Wall clock time and date at job start Mon Mar 30 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47236 * 2 1 4 4 N 1.30105 * 124.95389 * 305.33425 * 3 2 1 5 5 C 1.35784 * 109.64512 * 180.12462 * 4 3 2 6 6 C 1.39741 * 133.59594 * 179.88614 * 5 4 3 7 7 C 1.36608 * 119.88555 * 179.68046 * 6 5 4 8 8 C 1.38776 * 120.66703 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.77441 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47336 * 269.97385 * 9 8 7 11 11 C 1.50696 * 109.47336 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99986 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99961 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00227 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99858 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46726 * 60.00442 * 15 13 11 17 17 H 1.48504 * 109.46812 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47683 * 300.00411 * 15 13 11 19 19 C 1.37861 * 120.45201 * 359.97438 * 8 7 6 20 20 C 1.38829 * 119.68965 * 0.02562 * 19 8 7 21 21 N 1.36039 * 124.94954 * 125.00025 * 3 2 1 22 22 H 0.96999 * 126.35189 * 0.02562 * 21 3 2 23 23 H 1.08997 * 109.47210 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47142 * 299.99634 * 1 2 3 25 25 H 1.08997 * 109.47534 * 59.99648 * 1 2 3 26 26 H 1.09001 * 109.46627 * 239.99875 * 2 1 3 27 27 H 1.08998 * 109.47085 * 120.00066 * 2 1 3 28 28 H 1.08002 * 120.06295 * 359.66098 * 6 5 4 29 29 H 1.07995 * 119.66839 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47066 * 29.97933 * 9 8 7 31 31 H 1.09005 * 109.46790 * 149.97394 * 9 8 7 32 32 H 1.09000 * 109.46764 * 300.00396 * 10 9 8 33 33 H 1.08999 * 109.46594 * 59.99865 * 10 9 8 34 34 H 0.96995 * 120.00137 * 180.02562 * 14 13 11 35 35 H 1.08002 * 120.15463 * 179.97438 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 1.6994 2.3291 -0.8699 5 6 2.3335 3.4940 -0.5791 6 6 2.3414 4.7604 -1.1697 7 6 3.0977 5.7601 -0.6266 8 6 3.8619 5.5322 0.5091 9 6 4.6883 6.6496 1.0916 10 6 6.0822 6.6355 0.4610 11 6 6.9087 7.7525 1.0440 12 1 6.4826 8.4069 1.7900 13 6 8.2089 7.9392 0.6249 14 7 8.7277 7.1427 -0.2840 15 14 9.2333 9.3243 1.3471 16 1 9.3529 9.1377 2.8155 17 1 10.5858 9.3112 0.7341 18 1 8.5753 10.6254 1.0655 19 6 3.8695 4.2908 1.1086 20 6 3.1072 3.2627 0.5708 21 7 2.8951 1.9423 0.9134 22 1 3.2886 1.4733 1.6658 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7509 4.9485 -2.0542 29 1 3.1015 6.7373 -1.0862 30 1 4.2054 7.6046 0.8845 31 1 4.7757 6.5129 2.1695 32 1 6.5649 5.6804 0.6681 33 1 5.9946 6.7721 -0.6169 34 1 9.6425 7.2737 -0.5785 35 1 4.4664 4.1186 1.9921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082601492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:32 Heat of formation + Delta-G solvation = 40.202131 kcal Electronic energy + Delta-G solvation = -16394.998732 eV Core-core repulsion = 13778.373637 eV Total energy + Delta-G solvation = -2616.625095 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -41.91677 -37.66244 -34.11535 -33.40898 -32.80520 -31.23384 -29.55452 -27.96038 -25.15846 -24.05945 -22.10012 -21.76229 -20.45987 -20.10896 -17.48363 -16.79362 -16.21877 -15.41876 -14.96254 -14.48452 -14.32172 -14.16982 -13.55185 -13.39869 -12.75264 -12.55144 -12.42201 -11.81765 -11.70939 -11.61206 -11.33950 -11.24227 -10.89532 -10.78702 -10.60406 -10.35269 -9.86925 -9.74672 -9.48169 -9.10751 -8.34976 -8.04431 -7.58876 -5.99402 -4.02801 1.27913 1.87541 2.97008 2.99255 3.33299 3.37871 3.40137 4.14942 4.21973 4.46296 4.65255 4.89955 5.00054 5.15809 5.35920 5.42756 5.46196 5.54335 5.60256 5.72209 5.76823 5.80853 6.00114 6.13518 6.28275 6.44083 6.64977 6.74647 6.81387 6.99233 7.12991 7.28710 7.47596 7.68249 7.82422 8.00525 8.06272 8.40521 9.04210 9.61183 11.11525 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.052970 B = 0.004010 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.477758 B = 6981.606624 C = 7158.273754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.041 4.041 3 C 0.266 3.734 4 N -0.489 5.489 5 C 0.029 3.971 6 C -0.068 4.068 7 C -0.120 4.120 8 C -0.034 4.034 9 C -0.078 4.078 10 C 0.030 3.970 11 C -0.523 4.523 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.122 4.122 20 C 0.054 3.946 21 N -0.602 5.602 22 H 0.418 0.582 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.016 0.984 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.056 -12.637 2.199 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 C -0.001 4.001 4 N -0.210 5.210 5 C -0.088 4.088 6 C -0.088 4.088 7 C -0.140 4.140 8 C -0.036 4.036 9 C -0.115 4.115 10 C -0.007 4.007 11 C -0.562 4.562 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.143 4.143 20 C -0.055 4.055 21 N -0.214 5.214 22 H 0.256 0.744 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.097 0.903 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.462 -12.715 1.355 19.304 hybrid contribution 1.564 0.571 1.398 2.174 sum -12.897 -12.145 2.753 17.928 Atomic orbital electron populations 1.21681 0.93224 1.01967 1.03244 1.20056 0.97297 0.86952 1.03704 1.23442 0.92013 0.96995 0.87604 1.70247 1.25772 0.99200 1.25755 1.18957 0.99721 0.93966 0.96126 1.19940 0.99704 0.89595 0.99533 1.20664 0.97442 0.99343 0.96532 1.20124 0.94625 0.94714 0.94151 1.20842 0.97383 0.93861 0.99448 1.19075 0.88317 0.97175 0.96143 1.21221 0.97296 1.14472 1.23174 0.92605 1.25024 0.97936 0.96331 0.95105 1.69961 1.15015 1.38040 1.30320 0.86657 0.79352 0.82667 0.79311 1.20261 1.21308 1.20187 1.19829 1.01270 0.90994 1.02175 1.18881 1.02479 0.85222 0.98901 1.42975 1.41285 1.09768 1.27378 0.74357 0.91845 0.92680 0.91123 0.88870 0.90264 0.85811 0.85278 0.91828 0.92204 0.96520 0.96255 0.92921 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.85 37.16 0.37 -0.74 16 2 C -0.04 -0.34 6.56 -27.89 -0.18 -0.52 16 3 C 0.27 3.47 7.37 -154.83 -1.14 2.33 16 4 N -0.49 -7.99 11.21 -8.24 -0.09 -8.09 16 5 C 0.03 0.52 7.23 -84.70 -0.61 -0.10 16 6 C -0.07 -1.14 10.05 -39.61 -0.40 -1.54 16 7 C -0.12 -2.07 9.61 -39.97 -0.38 -2.46 16 8 C -0.03 -0.64 5.14 -104.56 -0.54 -1.18 16 9 C -0.08 -1.60 5.27 -27.89 -0.15 -1.75 16 10 C 0.03 0.77 4.95 -27.89 -0.14 0.64 16 11 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 15 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.12 -2.12 9.71 -39.50 -0.38 -2.51 16 20 C 0.05 0.90 7.31 -83.99 -0.61 0.29 16 21 N -0.60 -7.82 6.23 -8.00 -0.05 -7.87 16 22 H 0.42 3.91 8.96 -40.82 -0.37 3.54 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 30 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 31 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 301.54 15.07 4.54 4.54 Total: -1.00 -33.02 301.54 -9.44 -42.46 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.97 Total: -0.29 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -4.58 Total: -21.03 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.59 Total: -42.25 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.02 -9.44 -42.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082601492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.664 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds