Wall clock time and date at job start Mon Mar 30 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30058 * 124.91064 * 2 1 4 4 C 1.35940 * 109.53805 * 180.26324 * 3 2 1 5 5 C 1.39151 * 133.44415 * 179.73778 * 4 3 2 6 6 C 1.40317 * 119.41770 * 180.02562 * 5 4 3 7 7 C 1.41318 * 120.01229 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00454 * 154.92297 * 7 6 5 9 9 C 1.39877 * 119.99900 * 334.91631 * 7 6 5 10 10 N 1.30878 * 120.00113 * 344.00378 * 9 7 6 11 11 Si 1.86809 * 119.99813 * 163.99737 * 9 7 6 12 12 H 1.48499 * 109.46911 * 60.00445 * 11 9 7 13 13 H 1.48502 * 109.46540 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47326 * 300.00220 * 11 9 7 15 15 C 1.41126 * 119.97757 * 0.02562 * 6 5 4 16 16 C 1.36102 * 120.36667 * 0.02562 * 15 6 5 17 17 C 1.39415 * 120.28570 * 359.96286 * 16 15 6 18 18 N 1.36121 * 124.91514 * 179.81967 * 2 1 3 19 19 C 1.46500 * 126.28397 * 0.02562 * 18 2 1 20 20 C 1.53004 * 109.46721 * 239.13645 * 19 18 2 21 21 C 1.53000 * 109.46786 * 119.14460 * 19 18 2 22 22 H 1.08998 * 109.47433 * 270.95835 * 1 2 3 23 23 H 1.08998 * 109.47080 * 30.96625 * 1 2 3 24 24 H 1.09010 * 109.46828 * 150.95813 * 1 2 3 25 25 H 1.07994 * 120.29252 * 359.97438 * 5 4 3 26 26 H 0.96997 * 120.00063 * 180.02562 * 10 9 7 27 27 H 1.08000 * 119.81725 * 180.02562 * 15 6 5 28 28 H 1.08001 * 119.86186 * 180.02562 * 16 15 6 29 29 H 1.08997 * 109.47329 * 359.13805 * 19 18 2 30 30 H 1.08994 * 109.47069 * 293.46683 * 20 19 18 31 31 H 1.09004 * 109.46848 * 173.46537 * 20 19 18 32 32 H 1.09001 * 109.46612 * 53.47026 * 20 19 18 33 33 H 1.09000 * 109.46538 * 179.97438 * 21 19 18 34 34 H 1.09006 * 109.47023 * 299.99356 * 21 19 18 35 35 H 1.08997 * 109.47722 * 59.99585 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2514 1.0665 0.0000 4 6 3.5621 0.7062 -0.0059 5 6 4.7525 1.4267 -0.0131 6 6 5.9750 0.7379 -0.0185 7 6 7.1915 1.4570 -0.0253 8 1 8.0895 1.0030 0.3671 9 6 7.2327 2.7568 -0.5404 10 7 6.2534 3.1950 -1.2900 11 14 8.6853 3.8674 -0.1581 12 1 9.9334 3.2415 -0.6637 13 1 8.4889 5.1836 -0.8171 14 1 8.7881 4.0601 1.3107 15 6 5.9893 -0.6733 -0.0172 16 6 4.8220 -1.3732 -0.0111 17 6 3.5999 -0.7022 -0.0055 18 7 2.2861 -1.1162 0.0035 19 6 1.8140 -2.5030 0.0073 20 6 2.3498 -3.2206 1.2479 21 6 2.3152 -3.2158 -1.2503 22 1 -0.3634 0.0172 1.0275 23 1 -0.3633 0.8812 -0.5288 24 1 -0.3633 -0.8985 -0.4989 25 1 4.7357 2.5065 -0.0154 26 1 6.2822 4.0962 -1.6475 27 1 6.9317 -1.2008 -0.0209 28 1 4.8424 -2.4530 -0.0097 29 1 0.7242 -2.5158 0.0224 30 1 3.4336 -3.3102 1.1761 31 1 1.9065 -4.2144 1.3126 32 1 2.0906 -2.6485 2.1388 33 1 1.9642 -4.2477 -1.2472 34 1 1.9335 -2.7045 -2.1342 35 1 3.4050 -3.2030 -1.2654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082601487.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:55 Heat of formation + Delta-G solvation = 54.570878 kcal Electronic energy + Delta-G solvation = -17419.734847 eV Core-core repulsion = 14803.732828 eV Total energy + Delta-G solvation = -2616.002019 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00787 -36.45124 -35.37186 -33.27295 -30.61559 -30.39713 -28.68995 -27.18760 -27.10606 -24.69158 -22.00032 -20.79907 -20.25044 -18.96122 -17.31256 -15.99951 -15.67058 -14.87031 -14.77137 -14.30908 -13.66495 -13.31295 -13.10144 -12.62922 -12.55789 -12.43798 -12.30519 -12.08600 -11.92156 -11.65588 -11.33063 -11.18473 -11.02286 -10.80907 -10.61789 -10.09641 -9.86517 -9.81705 -9.21742 -8.95325 -8.66354 -7.05519 -6.76629 -6.56551 -4.18029 2.33576 2.90455 3.15988 3.18145 3.29403 3.44830 3.91177 4.05164 4.76164 4.77176 4.97166 5.09788 5.11996 5.35166 5.56840 5.64170 5.71698 5.77702 5.80025 5.82688 5.89717 6.02340 6.07107 6.25393 6.36541 6.61590 6.92517 6.98212 7.06146 7.29765 7.52604 7.74578 7.96425 8.13655 8.19016 8.36639 8.59802 8.98613 9.03136 9.16857 10.37107 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.035744 B = 0.006482 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.163779 B = 4318.408391 C = 4846.446324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.242 3.758 3 N -0.506 5.506 4 C 0.071 3.929 5 C -0.137 4.137 6 C 0.093 3.907 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.074 3.926 10 N -0.796 5.796 11 Si 0.906 3.094 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.161 4.161 16 C -0.108 4.108 17 C -0.032 4.032 18 N -0.490 5.490 19 C 0.141 3.859 20 C -0.162 4.162 21 C -0.164 4.164 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.127 0.873 26 H 0.279 0.721 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 -9.363 1.690 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.023 4.023 3 N -0.229 5.229 4 C -0.044 4.044 5 C -0.160 4.160 6 C 0.089 3.911 7 C -0.496 4.496 8 H 0.094 0.906 9 C -0.143 4.143 10 N -0.422 5.422 11 Si 0.731 3.269 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.181 4.181 16 C -0.129 4.129 17 C -0.136 4.136 18 N -0.186 5.186 19 C 0.037 3.963 20 C -0.220 4.220 21 C -0.222 4.222 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.085 0.915 25 H 0.145 0.855 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.267 -8.441 1.549 11.916 hybrid contribution 0.937 -0.361 0.014 1.005 sum -7.329 -8.802 1.563 11.560 Atomic orbital electron populations 1.20159 0.86316 1.03189 1.02844 1.23176 0.94741 0.81778 1.02572 1.70324 1.02357 1.26979 1.23194 1.19034 0.90986 0.90246 1.04106 1.20458 0.87576 0.99638 1.08312 1.17310 0.92986 0.90228 0.90557 1.19354 0.95468 0.98138 1.36609 0.90613 1.25834 0.97152 0.98426 0.92842 1.69842 1.31378 1.17761 1.23220 0.86412 0.81679 0.79059 0.79746 1.19230 1.20479 1.18992 1.20773 0.95343 0.94771 1.07252 1.19204 0.89816 0.96667 1.07184 1.18513 0.84027 0.95046 1.15968 1.44878 1.05181 1.05008 1.63506 1.21067 0.98928 0.80252 0.96071 1.22168 1.02723 0.99821 0.97293 1.22188 1.03112 0.99789 0.97115 0.90709 0.89580 0.91488 0.85546 0.91001 0.87993 0.89203 0.89307 0.91434 0.91583 0.92131 0.91547 0.92216 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.02 36.01 0.36 -0.53 16 2 C 0.24 4.80 7.85 -154.79 -1.22 3.58 16 3 N -0.51 -12.46 11.29 -8.24 -0.09 -12.55 16 4 C 0.07 1.89 7.21 -84.70 -0.61 1.28 16 5 C -0.14 -3.89 8.74 -38.46 -0.34 -4.23 16 6 C 0.09 2.55 5.57 -106.85 -0.60 1.96 16 7 C -0.46 -12.59 9.04 -37.80 -0.34 -12.93 16 8 H 0.08 1.94 7.89 -52.49 -0.41 1.52 16 9 C 0.07 1.94 5.17 -17.34 -0.09 1.85 16 10 N -0.80 -21.78 10.87 55.54 0.60 -21.17 16 11 Si 0.91 19.37 29.59 -169.99 -5.03 14.34 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 15 C -0.16 -3.91 9.71 -39.25 -0.38 -4.30 16 16 C -0.11 -2.40 8.77 -39.91 -0.35 -2.75 16 17 C -0.03 -0.74 6.24 -83.76 -0.52 -1.26 16 18 N -0.49 -9.39 2.65 -103.90 -0.28 -9.67 16 19 C 0.14 1.95 3.49 -67.93 -0.24 1.72 16 20 C -0.16 -2.05 9.17 37.16 0.34 -1.71 16 21 C -0.16 -2.12 9.25 37.16 0.34 -1.77 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.07 0.71 7.00 -51.92 -0.36 0.35 16 25 H 0.13 3.80 6.11 -52.49 -0.32 3.48 16 26 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 27 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 28 H 0.09 1.71 5.90 -52.49 -0.31 1.40 16 29 H 0.09 1.00 6.60 -51.93 -0.34 0.66 16 30 H 0.07 0.95 6.41 -51.93 -0.33 0.62 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.01 6.32 -51.93 -0.33 0.68 16 LS Contribution 287.38 15.07 4.33 4.33 Total: -1.00 -31.50 287.38 -8.60 -40.11 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.51 Total: 3.70 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -3.63 Total: -19.09 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.24 Total: -43.39 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.50 -8.60 -40.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082601487.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.678 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds