Wall clock time and date at job start Mon Mar 30 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47183 * 2 1 4 4 N 1.30105 * 124.95389 * 270.33287 * 3 2 1 5 5 C 1.35784 * 109.64512 * 180.12462 * 4 3 2 6 6 C 1.39741 * 133.59594 * 179.88614 * 5 4 3 7 7 C 1.36608 * 119.88555 * 179.68046 * 6 5 4 8 8 C 1.50697 * 119.66506 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47172 * 270.02132 * 8 7 6 10 10 H 1.08002 * 119.99544 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99905 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99712 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 120.00181 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47346 * 89.99716 * 13 11 9 15 15 H 1.48503 * 109.47448 * 209.99903 * 13 11 9 16 16 H 1.48502 * 109.47302 * 330.00093 * 13 11 9 17 17 C 1.38776 * 120.66703 * 0.02562 * 7 6 5 18 18 C 1.37861 * 120.45201 * 359.97438 * 17 7 6 19 19 C 1.38829 * 119.68965 * 0.02562 * 18 17 7 20 20 N 1.36039 * 124.94954 * 89.99888 * 3 2 1 21 21 C 1.46505 * 126.34902 * 0.07596 * 20 3 2 22 22 H 1.09001 * 109.47119 * 300.00023 * 1 2 3 23 23 H 1.08994 * 109.47075 * 59.99922 * 1 2 3 24 24 H 1.08997 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47119 * 239.99977 * 2 1 3 26 26 H 1.09002 * 109.46924 * 119.99792 * 2 1 3 27 27 H 1.08002 * 120.06295 * 359.66098 * 6 5 4 28 28 H 1.08993 * 109.47224 * 30.02244 * 8 7 6 29 29 H 1.09003 * 109.46884 * 150.02493 * 8 7 6 30 30 H 0.97004 * 119.99780 * 179.97438 * 12 11 9 31 31 H 1.07993 * 119.77675 * 179.97438 * 17 7 6 32 32 H 1.08002 * 120.15463 * 179.97438 * 18 17 7 33 33 H 1.08996 * 109.47005 * 269.95693 * 21 20 3 34 34 H 1.08998 * 109.46786 * 29.95315 * 21 20 3 35 35 H 1.09004 * 109.47216 * 149.95624 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2750 2.1256 -1.0663 5 6 2.7161 3.3587 -0.7079 6 6 3.1141 4.4872 -1.4296 7 6 3.5119 5.6136 -0.7669 8 6 3.9407 6.8275 -1.5502 9 6 5.4232 6.7588 -1.8117 10 1 5.9974 5.9197 -1.4475 11 6 6.0465 7.7671 -2.5159 12 7 7.3402 7.7068 -2.7445 13 14 5.0534 9.2187 -3.1451 14 1 5.0336 10.2885 -2.1154 15 1 5.6737 9.7407 -4.3894 16 1 3.6635 8.7809 -3.4309 17 6 3.5262 5.6509 0.6203 18 6 3.1378 4.5495 1.3529 19 6 2.7304 3.3960 0.6966 20 7 2.2921 2.1555 1.1151 21 6 2.1370 1.7121 2.5028 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.1076 4.4689 -2.5094 28 1 3.4052 6.8554 -2.4991 29 1 3.7139 7.7275 -0.9785 30 1 7.7786 8.4160 -3.2402 31 1 3.8437 6.5488 1.1294 32 1 3.1511 4.5837 2.4323 33 1 1.1295 1.9443 2.8479 34 1 2.3020 0.6363 2.5610 35 1 2.8640 2.2258 3.1318 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082601488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:45 Heat of formation + Delta-G solvation = 37.367816 kcal Electronic energy + Delta-G solvation = -16800.627193 eV Core-core repulsion = 14183.879194 eV Total energy + Delta-G solvation = -2616.748000 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.09541 -38.91354 -35.31882 -35.15059 -34.33746 -32.58285 -30.55160 -28.97688 -27.63332 -25.53627 -24.35093 -22.77351 -21.89747 -20.75205 -18.95887 -18.05721 -17.81150 -16.85311 -16.48058 -16.00410 -15.27291 -15.11676 -14.91244 -14.62461 -14.37055 -14.16908 -13.76959 -13.49371 -13.45608 -13.34069 -12.68343 -12.43695 -12.40974 -12.30862 -11.96957 -11.81401 -11.76364 -11.52796 -11.16659 -10.87861 -10.77201 -9.07885 -8.91484 -8.28592 -6.33812 0.06458 0.62903 1.37535 1.40485 1.52701 1.72249 1.83598 2.37245 2.94999 3.05411 3.19326 3.55968 3.90594 4.08354 4.17898 4.18626 4.31128 4.36873 4.47325 4.57136 4.63789 4.68864 4.78233 4.81733 4.98937 5.05214 5.09101 5.15167 5.27293 5.32939 5.49424 5.54097 5.62296 5.94606 6.00935 6.28895 6.30956 6.71878 6.97236 7.29454 8.88316 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.042623 B = 0.004982 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.761509 B = 5619.109983 C = 5842.550604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C 0.280 3.720 4 N -0.543 5.543 5 C 0.021 3.979 6 C -0.098 4.098 7 C -0.063 4.063 8 C 0.025 3.975 9 C -0.520 4.520 10 H 0.024 0.976 11 C 0.007 3.993 12 N -0.951 5.951 13 Si 0.953 3.047 14 H -0.259 1.259 15 H -0.283 1.283 16 H -0.248 1.248 17 C -0.106 4.106 18 C -0.101 4.101 19 C 0.023 3.977 20 N -0.491 5.491 21 C 0.070 3.930 22 H 0.059 0.941 23 H 0.040 0.960 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.026 0.974 29 H 0.040 0.960 30 H 0.268 0.732 31 H 0.142 0.858 32 H 0.156 0.844 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.506 -14.149 13.197 24.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C 0.014 3.986 4 N -0.265 5.265 5 C -0.096 4.096 6 C -0.118 4.118 7 C -0.065 4.065 8 C -0.012 4.012 9 C -0.558 4.558 10 H 0.043 0.957 11 C -0.189 4.189 12 N -0.591 5.591 13 Si 0.775 3.225 14 H -0.183 1.183 15 H -0.209 1.209 16 H -0.172 1.172 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.086 4.086 20 N -0.181 5.181 21 C -0.070 4.070 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.136 0.864 27 H 0.123 0.877 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.160 0.840 32 H 0.174 0.826 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.476 -14.364 12.451 24.512 hybrid contribution 0.563 1.131 -0.094 1.267 sum -14.914 -13.232 12.356 23.456 Atomic orbital electron populations 1.21698 0.92377 1.03882 1.01859 1.20385 0.97495 0.84098 1.06083 1.24454 0.96658 0.97147 0.80310 1.70287 1.22539 1.03837 1.29804 1.19173 1.04837 0.93555 0.92012 1.19811 1.01791 0.91164 0.99065 1.19639 0.96396 0.95681 0.94833 1.18624 0.94529 0.92675 0.95351 1.21167 0.92712 1.06820 1.35123 0.95718 1.25996 0.95877 1.01476 0.95577 1.70067 1.11304 1.35415 1.42338 0.85621 0.79723 0.78814 0.78316 1.18317 1.20906 1.17205 1.21040 0.99668 0.99145 0.92734 1.20134 1.02031 0.89570 1.00434 1.18970 1.05951 0.89234 0.94413 1.45300 1.54304 1.09540 1.08996 1.22354 1.04491 1.03399 0.76787 0.92181 0.94087 0.88566 0.88393 0.86448 0.87699 0.95601 0.94146 0.92340 0.84049 0.82609 0.89132 0.86713 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.90 71.98 0.71 -1.13 16 2 C -0.04 -0.67 6.23 29.85 0.19 -0.48 16 3 C 0.28 7.83 7.11 137.92 0.98 8.81 16 4 N -0.54 -21.03 11.27 -179.97 -2.03 -23.06 16 5 C 0.02 0.91 7.23 39.45 0.29 1.19 16 6 C -0.10 -4.56 9.67 22.25 0.22 -4.34 16 7 C -0.06 -2.89 5.03 -20.12 -0.10 -2.99 16 8 C 0.03 1.28 4.15 29.10 0.12 1.40 16 9 C -0.52 -31.47 9.65 25.60 0.25 -31.22 16 10 H 0.02 1.67 7.98 -2.91 -0.02 1.65 16 11 C 0.01 0.45 5.47 84.65 0.46 0.91 16 12 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 13 Si 0.95 45.02 27.47 68.60 1.88 46.91 16 14 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 17 C -0.11 -4.08 9.67 22.31 0.22 -3.87 16 18 C -0.10 -3.26 10.05 22.32 0.22 -3.04 16 19 C 0.02 0.79 6.87 38.86 0.27 1.06 16 20 N -0.49 -12.69 3.21 -528.84 -1.70 -14.39 16 21 C 0.07 0.88 10.96 127.77 1.40 2.28 16 22 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.12 1.01 7.01 -2.39 -0.02 0.99 16 27 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 28 H 0.03 1.29 7.13 -2.39 -0.02 1.27 16 29 H 0.04 1.87 7.51 -2.39 -0.02 1.86 16 30 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 31 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.75 6.99 -2.39 -0.02 0.73 16 35 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -80.42 296.60 4.69 -75.73 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.02 Total: 7.13 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 5.22 Total: -31.42 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -3.43 Total: -98.34 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -80.42 4.69 -75.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082601488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.096 kcal (2) G-P(sol) polarization free energy of solvation -80.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds