Wall clock time and date at job start Mon Mar 30 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47074 * 2 1 4 4 C 1.50702 * 109.47377 * 180.02562 * 3 2 1 5 5 N 1.30066 * 124.91040 * 269.69862 * 4 3 2 6 6 C 1.35935 * 109.53964 * 179.86971 * 5 4 3 7 7 C 1.39147 * 133.44926 * 180.09757 * 6 5 4 8 8 C 1.40318 * 119.42284 * 180.32130 * 7 6 5 9 9 C 1.41315 * 120.01471 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00180 * 204.71936 * 9 8 7 11 11 C 1.39878 * 120.00100 * 24.70685 * 9 8 7 12 12 N 1.30888 * 119.99854 * 17.99355 * 11 9 8 13 13 Si 1.86800 * 120.00393 * 197.98352 * 11 9 8 14 14 H 1.48502 * 109.46774 * 60.00737 * 13 11 9 15 15 H 1.48501 * 109.47189 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47290 * 300.00744 * 13 11 9 17 17 C 1.41127 * 119.97753 * 359.97438 * 8 7 6 18 18 C 1.36110 * 120.35888 * 359.97438 * 17 8 7 19 19 C 1.39406 * 120.29330 * 0.03595 * 18 17 8 20 20 N 1.36116 * 124.91690 * 90.00121 * 4 3 2 21 21 C 1.46498 * 126.28238 * 359.94305 * 20 4 3 22 22 H 1.09003 * 109.46952 * 59.99731 * 1 2 3 23 23 H 1.09005 * 109.46572 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47054 * 299.99862 * 1 2 3 25 25 H 1.09003 * 109.47339 * 119.99893 * 2 1 3 26 26 H 1.09002 * 109.47658 * 240.00359 * 2 1 3 27 27 H 1.09003 * 109.47450 * 299.99964 * 3 2 1 28 28 H 1.09004 * 109.47065 * 59.99905 * 3 2 1 29 29 H 1.08007 * 120.28945 * 0.29446 * 7 6 5 30 30 H 0.96999 * 120.00088 * 179.97438 * 12 11 9 31 31 H 1.07993 * 119.81950 * 180.02562 * 17 8 7 32 32 H 1.08003 * 119.85044 * 180.02562 * 18 17 8 33 33 H 1.09004 * 109.47092 * 90.00622 * 21 20 4 34 34 H 1.09008 * 109.46800 * 210.00072 * 21 20 4 35 35 H 1.08996 * 109.47382 * 329.99672 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2918 1.4481 1.0656 6 6 5.6024 1.4434 0.7048 7 6 6.7931 1.4441 1.4247 8 6 8.0154 1.4449 0.7354 9 6 9.2322 1.4452 1.4540 10 1 10.1290 1.8368 0.9973 11 6 9.2750 0.9383 2.7570 12 7 8.3168 0.1574 3.1873 13 14 10.6999 1.3756 3.8830 14 1 10.7497 2.8481 4.0692 15 1 10.5107 0.7159 5.2000 16 1 11.9723 0.9102 3.2750 17 6 8.0291 1.4444 -0.6758 18 6 6.8614 1.4427 -1.3751 19 6 5.6396 1.4421 -0.7037 20 7 4.3256 1.4428 -1.1171 21 6 3.8529 1.4419 -2.5037 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 6.7768 1.4445 2.5046 30 1 8.3466 -0.1944 4.0908 31 1 8.9712 1.4446 -1.2037 32 1 6.8814 1.4419 -2.4549 33 1 3.7349 2.4693 -2.8481 34 1 4.5786 0.9283 -3.1346 35 1 2.8938 0.9272 -2.5603 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082601491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:25 Heat of formation + Delta-G solvation = 30.300232 kcal Electronic energy + Delta-G solvation = -17000.292584 eV Core-core repulsion = 14383.238111 eV Total energy + Delta-G solvation = -2617.054473 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 5.21 seconds Orbital eigenvalues (eV) -42.62382 -38.28520 -35.92218 -34.93399 -34.84164 -31.21401 -30.47561 -28.50088 -27.73545 -26.16121 -23.20830 -22.43826 -22.07475 -20.55650 -19.23663 -17.64970 -17.61916 -16.59788 -16.46078 -15.86773 -15.62865 -14.71917 -14.62083 -14.49461 -14.18332 -13.84224 -13.71243 -13.28268 -13.12425 -12.92172 -12.76120 -12.53778 -12.32410 -12.23349 -11.95300 -11.76754 -11.65839 -11.59052 -11.01641 -10.77283 -10.51613 -8.98353 -8.66998 -8.54227 -6.23598 0.53088 1.02251 1.38993 1.51353 1.55445 2.04735 2.15329 2.24243 2.79579 3.44857 3.73365 3.88801 4.05845 4.12352 4.14414 4.36359 4.48845 4.51682 4.66302 4.68616 4.76233 4.83941 4.98761 5.02498 5.11157 5.21971 5.24206 5.28912 5.31838 5.46264 5.55549 5.86745 6.02411 6.16035 6.22649 6.58797 6.69800 6.95608 7.04413 7.36184 8.41523 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034312 B = 0.005744 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.849730 B = 4873.397597 C = 5522.636096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.031 4.031 4 C 0.266 3.734 5 N -0.561 5.561 6 C 0.045 3.955 7 C -0.183 4.183 8 C 0.070 3.930 9 C -0.499 4.499 10 H 0.085 0.915 11 C 0.030 3.970 12 N -0.834 5.834 13 Si 0.983 3.017 14 H -0.262 1.262 15 H -0.273 1.273 16 H -0.253 1.253 17 C -0.176 4.176 18 C -0.093 4.093 19 C -0.054 4.054 20 N -0.494 5.494 21 C 0.077 3.923 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.283 0.717 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 1.064 -9.689 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.070 4.070 4 C 0.000 4.000 5 N -0.284 5.284 6 C -0.070 4.070 7 C -0.206 4.206 8 C 0.066 3.934 9 C -0.529 4.529 10 H 0.103 0.897 11 C -0.184 4.184 12 N -0.460 5.460 13 Si 0.804 3.196 14 H -0.186 1.186 15 H -0.198 1.198 16 H -0.177 1.177 17 C -0.196 4.196 18 C -0.113 4.113 19 C -0.159 4.159 20 N -0.187 5.187 21 C -0.064 4.064 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.142 0.858 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.827 0.925 -8.841 14.796 hybrid contribution 1.184 -0.066 0.194 1.202 sum -10.643 0.859 -8.647 13.740 Atomic orbital electron populations 1.21714 0.92598 1.02614 1.02992 1.21445 0.97829 0.94340 1.01674 1.20343 0.81511 0.99594 1.05512 1.24239 0.96592 0.98363 0.80806 1.70282 1.01929 1.26423 1.29814 1.19264 0.91509 1.04242 0.92033 1.20230 0.89383 1.12818 0.98149 1.17673 0.92876 0.90759 0.92045 1.19720 0.95876 1.37994 0.99348 0.89721 1.26816 0.99948 0.91883 0.99739 1.69978 1.34143 1.23448 1.18454 0.85248 0.78070 0.79512 0.76799 1.18595 1.19767 1.17663 1.21000 0.97140 1.07775 0.93690 1.19524 0.88683 1.04291 0.98833 1.18812 0.86277 1.16424 0.94415 1.44914 1.03472 1.62236 1.08085 1.22157 1.02219 1.04184 0.77825 0.90636 0.91925 0.92254 0.94045 0.91799 0.86840 0.88858 0.89177 0.90644 0.85758 0.84866 0.89874 0.89709 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 71.98 0.71 -1.43 16 2 C -0.11 -2.56 5.92 30.59 0.18 -2.37 16 3 C -0.03 -0.77 5.28 29.85 0.16 -0.61 16 4 C 0.27 10.26 7.10 137.91 0.98 11.24 16 5 N -0.56 -28.57 11.29 -179.97 -2.03 -30.60 16 6 C 0.04 2.51 7.21 39.38 0.28 2.79 16 7 C -0.18 -11.14 8.74 22.99 0.20 -10.94 16 8 C 0.07 4.06 5.57 -21.31 -0.12 3.94 16 9 C -0.50 -28.21 9.03 23.42 0.21 -28.00 16 10 H 0.08 4.45 7.91 -2.91 -0.02 4.43 16 11 C 0.03 1.61 5.13 85.23 0.44 2.05 16 12 N -0.83 -48.33 10.97 21.82 0.24 -48.09 16 13 Si 0.98 40.73 29.60 68.60 2.03 42.76 16 14 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 15 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 16 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 17 C -0.18 -8.69 9.71 22.48 0.22 -8.47 16 18 C -0.09 -4.09 9.96 22.06 0.22 -3.87 16 19 C -0.05 -2.54 6.88 39.15 0.27 -2.27 16 20 N -0.49 -18.19 3.20 -528.15 -1.69 -19.88 16 21 C 0.08 1.70 10.74 127.77 1.37 3.07 16 22 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.11 1.96 7.64 -2.39 -0.02 1.94 16 28 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.09 5.94 6.16 -2.91 -0.02 5.92 16 30 H 0.28 15.05 8.30 -92.71 -0.77 14.28 16 31 H 0.12 5.43 8.06 -2.91 -0.02 5.40 16 32 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 33 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.11 1.67 7.61 -2.39 -0.02 1.65 16 Total: -1.00 -75.78 296.41 4.75 -71.03 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 1.07 Total: 19.65 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: 5.13 Total: -34.87 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -3.48 Total: -98.57 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -75.78 4.75 -71.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082601491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.332 kcal (2) G-P(sol) polarization free energy of solvation -75.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.22 seconds