 9 8 7 11 11 C 1.50697 * 109.47120 * 270.39258 * 10 9 8 12 12 H 1.08004 * 120.00047 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00512 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00375 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99677 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47010 * 89.99795 * 15 13 11 17 17 H 1.48500 * 109.47358 * 210.00030 * 15 13 11 18 18 H 1.48507 * 109.47102 * 330.00327 * 15 13 11 19 19 C 1.38775 * 120.67151 * 0.62515 * 9 8 7 20 20 C 1.37852 * 120.44936 * 359.60431 * 19 9 8 21 21 C 1.38054 * 126.35228 * 269.71611 * 3 2 1 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 27 27 H 1.09005 * 109.47221 * 90.00482 * 5 4 3 28 28 H 1.09001 * 109.47180 * 210.00199 * 5 4 3 29 29 H 1.08995 * 109.47425 * 330.00577 * 5 4 3 30 30 H 1.08002 * 120.05266 * 359.95011 * 8 7 6 31 31 H 1.09004 * 109.47386 * 30.39331 * 10 9 8 32 32 H 1.08999 * 109.47536 * 150.39271 * 10 9 8 33 33 H 0.96998 * 119.99942 * 180.02562 * 14 13 11 34 34 H 1.08002 * 119.77531 * 179.58221 * 19 9 8 35 35 H 1.08002 * 120.15612 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2876 2.1413 1.0958 5 6 2.1267 1.6856 2.5231 6 7 2.7032 3.3192 0.7317 7 6 2.7295 3.3952 -0.6237 8 6 3.0848 4.4016 -1.5259 9 6 3.0177 4.1657 -2.8698 10 6 3.4071 5.2527 -3.8381 11 6 2.1972 6.0882 -4.1684 12 1 1.2418 5.8555 -3.7215 13 6 2.3096 7.1496 -5.0412 14 7 1.2538 7.8790 -5.3291 15 14 3.9620 7.5526 -5.8137 16 1 4.1059 6.8086 -7.0908 17 1 4.0419 9.0115 -6.0790 18 1 5.0519 7.1578 -4.8854 19 6 2.5869 2.9379 -3.3524 20 6 2.2269 1.9322 -2.4811 21 6 2.2962 2.1509 -1.1119 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.0567 1.2329 2.8671 28 1 1.8848 2.5418 3.1528 29 1 1.3223 0.9524 2.5820 30 1 3.4229 5.3603 -1.1611 31 1 4.1725 5.8842 -3.3869 32 1 3.7984 4.8034 -4.7508 33 1 1.3329 8.6255 -5.9434 34 1 2.5331 2.7694 -4.4178 35 1 1.8927 0.9783 -2.8619 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082601486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:23 Heat of formation + Delta-G solvation = 58.793645 kcal Electronic energy + Delta-G solvation = -16887.241787 eV Core-core repulsion = 14271.422881 eV Total energy + Delta-G solvation = -2615.818906 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 4.71 seconds Orbital eigenvalues (eV) -41.81699 -37.41989 -34.88772 -33.15784 -31.62162 -30.74933 -29.89394 -28.30149 -26.40039 -23.88328 -22.61265 -21.70465 -20.27115 -19.60801 -16.88368 -16.71062 -16.50833 -15.50548 -14.79926 -14.46918 -14.18534 -13.66357 -13.38477 -13.29684 -12.95755 -12.89511 -12.68393 -12.42563 -12.19231 -11.77357 -11.54504 -11.53128 -11.01690 -10.86525 -10.45399 -10.10260 -10.01910 -9.79410 -9.50777 -9.28744 -8.53352 -7.62983 -7.43891 -6.02269 -4.00934 1.45347 2.14546 2.77576 3.12370 3.32586 3.40522 3.44218 4.36230 4.46324 4.46870 4.48883 4.70347 4.80731 4.98766 5.18413 5.28835 5.31882 5.35151 5.41244 5.50216 5.60609 5.72555 5.87131 5.93911 6.06205 6.11503 6.39024 6.68045 6.89752 6.98383 7.04431 7.11896 7.43378 7.52230 7.63383 7.75373 8.27893 8.55497 9.03925 9.58165 11.10859 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.039350 B = 0.005196 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.389182 B = 5387.367419 C = 5608.321729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 N -0.494 5.494 4 C 0.262 3.738 5 C -0.072 4.072 6 N -0.494 5.494 7 C 0.048 3.952 8 C -0.070 4.070 9 C -0.041 4.041 10 C 0.018 3.982 11 C -0.512 4.512 12 H 0.074 0.926 13 C 0.069 3.931 14 N -0.901 5.901 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.087 4.087 20 C -0.123 4.123 21 C 0.033 3.967 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.264 0.736 34 H 0.128 0.872 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.390 -17.697 11.592 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.012 4.012 3 N -0.187 5.187 4 C -0.003 4.003 5 C -0.130 4.130 6 N -0.214 5.214 7 C -0.069 4.069 8 C -0.090 4.090 9 C -0.044 4.044 10 C -0.019 4.019 11 C -0.550 4.550 12 H 0.092 0.908 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.704 3.296 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.107 4.107 20 C -0.144 4.144 21 C -0.073 4.073 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.143 0.857 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.519 -16.996 12.010 20.866 hybrid contribution 0.361 -0.373 -1.070 1.189 sum 1.880 -17.369 10.940 20.613 Atomic orbital electron populations 1.22189 0.94584 1.02712 1.03440 1.21645 0.95317 0.80331 1.03938 1.45153 1.55773 1.12589 1.05189 1.23422 0.98823 0.87384 0.90683 1.20277 1.02782 1.02522 0.87455 1.70319 1.21910 1.17559 1.11644 1.19006 1.04533 0.93776 0.89587 1.19890 1.00826 0.97214 0.91069 1.19749 0.95962 0.94895 0.93775 1.18773 0.97821 0.92280 0.93016 1.20969 0.95192 1.12077 1.26727 0.90826 1.24996 0.96420 0.95743 0.96099 1.69902 1.29180 1.19245 1.35664 0.86812 0.85102 0.77587 0.80067 1.20205 1.21302 1.18832 1.20896 0.98211 0.92346 0.99212 1.19795 1.05989 0.99952 0.88712 1.18769 1.06486 0.92947 0.89140 0.90834 0.91964 0.91620 0.89388 0.89508 0.89982 0.88919 0.90753 0.85692 0.95307 0.95740 0.92663 0.85436 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.11 1.01 6.45 -4.04 -0.03 0.99 16 3 N -0.49 -7.05 2.81 -111.16 -0.31 -7.36 16 4 C 0.26 3.88 7.85 -154.82 -1.22 2.67 16 5 C -0.07 -0.66 9.95 36.00 0.36 -0.30 16 6 N -0.49 -9.42 11.27 -8.23 -0.09 -9.52 16 7 C 0.05 0.98 7.23 -84.70 -0.61 0.37 16 8 C -0.07 -1.53 9.67 -39.61 -0.38 -1.91 16 9 C -0.04 -0.91 5.03 -105.01 -0.53 -1.44 16 10 C 0.02 0.45 4.15 -29.04 -0.12 0.32 16 11 C -0.51 -14.77 9.65 -34.44 -0.33 -15.10 16 12 H 0.07 2.34 7.98 -52.48 -0.42 1.92 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 15 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 19 C -0.09 -1.68 9.67 -39.52 -0.38 -2.06 16 20 C -0.12 -2.10 10.05 -39.50 -0.40 -2.50 16 21 C 0.03 0.59 6.87 -83.99 -0.58 0.02 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 0.57 7.62 -51.93 -0.40 0.18 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.49 7.65 -51.93 -0.40 0.09 16 30 H 0.13 2.71 8.06 -52.49 -0.42 2.28 16 31 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 32 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 297.77 15.07 4.49 4.49 Total: -1.00 -34.27 297.77 -8.69 -42.96 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -4.94 Total: -2.22 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -3.93 Total: -18.08 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.37 Total: -44.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.27 -8.69 -42.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082601486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.755 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.71 seconds