Wall clock time and date at job start Mon Mar 30 2020 06:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47236 * 2 1 4 4 N 1.30105 * 124.95389 * 305.33425 * 3 2 1 5 5 C 1.35784 * 109.64512 * 180.12462 * 4 3 2 6 6 C 1.39741 * 133.59594 * 179.88614 * 5 4 3 7 7 C 1.36608 * 119.88555 * 179.68046 * 6 5 4 8 8 C 1.38776 * 120.66703 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.77441 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47336 * 269.97385 * 9 8 7 11 11 C 1.50696 * 109.47336 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99986 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99961 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00227 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99858 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46726 * 60.00442 * 15 13 11 17 17 H 1.48504 * 109.46812 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47683 * 300.00411 * 15 13 11 19 19 C 1.37861 * 120.45201 * 359.97438 * 8 7 6 20 20 C 1.38829 * 119.68965 * 0.02562 * 19 8 7 21 21 N 1.36039 * 124.94954 * 125.00025 * 3 2 1 22 22 H 0.96999 * 126.35189 * 0.02562 * 21 3 2 23 23 H 1.08997 * 109.47210 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47142 * 299.99634 * 1 2 3 25 25 H 1.08997 * 109.47534 * 59.99648 * 1 2 3 26 26 H 1.09001 * 109.46627 * 239.99875 * 2 1 3 27 27 H 1.08998 * 109.47085 * 120.00066 * 2 1 3 28 28 H 1.08002 * 120.06295 * 359.66098 * 6 5 4 29 29 H 1.07995 * 119.66839 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47066 * 29.97933 * 9 8 7 31 31 H 1.09005 * 109.46790 * 149.97394 * 9 8 7 32 32 H 1.09000 * 109.46764 * 300.00396 * 10 9 8 33 33 H 1.08999 * 109.46594 * 59.99865 * 10 9 8 34 34 H 0.96995 * 120.00137 * 180.02562 * 14 13 11 35 35 H 1.08002 * 120.15463 * 179.97438 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 1.6994 2.3291 -0.8699 5 6 2.3335 3.4940 -0.5791 6 6 2.3414 4.7604 -1.1697 7 6 3.0977 5.7601 -0.6266 8 6 3.8619 5.5322 0.5091 9 6 4.6883 6.6496 1.0916 10 6 6.0822 6.6355 0.4610 11 6 6.9087 7.7525 1.0440 12 1 6.4826 8.4069 1.7900 13 6 8.2089 7.9392 0.6249 14 7 8.7277 7.1427 -0.2840 15 14 9.2333 9.3243 1.3471 16 1 9.3529 9.1377 2.8155 17 1 10.5858 9.3112 0.7341 18 1 8.5753 10.6254 1.0655 19 6 3.8695 4.2908 1.1086 20 6 3.1072 3.2627 0.5708 21 7 2.8951 1.9423 0.9134 22 1 3.2886 1.4733 1.6658 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7509 4.9485 -2.0542 29 1 3.1015 6.7373 -1.0862 30 1 4.2054 7.6046 0.8845 31 1 4.7757 6.5129 2.1695 32 1 6.5649 5.6804 0.6681 33 1 5.9946 6.7721 -0.6169 34 1 9.6425 7.2737 -0.5785 35 1 4.4664 4.1186 1.9921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082601492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:31 Heat of formation + Delta-G solvation = 20.852220 kcal Electronic energy + Delta-G solvation = -16395.837807 eV Core-core repulsion = 13778.373637 eV Total energy + Delta-G solvation = -2617.464170 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.09556 -38.99947 -35.75268 -34.49344 -34.23521 -32.87299 -30.85561 -29.52352 -26.75216 -25.18992 -23.58282 -23.18960 -21.76130 -21.40716 -18.71230 -18.48823 -17.85651 -16.56971 -16.43309 -16.25686 -15.46189 -15.04578 -14.85851 -14.64251 -14.37524 -14.27288 -13.65463 -13.33807 -13.07189 -12.82158 -12.60054 -12.46334 -12.38151 -12.25960 -12.03214 -11.75504 -11.69966 -11.34290 -11.18438 -10.95048 -10.53945 -9.31447 -8.93241 -8.17957 -6.30272 0.01490 0.54785 1.41498 1.44723 1.52539 1.79374 1.93828 2.42375 2.88330 3.14748 3.16295 3.63628 4.02932 4.09446 4.17847 4.33907 4.37845 4.44953 4.47451 4.70602 4.72850 4.83298 4.89475 5.02566 5.09370 5.12752 5.19751 5.36270 5.45302 5.51508 5.54133 5.57184 5.85634 5.88348 5.95205 6.24263 6.48510 6.86872 6.90540 7.39176 8.93262 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.052970 B = 0.004010 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.477758 B = 6981.606624 C = 7158.273754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C 0.283 3.717 4 N -0.524 5.524 5 C 0.012 3.988 6 C -0.075 4.075 7 C -0.125 4.125 8 C -0.061 4.061 9 C -0.061 4.061 10 C 0.037 3.963 11 C -0.543 4.543 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.266 1.266 19 C -0.121 4.121 20 C 0.039 3.961 21 N -0.590 5.590 22 H 0.436 0.564 23 H 0.091 0.909 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.070 0.930 31 H 0.066 0.934 32 H -0.012 1.012 33 H -0.009 1.009 34 H 0.263 0.737 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.690 -13.615 3.321 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 C 0.016 3.984 4 N -0.245 5.245 5 C -0.105 4.105 6 C -0.095 4.095 7 C -0.145 4.145 8 C -0.062 4.062 9 C -0.099 4.099 10 C 0.000 4.000 11 C -0.581 4.581 12 H 0.083 0.917 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.190 1.190 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.142 4.142 20 C -0.071 4.071 21 N -0.204 5.204 22 H 0.278 0.722 23 H 0.110 0.890 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.006 0.994 33 H 0.009 0.991 34 H 0.072 0.928 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.105 -13.708 2.509 20.551 hybrid contribution 1.687 0.705 1.026 2.097 sum -13.418 -13.003 3.535 19.016 Atomic orbital electron populations 1.21663 0.92718 1.03428 1.01997 1.20377 0.97563 0.83997 1.06027 1.24457 0.89897 0.98217 0.85812 1.70287 1.27241 0.99420 1.27594 1.19341 0.99937 0.94720 0.96516 1.20135 0.99794 0.89467 1.00096 1.20768 0.97435 1.00066 0.96272 1.19992 0.96005 0.94781 0.95460 1.20550 0.94608 0.95299 0.99423 1.18916 0.91267 0.95177 0.94682 1.21697 0.97997 1.15080 1.23353 0.91659 1.26004 0.99420 0.99063 0.95403 1.70110 1.15482 1.40073 1.31848 0.85489 0.77324 0.79323 0.78843 1.19024 1.21065 1.19035 1.19918 1.01079 0.90907 1.02284 1.18899 1.02557 0.86608 0.99018 1.42997 1.40980 1.08505 1.27906 0.72215 0.89027 0.93215 0.93110 0.87560 0.86820 0.84162 0.84399 0.91091 0.91490 0.99356 0.99106 0.92829 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.85 71.98 0.71 -1.08 16 2 C -0.04 -0.54 6.56 29.85 0.20 -0.34 16 3 C 0.28 6.82 7.37 137.92 1.02 7.84 16 4 N -0.52 -16.67 11.21 -179.97 -2.02 -18.68 16 5 C 0.01 0.42 7.23 39.45 0.29 0.70 16 6 C -0.08 -2.55 10.05 22.25 0.22 -2.33 16 7 C -0.13 -4.42 9.61 22.02 0.21 -4.21 16 8 C -0.06 -2.31 5.14 -19.83 -0.10 -2.41 16 9 C -0.06 -2.57 5.27 29.85 0.16 -2.41 16 10 C 0.04 1.97 4.95 29.85 0.15 2.11 16 11 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 12 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 15 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 C -0.12 -4.24 9.71 22.32 0.22 -4.02 16 20 C 0.04 1.28 7.31 38.86 0.28 1.57 16 21 N -0.59 -14.26 6.23 -179.24 -1.12 -15.38 16 22 H 0.44 7.07 8.96 -92.71 -0.83 6.23 16 23 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 29 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.07 2.81 8.08 -2.39 -0.02 2.79 16 31 H 0.07 2.65 8.08 -2.38 -0.02 2.63 16 32 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -72.42 301.54 3.47 -68.95 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.25 Total: 11.16 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 4.04 Total: -34.89 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -2.85 Total: -91.49 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -72.42 3.47 -68.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082601492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.797 kcal (2) G-P(sol) polarization free energy of solvation -72.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds