Wall clock time and date at job start Mon Mar 30 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30058 * 124.91064 * 2 1 4 4 C 1.35940 * 109.53805 * 180.26324 * 3 2 1 5 5 C 1.39151 * 133.44415 * 179.73778 * 4 3 2 6 6 C 1.40317 * 119.41770 * 180.02562 * 5 4 3 7 7 C 1.41318 * 120.01229 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00454 * 154.92297 * 7 6 5 9 9 C 1.39877 * 119.99900 * 334.91631 * 7 6 5 10 10 N 1.30878 * 120.00113 * 344.00378 * 9 7 6 11 11 Si 1.86809 * 119.99813 * 163.99737 * 9 7 6 12 12 H 1.48499 * 109.46911 * 60.00445 * 11 9 7 13 13 H 1.48502 * 109.46540 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47326 * 300.00220 * 11 9 7 15 15 C 1.41126 * 119.97757 * 0.02562 * 6 5 4 16 16 C 1.36102 * 120.36667 * 0.02562 * 15 6 5 17 17 C 1.39415 * 120.28570 * 359.96286 * 16 15 6 18 18 N 1.36121 * 124.91514 * 179.81967 * 2 1 3 19 19 C 1.46500 * 126.28397 * 0.02562 * 18 2 1 20 20 C 1.53004 * 109.46721 * 239.13645 * 19 18 2 21 21 C 1.53000 * 109.46786 * 119.14460 * 19 18 2 22 22 H 1.08998 * 109.47433 * 270.95835 * 1 2 3 23 23 H 1.08998 * 109.47080 * 30.96625 * 1 2 3 24 24 H 1.09010 * 109.46828 * 150.95813 * 1 2 3 25 25 H 1.07994 * 120.29252 * 359.97438 * 5 4 3 26 26 H 0.96997 * 120.00063 * 180.02562 * 10 9 7 27 27 H 1.08000 * 119.81725 * 180.02562 * 15 6 5 28 28 H 1.08001 * 119.86186 * 180.02562 * 16 15 6 29 29 H 1.08997 * 109.47329 * 359.13805 * 19 18 2 30 30 H 1.08994 * 109.47069 * 293.46683 * 20 19 18 31 31 H 1.09004 * 109.46848 * 173.46537 * 20 19 18 32 32 H 1.09001 * 109.46612 * 53.47026 * 20 19 18 33 33 H 1.09000 * 109.46538 * 179.97438 * 21 19 18 34 34 H 1.09006 * 109.47023 * 299.99356 * 21 19 18 35 35 H 1.08997 * 109.47722 * 59.99585 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2514 1.0665 0.0000 4 6 3.5621 0.7062 -0.0059 5 6 4.7525 1.4267 -0.0131 6 6 5.9750 0.7379 -0.0185 7 6 7.1915 1.4570 -0.0253 8 1 8.0895 1.0030 0.3671 9 6 7.2327 2.7568 -0.5404 10 7 6.2534 3.1950 -1.2900 11 14 8.6853 3.8674 -0.1581 12 1 9.9334 3.2415 -0.6637 13 1 8.4889 5.1836 -0.8171 14 1 8.7881 4.0601 1.3107 15 6 5.9893 -0.6733 -0.0172 16 6 4.8220 -1.3732 -0.0111 17 6 3.5999 -0.7022 -0.0055 18 7 2.2861 -1.1162 0.0035 19 6 1.8140 -2.5030 0.0073 20 6 2.3498 -3.2206 1.2479 21 6 2.3152 -3.2158 -1.2503 22 1 -0.3634 0.0172 1.0275 23 1 -0.3633 0.8812 -0.5288 24 1 -0.3633 -0.8985 -0.4989 25 1 4.7357 2.5065 -0.0154 26 1 6.2822 4.0962 -1.6475 27 1 6.9317 -1.2008 -0.0209 28 1 4.8424 -2.4530 -0.0097 29 1 0.7242 -2.5158 0.0224 30 1 3.4336 -3.3102 1.1761 31 1 1.9065 -4.2144 1.3126 32 1 2.0906 -2.6485 2.1388 33 1 1.9642 -4.2477 -1.2472 34 1 1.9335 -2.7045 -2.1342 35 1 3.4050 -3.2030 -1.2654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082601487.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:55 Heat of formation + Delta-G solvation = 36.020825 kcal Electronic energy + Delta-G solvation = -17420.539238 eV Core-core repulsion = 14803.732828 eV Total energy + Delta-G solvation = -2616.806410 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.67379 -38.24635 -36.73466 -35.19087 -32.11896 -31.95148 -30.47405 -28.85800 -28.16817 -26.51029 -23.47345 -22.57680 -21.95835 -20.45291 -19.20925 -17.64125 -17.39050 -16.52513 -16.34642 -15.61169 -15.34301 -14.88923 -14.34482 -14.16845 -14.00279 -13.78153 -13.69285 -13.34538 -13.13438 -13.11074 -12.95121 -12.75001 -12.44646 -12.32774 -12.02513 -11.85174 -11.72593 -11.61120 -10.99779 -10.75259 -10.46482 -8.93659 -8.64175 -8.50512 -6.22531 0.56060 1.05084 1.38808 1.51423 1.55680 2.01736 2.18499 2.24827 2.82222 3.60179 3.71328 3.75695 3.90200 4.05211 4.16043 4.35263 4.52669 4.66989 4.69211 4.75107 4.83072 4.83682 4.85541 4.95488 5.12618 5.18232 5.19139 5.25972 5.33060 5.39360 5.57947 5.91198 6.04399 6.20127 6.25540 6.60940 6.75334 6.97632 7.06469 7.39825 8.43875 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.035744 B = 0.006482 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.163779 B = 4318.408391 C = 4846.446324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.256 3.744 3 N -0.564 5.564 4 C 0.041 3.959 5 C -0.179 4.179 6 C 0.068 3.932 7 C -0.498 4.498 8 H 0.083 0.917 9 C 0.027 3.973 10 N -0.836 5.836 11 Si 0.984 3.016 12 H -0.254 1.254 13 H -0.273 1.273 14 H -0.262 1.262 15 C -0.179 4.179 16 C -0.090 4.090 17 C -0.036 4.036 18 N -0.483 5.483 19 C 0.128 3.872 20 C -0.158 4.158 21 C -0.161 4.161 22 H 0.100 0.900 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.282 0.718 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.048 0.952 33 H 0.107 0.893 34 H 0.050 0.950 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.448 -12.085 2.006 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.009 4.009 3 N -0.288 5.288 4 C -0.075 4.075 5 C -0.202 4.202 6 C 0.064 3.936 7 C -0.529 4.529 8 H 0.101 0.899 9 C -0.186 4.186 10 N -0.463 5.463 11 Si 0.804 3.196 12 H -0.178 1.178 13 H -0.198 1.198 14 H -0.186 1.186 15 C -0.199 4.199 16 C -0.111 4.111 17 C -0.141 4.141 18 N -0.177 5.177 19 C 0.027 3.973 20 C -0.216 4.216 21 C -0.219 4.219 22 H 0.118 0.882 23 H 0.108 0.892 24 H 0.124 0.876 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.069 0.931 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.819 -11.226 1.866 15.030 hybrid contribution 1.176 0.323 -0.082 1.222 sum -8.643 -10.903 1.784 14.027 Atomic orbital electron populations 1.20468 0.81394 1.05358 1.05063 1.24408 0.97187 0.80903 0.98393 1.70292 1.01991 1.29811 1.26740 1.19284 0.91510 0.92180 1.04510 1.20268 0.89386 0.98255 1.12328 1.17658 0.92919 0.91971 0.91054 1.19700 0.95793 0.99538 1.37866 0.89925 1.26807 1.00200 0.99591 0.91967 1.69973 1.33687 1.18245 1.24395 0.85239 0.77974 0.76851 0.79488 1.17761 1.19784 1.18625 1.21003 0.97141 0.93750 1.07995 1.19526 0.88797 0.98399 1.04385 1.18640 0.86244 0.93927 1.15328 1.45282 1.03366 1.07319 1.61699 1.21666 1.01254 0.77157 0.97232 1.22164 1.01827 1.01672 0.95940 1.22188 1.01653 1.01982 0.96036 0.88186 0.89247 0.87560 0.89054 0.90757 0.86084 0.85381 0.85390 0.93196 0.87461 0.93273 0.87455 0.93129 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.49 10.02 71.24 0.71 -0.78 16 2 C 0.26 9.79 7.85 137.91 1.08 10.87 16 3 N -0.56 -28.58 11.29 -179.97 -2.03 -30.61 16 4 C 0.04 2.25 7.21 39.38 0.28 2.54 16 5 C -0.18 -10.94 8.74 23.00 0.20 -10.74 16 6 C 0.07 3.93 5.57 -21.31 -0.12 3.81 16 7 C -0.50 -28.36 9.04 23.42 0.21 -28.15 16 8 H 0.08 4.38 7.89 -2.91 -0.02 4.36 16 9 C 0.03 1.49 5.17 85.23 0.44 1.93 16 10 N -0.84 -48.72 10.87 21.82 0.24 -48.48 16 11 Si 0.98 41.08 29.59 68.60 2.03 43.11 16 12 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 13 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 14 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 15 C -0.18 -8.89 9.71 22.48 0.22 -8.67 16 16 C -0.09 -4.00 8.77 22.06 0.19 -3.81 16 17 C -0.04 -1.67 6.24 39.15 0.24 -1.42 16 18 N -0.48 -17.51 2.65 -482.62 -1.28 -18.79 16 19 C 0.13 2.99 3.49 44.99 0.16 3.14 16 20 C -0.16 -3.33 9.17 71.98 0.66 -2.67 16 21 C -0.16 -3.48 9.25 71.98 0.67 -2.82 16 22 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.11 1.64 7.00 -2.38 -0.02 1.62 16 25 H 0.09 6.04 6.11 -2.91 -0.02 6.02 16 26 H 0.28 15.09 8.30 -92.71 -0.77 14.32 16 27 H 0.12 5.37 8.06 -2.91 -0.02 5.34 16 28 H 0.13 4.59 5.90 -2.91 -0.02 4.57 16 29 H 0.13 2.05 6.60 -2.39 -0.02 2.04 16 30 H 0.05 1.23 6.41 -2.39 -0.02 1.21 16 31 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.05 1.22 6.32 -2.39 -0.02 1.21 16 Total: -1.00 -76.23 287.38 5.00 -71.23 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 1.09 Total: 20.30 kcal Atomic # 6 Polarization: -41.71 SS G_CDS: 4.95 Total: -36.76 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -3.07 Total: -97.88 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -76.23 5.00 -71.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082601487.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.253 kcal (2) G-P(sol) polarization free energy of solvation -76.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds