Wall clock time and date at job start Mon Mar 30 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47360 * 2 1 4 4 C 1.50704 * 109.47376 * 239.99851 * 2 1 3 5 5 N 1.30060 * 124.91347 * 60.02515 * 4 2 1 6 6 C 1.35932 * 109.54651 * 179.97438 * 5 4 2 7 7 C 1.39144 * 133.45579 * 179.97438 * 6 5 4 8 8 C 1.40319 * 119.42396 * 179.97438 * 7 6 5 9 9 C 1.41320 * 120.01183 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99983 * 150.14421 * 9 8 7 11 11 C 1.39884 * 120.00162 * 330.14436 * 9 8 7 12 12 N 1.30875 * 120.00215 * 161.65918 * 11 9 8 13 13 Si 1.86799 * 119.99655 * 341.66199 * 11 9 8 14 14 H 1.48494 * 109.47195 * 95.40973 * 13 11 9 15 15 H 1.48497 * 109.47077 * 215.41058 * 13 11 9 16 16 H 1.48498 * 109.47230 * 335.40858 * 13 11 9 17 17 C 1.41121 * 119.97788 * 0.02562 * 8 7 6 18 18 C 1.36107 * 120.36424 * 0.02562 * 17 8 7 19 19 C 1.39414 * 120.28626 * 359.97438 * 18 17 8 20 20 N 1.36120 * 124.91529 * 239.72554 * 4 2 1 21 21 C 1.46494 * 126.28691 * 0.02562 * 20 4 2 22 22 H 1.09005 * 109.47372 * 300.00199 * 1 2 3 23 23 H 1.09000 * 109.47521 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47431 * 60.00330 * 1 2 3 25 25 H 1.09008 * 109.47176 * 120.00128 * 2 1 3 26 26 H 1.08996 * 109.47202 * 60.00154 * 3 2 1 27 27 H 1.09001 * 109.47045 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46712 * 299.99913 * 3 2 1 29 29 H 1.08000 * 120.28529 * 0.02701 * 7 6 5 30 30 H 0.97000 * 119.99854 * 179.97438 * 12 11 9 31 31 H 1.07999 * 119.82071 * 179.97438 * 17 8 7 32 32 H 1.08002 * 119.85801 * 179.97438 * 18 17 8 33 33 H 1.09002 * 109.47097 * 89.99911 * 21 20 4 34 34 H 1.09000 * 109.47094 * 210.00041 * 21 20 4 35 35 H 1.09007 * 109.47328 * 330.00373 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7781 -0.3501 -2.4540 6 6 2.3852 -1.2079 -3.3162 7 6 2.4426 -1.2888 -4.7041 8 6 3.1757 -2.3238 -5.3045 9 6 3.2428 -2.4174 -6.7130 10 1 4.1156 -2.8440 -7.1849 11 6 2.1788 -1.9577 -7.4961 12 7 2.3627 -1.7059 -8.7672 13 14 0.4954 -1.7029 -6.7274 14 1 0.3426 -0.2802 -6.3307 15 1 -0.5574 -2.0579 -7.7127 16 1 0.3629 -2.5683 -5.5280 17 6 3.8460 -3.2710 -4.5014 18 6 3.7857 -3.1879 -3.1442 19 6 3.0612 -2.1651 -2.5339 20 7 2.8226 -1.8187 -1.2221 21 6 3.3239 -2.5172 -0.0360 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.9281 -0.5609 -5.3139 30 1 1.6247 -1.3875 -9.3102 31 1 4.4091 -4.0667 -4.9662 32 1 4.3015 -3.9175 -2.5374 33 1 2.6115 -3.2870 0.2606 34 1 4.2840 -2.9795 -0.2653 35 1 3.4492 -1.8046 0.7794 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082601489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:18 Heat of formation + Delta-G solvation = 52.254548 kcal Electronic energy + Delta-G solvation = -17341.326610 eV Core-core repulsion = 14725.224147 eV Total energy + Delta-G solvation = -2616.102463 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19795 -36.82282 -34.85523 -33.47350 -33.10945 -29.96739 -28.23429 -27.09122 -26.69084 -24.86414 -22.90343 -20.74506 -20.56621 -18.75874 -17.47872 -16.43047 -16.10239 -15.22601 -14.96088 -14.21380 -14.01642 -13.51641 -13.20164 -13.11273 -12.72520 -12.61220 -12.50420 -12.30199 -12.06535 -11.47775 -11.34482 -11.13288 -10.89144 -10.75348 -10.61450 -10.21903 -10.06517 -9.80694 -9.37584 -9.11578 -8.80718 -7.28322 -7.05402 -6.84168 -4.36582 2.03997 2.69069 3.26189 3.29759 3.30923 3.46556 3.70132 4.13317 4.57038 4.59458 4.87683 4.97497 5.17104 5.29856 5.37082 5.43553 5.51789 5.55483 5.67551 5.80394 5.92299 5.92959 5.95754 6.29855 6.31811 6.43067 6.59782 6.69459 6.70776 7.09481 7.19570 7.51893 7.71112 7.77058 7.97619 8.05376 8.37732 8.63437 8.87944 8.90905 10.18063 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028285 B = 0.007568 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.698298 B = 3699.039779 C = 4343.851967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 C -0.138 4.138 4 C 0.257 3.743 5 N -0.505 5.505 6 C 0.097 3.903 7 C -0.220 4.220 8 C 0.084 3.916 9 C -0.447 4.447 10 H 0.091 0.909 11 C 0.087 3.913 12 N -0.813 5.813 13 Si 0.911 3.089 14 H -0.268 1.268 15 H -0.294 1.294 16 H -0.248 1.248 17 C -0.147 4.147 18 C -0.093 4.093 19 C -0.047 4.047 20 N -0.494 5.494 21 C 0.087 3.913 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.284 0.716 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 0.542 16.342 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 C -0.197 4.197 4 C -0.007 4.007 5 N -0.227 5.227 6 C -0.020 4.020 7 C -0.243 4.243 8 C 0.080 3.920 9 C -0.476 4.476 10 H 0.109 0.891 11 C -0.131 4.131 12 N -0.438 5.438 13 Si 0.738 3.262 14 H -0.194 1.194 15 H -0.222 1.222 16 H -0.171 1.171 17 C -0.167 4.167 18 C -0.114 4.114 19 C -0.151 4.151 20 N -0.188 5.188 21 C -0.056 4.056 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.667 1.184 15.878 16.009 hybrid contribution -0.162 -0.677 0.452 0.830 sum -1.829 0.507 16.330 16.440 Atomic orbital electron populations 1.21765 0.93270 1.02092 1.02522 1.19564 0.96569 0.95681 0.91166 1.21769 1.00952 0.94400 1.02537 1.23146 0.94675 0.87699 0.95221 1.70274 1.25850 1.28357 0.98251 1.18760 0.97275 0.92252 0.93675 1.20008 1.12049 1.02527 0.89701 1.17492 0.91010 0.89811 0.93711 1.19340 1.04056 1.35064 0.89168 0.89073 1.26090 1.01674 0.90823 0.94557 1.69719 1.34246 1.32257 1.07566 0.86283 0.80145 0.80504 0.79264 1.19424 1.22241 1.17099 1.20792 1.04327 0.99780 0.91821 1.19286 1.00844 0.96655 0.94578 1.18560 1.10321 1.03513 0.82674 1.44640 1.43892 1.25190 1.05113 1.21702 1.00033 0.97162 0.86713 0.92188 0.92852 0.91177 0.90451 0.92210 0.92832 0.91145 0.87555 0.90596 0.87013 0.88619 0.91993 0.90509 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.17 37.15 0.34 -1.36 16 2 C -0.01 -0.12 3.24 -91.77 -0.30 -0.42 16 3 C -0.14 -1.68 9.17 37.16 0.34 -1.34 16 4 C 0.26 4.79 6.37 -154.79 -0.99 3.81 16 5 N -0.51 -11.64 11.27 -8.24 -0.09 -11.74 16 6 C 0.10 2.43 7.21 -84.71 -0.61 1.82 16 7 C -0.22 -5.88 7.22 -38.46 -0.28 -6.16 16 8 C 0.08 2.21 5.11 -106.85 -0.55 1.66 16 9 C -0.45 -12.33 9.55 -37.79 -0.36 -12.69 16 10 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 11 C 0.09 2.37 5.40 -17.34 -0.09 2.27 16 12 N -0.81 -22.36 13.93 55.54 0.77 -21.58 16 13 Si 0.91 22.49 24.52 -169.99 -4.17 18.33 16 14 H -0.27 -6.68 6.70 56.52 0.38 -6.30 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.25 -6.36 6.87 56.52 0.39 -5.97 16 17 C -0.15 -3.39 9.71 -39.25 -0.38 -3.77 16 18 C -0.09 -1.96 9.96 -39.91 -0.40 -2.36 16 19 C -0.05 -1.04 6.88 -83.76 -0.58 -1.62 16 20 N -0.49 -9.07 3.20 -118.29 -0.38 -9.45 16 21 C 0.09 1.07 10.79 59.84 0.65 1.72 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.08 0.82 6.65 -51.92 -0.35 0.47 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.11 2.93 4.73 -52.49 -0.25 2.68 16 30 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 31 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.72 7.00 -51.93 -0.36 0.35 16 LS Contribution 289.35 15.07 4.36 4.36 Total: -1.00 -31.65 289.35 -7.48 -39.13 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.78 Total: -0.62 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -3.20 Total: -18.43 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.30 Total: -42.77 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.17 Total: 18.33 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.65 -7.48 -39.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082601489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.387 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds