Wall clock time and date at job start Mon Mar 30 2020 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36049 * 126.34717 * 90.03036 * 3 2 1 5 5 C 1.50692 * 124.94788 * 359.97297 * 4 3 2 6 6 N 1.30109 * 110.09465 * 180.02562 * 4 3 2 7 7 C 1.35777 * 109.64909 * 359.97438 * 6 4 3 8 8 C 1.39747 * 133.60406 * 180.02562 * 7 6 4 9 9 C 1.36608 * 119.88295 * 179.23142 * 8 7 6 10 10 C 1.50695 * 119.66164 * 180.23133 * 9 8 7 11 11 C 1.50697 * 109.47120 * 270.39258 * 10 9 8 12 12 H 1.08004 * 120.00047 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00512 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00375 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99677 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47010 * 89.99795 * 15 13 11 17 17 H 1.48500 * 109.47358 * 210.00030 * 15 13 11 18 18 H 1.48507 * 109.47102 * 330.00327 * 15 13 11 19 19 C 1.38775 * 120.67151 * 0.62515 * 9 8 7 20 20 C 1.37852 * 120.44936 * 359.60431 * 19 9 8 21 21 C 1.38054 * 126.35228 * 269.71611 * 3 2 1 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 27 27 H 1.09005 * 109.47221 * 90.00482 * 5 4 3 28 28 H 1.09001 * 109.47180 * 210.00199 * 5 4 3 29 29 H 1.08995 * 109.47425 * 330.00577 * 5 4 3 30 30 H 1.08002 * 120.05266 * 359.95011 * 8 7 6 31 31 H 1.09004 * 109.47386 * 30.39331 * 10 9 8 32 32 H 1.08999 * 109.47536 * 150.39271 * 10 9 8 33 33 H 0.96998 * 119.99942 * 180.02562 * 14 13 11 34 34 H 1.08002 * 119.77531 * 179.58221 * 19 9 8 35 35 H 1.08002 * 120.15612 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2876 2.1413 1.0958 5 6 2.1267 1.6856 2.5231 6 7 2.7032 3.3192 0.7317 7 6 2.7295 3.3952 -0.6237 8 6 3.0848 4.4016 -1.5259 9 6 3.0177 4.1657 -2.8698 10 6 3.4071 5.2527 -3.8381 11 6 2.1972 6.0882 -4.1684 12 1 1.2418 5.8555 -3.7215 13 6 2.3096 7.1496 -5.0412 14 7 1.2538 7.8790 -5.3291 15 14 3.9620 7.5526 -5.8137 16 1 4.1059 6.8086 -7.0908 17 1 4.0419 9.0115 -6.0790 18 1 5.0519 7.1578 -4.8854 19 6 2.5869 2.9379 -3.3524 20 6 2.2269 1.9322 -2.4811 21 6 2.2962 2.1509 -1.1119 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.0567 1.2329 2.8671 28 1 1.8848 2.5418 3.1528 29 1 1.3223 0.9524 2.5820 30 1 3.4229 5.3603 -1.1611 31 1 4.1725 5.8842 -3.3869 32 1 3.7984 4.8034 -4.7508 33 1 1.3329 8.6255 -5.9434 34 1 2.5331 2.7694 -4.4178 35 1 1.8927 0.9783 -2.8619 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082601486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:17 Heat of formation + Delta-G solvation = 37.735268 kcal Electronic energy + Delta-G solvation = -16888.154947 eV Core-core repulsion = 14271.422881 eV Total energy + Delta-G solvation = -2616.732066 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.09032 -38.89266 -35.92965 -35.16360 -33.24113 -31.86126 -31.17723 -29.76164 -27.91970 -25.02087 -24.20330 -23.08456 -21.83925 -20.74384 -18.95968 -18.09028 -17.80250 -16.66178 -16.46507 -15.95850 -15.37783 -15.14154 -14.68537 -14.51787 -14.17894 -14.01598 -13.91176 -13.51890 -13.44289 -13.29653 -13.02234 -12.57660 -12.35520 -12.30488 -12.14689 -11.79737 -11.74737 -11.52500 -11.18805 -10.86077 -10.77280 -9.05221 -8.91604 -8.28650 -6.33891 0.07354 0.63683 1.37472 1.40472 1.52717 1.70842 1.84932 2.37206 2.95726 3.05414 3.27479 3.57492 3.77313 4.09586 4.13150 4.18676 4.37138 4.39258 4.45472 4.56640 4.63639 4.71024 4.78976 4.85971 4.92497 5.02631 5.07786 5.16475 5.23467 5.29983 5.50352 5.54635 5.63487 5.94989 6.01535 6.28924 6.34277 6.71762 6.98580 7.29353 8.88262 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.039350 B = 0.005196 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.389182 B = 5387.367419 C = 5608.321729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 N -0.487 5.487 4 C 0.278 3.722 5 C -0.071 4.071 6 N -0.547 5.547 7 C 0.022 3.978 8 C -0.098 4.098 9 C -0.064 4.064 10 C 0.026 3.974 11 C -0.520 4.520 12 H 0.024 0.976 13 C 0.007 3.993 14 N -0.951 5.951 15 Si 0.953 3.047 16 H -0.259 1.259 17 H -0.283 1.283 18 H -0.248 1.248 19 C -0.107 4.107 20 C -0.102 4.102 21 C 0.026 3.974 22 H 0.105 0.895 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.126 0.874 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.026 0.974 32 H 0.040 0.960 33 H 0.268 0.732 34 H 0.141 0.859 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 -21.113 12.533 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.021 4.021 3 N -0.179 5.179 4 C 0.012 3.988 5 C -0.129 4.129 6 N -0.269 5.269 7 C -0.095 4.095 8 C -0.118 4.118 9 C -0.066 4.066 10 C -0.012 4.012 11 C -0.558 4.558 12 H 0.042 0.958 13 C -0.189 4.189 14 N -0.591 5.591 15 Si 0.775 3.225 16 H -0.183 1.183 17 H -0.209 1.209 18 H -0.172 1.172 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.083 4.083 22 H 0.124 0.876 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.144 0.856 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.315 -20.468 12.968 24.341 hybrid contribution -0.031 0.555 -1.158 1.284 sum 2.284 -19.914 11.811 23.265 Atomic orbital electron populations 1.22178 0.93871 1.04385 1.02095 1.22165 0.95828 0.77516 1.06542 1.45536 1.54568 1.14127 1.03641 1.24540 0.95201 0.86100 0.92937 1.20588 1.05362 1.03517 0.83450 1.70302 1.25075 1.20495 1.11000 1.19168 1.05111 0.94659 0.90610 1.19814 1.02912 0.97330 0.91780 1.19630 0.97970 0.95647 0.93351 1.18619 0.95686 0.92559 0.94287 1.21166 0.95016 1.13217 1.26423 0.95785 1.26000 1.01007 0.95310 0.96609 1.70063 1.32049 1.20161 1.36861 0.85618 0.79630 0.77539 0.79663 1.18323 1.20895 1.17187 1.21024 0.99242 0.91997 1.00348 1.20110 1.03367 1.00691 0.88101 1.18948 1.06110 0.92761 0.90439 0.87624 0.92090 0.94220 0.85587 0.88236 0.87439 0.88825 0.87302 0.87710 0.95589 0.94175 0.92340 0.84150 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 71.98 0.74 -1.39 16 2 C 0.10 1.36 6.45 86.38 0.56 1.92 16 3 N -0.49 -12.56 2.81 -505.59 -1.42 -13.98 16 4 C 0.28 7.64 7.85 137.92 1.08 8.73 16 5 C -0.07 -1.02 9.95 71.23 0.71 -0.31 16 6 N -0.55 -21.06 11.27 -179.96 -2.03 -23.09 16 7 C 0.02 0.91 7.23 39.45 0.29 1.20 16 8 C -0.10 -4.57 9.67 22.25 0.22 -4.36 16 9 C -0.06 -2.93 5.03 -20.12 -0.10 -3.03 16 10 C 0.03 1.29 4.15 29.10 0.12 1.41 16 11 C -0.52 -31.56 9.65 25.60 0.25 -31.31 16 12 H 0.02 1.63 7.98 -2.91 -0.02 1.61 16 13 C 0.01 0.45 5.47 84.66 0.46 0.91 16 14 N -0.95 -61.30 13.96 21.45 0.30 -61.01 16 15 Si 0.95 45.09 27.47 68.60 1.88 46.97 16 16 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 18 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 19 C -0.11 -4.12 9.67 22.31 0.22 -3.91 16 20 C -0.10 -3.33 10.05 22.32 0.22 -3.11 16 21 C 0.03 0.90 6.87 38.86 0.27 1.16 16 22 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.13 0.85 7.62 -2.39 -0.02 0.83 16 26 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.11 0.84 7.65 -2.39 -0.02 0.82 16 30 H 0.10 5.03 8.06 -2.91 -0.02 5.00 16 31 H 0.03 1.30 7.13 -2.38 -0.02 1.28 16 32 H 0.04 1.87 7.51 -2.39 -0.02 1.85 16 33 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 34 H 0.14 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -80.63 297.77 4.77 -75.86 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.01 Total: 7.31 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 5.02 Total: -32.07 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -3.15 Total: -98.07 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -80.63 4.77 -75.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082601486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.593 kcal (2) G-P(sol) polarization free energy of solvation -80.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds